KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:02:21 2014 Check: 00 .. Name: ENSP00000237353/1-1007 Len: 1085 Check: 1883 Weight: 1.00 Name: ENSBTAP00000017642/1-1023 Len: 1085 Check: 8291 Weight: 1.00 Name: ENSTTRP00000001798/1-922 Len: 1085 Check: 4519 Weight: 1.00 Name: bmy_21904T0/1-1001 Len: 1085 Check: 6424 Weight: 1.00 Name: BACU018157/1-280 Len: 1085 Check: 3227 Weight: 1.00 // 1 50 ENSP00000237353/1-1007 ---------- ---------- ---MKDEAGE RDREVSSLNS KLLSLQLDIK ENSBTAP00000017642/1-1023 -------MLK LKGELRGTKE MKDETAEVGE RDRDVSSLNS KLLSLQADIK ENSTTRP00000001798/1-922 ---------- ---------- ---MKDEAGE RDREVSSLNS KLLSLQADIK bmy_21904T0/1-1001 TLISSAIPKS PLGRPNGPCF LSRKASVLGL DYDPVSNLGI RFLSLSYGAE BACU018157/1-280 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000237353/1-1007 ---------- --NLHDVCKR QRKTLQDNQL CMEEA-MNSS HDKKQAQALA ENSBTAP00000017642/1-1023 ---------- --NLHNVCKR QGKTLQENQL CVEEAMMNSS HNKK--TALA ENSTTRP00000001798/1-922 ---------- --NLHDVCKR QGKTLQETQL CVEEEMMDSG HDKK--QVSA bmy_21904T0/1-1001 PQALAKPPPP TXSPYQVYNK AQEMLKLKGE LRGAQEMK-D ENKK--QVSA BACU018157/1-280 ---------- ---------- ---------- ---------- ---------- 101 150 ENSP00000237353/1-1007 FEESEVEFGS SKQCHLRQLQ QLKKKLLVLQ QELEFHTEEL QTSYYSLRQY ENSBTAP00000017642/1-1023 FEESHVNFEP NKQCHLRQLQ QLKKKLLALQ QELEFRTEEL QTSYCSLLQY ENSTTRP00000001798/1-922 FEESHMEFEP NKQCHLRQLQ QLKKKLLALQ QELEFRTEEL QTSYCSLLQY bmy_21904T0/1-1001 FEESHMESEP NKQCHLRQLQ QLKKKLLALQ QELEFRTEEL QTSYSSLLQY BACU018157/1-280 ---------- ---------- ---------- ---------- ---------- 151 200 ENSP00000237353/1-1007 QSILEKQTSD LVLLHHHCKL KEDEVILYEE EMGNHNENTG EKLHLAQEQL ENSBTAP00000017642/1-1023 QSVLEKQTSD LVILHHHCKM KEDEVILYEE ELGNHNENTG DKLHLAQEQL ENSTTRP00000001798/1-922 QSILEKETSD LVILHHHCKM KEDEVILYEE ETGNHNENTG EKLHLAQEQL bmy_21904T0/1-1001 QSILEKETSD LVILHHHCKM KEDEVILYEE EMGNHNEKTR EKLHLAQEQL BACU018157/1-280 ---------- ---------- ---------- ---------- ---------- 201 250 ENSP00000237353/1-1007 ALAGDKIASL ERSLNLYRDK YQSSLSNIEL LECQVKMLQG ELGGIMGQEP ENSBTAP00000017642/1-1023 ALAGDKIVSL ERSLNLYRDK YQTSLSNIEL LECQVKMLEG ELSGIVAQDP ENSTTRP00000001798/1-922 VLARDKILSL ERSLNLYRDK YQTSLSSIEL LECRVKILEG ELSRIVGQEP bmy_21904T0/1-1001 ALAGDKILSL ERSLNLYRDK YQTSLSNIEL LECQVKMLEG ELSRIVGQEP BACU018157/1-280 ---------- ---------- ---------- ---------- ---------- 251 300 ENSP00000237353/1-1007 ENKGDHSKVR IYTSPCMIQE HQETQKRLSE VWQKVSQQDD LIQELRNKLA ENSBTAP00000017642/1-1023 ENKGDHSKVR IFTSPCMIQE HQETLKRLSE VWQKVSEQDD LIQELRNKLA ENSTTRP00000001798/1-922 KSNGDHSKVH ICTSPCMIQE HQ-TLKRLSE VWQKVSEQDD LIKELRNKLA bmy_21904T0/1-1001 KNKGDHSKVH IYTSPCMIQE HQETLKRLSE VWQKVSEQDD LIKELRNKLA BACU018157/1-280 ---------- ---------- ---------- ---------- ---------- 301 350 ENSP00000237353/1-1007 CSNALVLERE KALIKLQADF ASCTATHRYP PSSSEECEDI KKILKHLQEQ ENSBTAP00000017642/1-1023 CSNALVLERE EALIKLQADF ASYTATHRHP PSSSEDCEDI KKILKHLQEQ ENSTTRP00000001798/1-922 CSNALVLERE EALIKLQADF ASYIATHRHP SSSSEDCEDI KKILKHLQEQ bmy_21904T0/1-1001 CSNALVLERE EALIKLQADF ASYTATHRHP PSSSEDCEDI KKILKHLQEQ BACU018157/1-280 ---------- ---------- ---------- ---------- ---------- 351 400 ENSP00000237353/1-1007 KDSQCLHVEE YQNLVKDLRV ELEAVSEQKR NIMKDMMKLE LDLHGLREET ENSBTAP00000017642/1-1023 KDSQCLHVEE YQNLVKDLRM ELESVSEQKK NIMKDMMKLE LDLHGLREET ENSTTRP00000001798/1-922 KDSQCLHVEE YQNLVKDLRT ELEAVSEQKK SITEDMLKLE LDLHRLQEET bmy_21904T0/1-1001 KDSECLRVEE YQNLVKDLRM ELEAVSEQKK NIMKDMMKLE LDLHGLREET BACU018157/1-280 ---------- ---------- ---------- --MKDTMKLE LDLHGLREET 401 450 ENSP00000237353/1-1007 SAHIERKDKD ITILQCRLQE LQLEFTETQK LTLKKDKFLQ EKDEMLQELE ENSBTAP00000017642/1-1023 SAHVERKDKE VIIMQRRLQE LQTQFTETQK LGLKKDKLLQ EKDEMLHELE ENSTTRP00000001798/1-922 SARLERKDKE VVILQQRLQE LQVQFTETQK LGLKKDKLLQ EKDEMLQELE bmy_21904T0/1-1001 SAHVERKDKE VVILQRRLQE LQVQFTETQK LGLKKDKVLQ ENDEMLHELE BACU018157/1-280 SAHVERKDKE VVVLQRRLLE LQVQFTETQK LGLKKDKLLQ EKDEMLHELE 451 500 ENSP00000237353/1-1007 KKLTQVQNSL LKKEKELEKQ QCMATELEMT VKEAKQDKSK EAECKALQAE ENSBTAP00000017642/1-1023 KELAQVQNNL VKKEMELEKQ QCMTNELEIA IQEERQDKCK -AEYGHLRAE ENSTTRP00000001798/1-922 KDLAQVKDTL VKKEMELEKQ QCMTRELEVA IQEERRDKCK -AEYGHLGAE bmy_21904T0/1-1001 KDLAQVKNTL IKKEMELEKQ QCMTSQLEIA IQEERQDKCK -AEYGHLGAE BACU018157/1-280 KDLAQVKNTL TKKEMELEKQ QCMTSELEIA IQEERQDKCK -AEYGHLGAE 501 550 ENSP00000237353/1-1007 VQKLKNSLEE AKQQERLAAQ QAAQCKEEAA LAGCHLEDTQ RKLQKGLLLD ENSBTAP00000017642/1-1023 IKKLKECLED AKQQQRLAAQ QAADYKEEVF MANDNLEDCQ RKLQSCICLE ENSTTRP00000001798/1-922 IKKLKDCLED AKQQHRLAAQ QAAQYKEEAI LAKGNLEDCH RKLQSCICLE bmy_21904T0/1-1001 IKKLKDCLED AKEQHRLAAQ QAAQYKEEAI LAKGNLEDCH RK-------- BACU018157/1-280 IKKLKDCLED AKQQHRLAAQ QAAQYKEEAI LAKGNLEDCH RKLQSCICLE 551 600 ENSP00000237353/1-1007 KQKADTIQEL QRELQMLQKE SSMAEKEQTS NRKRVEELSL ELSEALRKLE ENSBTAP00000017642/1-1023 KQKAETIQEL QRELQKLQKD SLTAEEELAP SRKRIEELTL EFSEVTRKLE ENSTTRP00000001798/1-922 KQKAETIQEL RRELQKLQKD SLMAEEELAP SRKRIEELTS ELSEFSRKLE bmy_21904T0/1-1001 ---------- ------LQKD SLMAEEELAL SRKRIEELTS ELSEFSRKLE BACU018157/1-280 KQKAETIQEL QRERQKLQKD SLMAEEELAL SRKRIEELTS ELSEFSRKLE 601 650 ENSP00000237353/1-1007 NSDKEKRQLQ KTVAEQDMKM NDMLDRIK-- -HQHREQGSI KCKLEEDLQE ENSBTAP00000017642/1-1023 LSEKEKRQLQ KTLAEQDIKL NEQLDRINHI QHQVRKASRL IAQLEEQLQE ENSTTRP00000001798/1-922 ISEKEKRQLQ KTVTEQDVKL NDLLDRINHI QHQNRKQASS KCSLEEQLQE bmy_21904T0/1-1001 ISEKEKRQLQ KTVTEQGVKL NDLLDRINHI QHQNRKQASS KCSLEEQLQE BACU018157/1-280 ISEKEKRQLQ KTVTEQDVKL NDLLDRISHI QHQE------ ---------- 651 700 ENSP00000237353/1-1007 ATKLLEDKRE QLKKSKEHEK LMEGELEALR QEFKKKDKTL KENSRKLEEE ENSBTAP00000017642/1-1023 ISRLLEDKKE QLKKSKEQQK LVEQELETFR LEGKRREKMS MENLRKMEEE ENSTTRP00000001798/1-922 ETRLLEEKQE QLKKSKEQEK LLQQELEIFR QEGKKKEKMS KENLRKLEEE bmy_21904T0/1-1001 ETRLLEEKRE QLKKSKEQEK LLEQELEIFR QEEKKKEKM- ---------- BACU018157/1-280 ---------- ---------- ---------- ---------- ---------- 701 750 ENSP00000237353/1-1007 NENLRAELQC CSTQLESSLN KYNTSQQVIQ DLNKEIALQK ESLMSLQAQL ENSBTAP00000017642/1-1023 NDNLKSQVKQ FSMQLDTSLY KQNSTQQINE ELTNKITSQK EIIASLKIQL ENSTTRP00000001798/1-922 NDNLKSQLKQ CSAQLDSSLC KQNSTQQINQ ELTRKIILQK ETMASLQIQL bmy_21904T0/1-1001 ---------- ---------- ---------- -----ITLQK ETMASLQIQL BACU018157/1-280 ---------- ---------- ---------- ---------- ---------- 751 800 ENSP00000237353/1-1007 DKALQKEKHY LQTTITKEAY DALSRKSAAC QDDLTQALE- ---------- ENSBTAP00000017642/1-1023 DKAGEKEKHY LQTMISKDVY EELCRKSACC QDDLTQALE- ---------- ENSTTRP00000001798/1-922 DKAAAKEKQY LQTTVSKDVY EEVCRKSASC QDDLTQALD- ---------- bmy_21904T0/1-1001 DKAAAKEKQY LQTTVSKEVY EEVCRKSASC QDDLTQALEK DSAERPKRND BACU018157/1-280 ---------- ---------- ---------- ---------- ---------- 801 850 ENSP00000237353/1-1007 ---------- -KLNHVTSET KSLQQSLTQT QEKKAQLEEE IIAYEERMKK ENSBTAP00000017642/1-1023 ---------- -KLNHSTSET KNLHRSLTQA QDRKLQLEEE IIAYEERMKK ENSTTRP00000001798/1-922 ---------- -KLSHSTSET KSLHQILTQA QDRKIQLEEE VIAYEERMKK bmy_21904T0/1-1001 SRSPPNPLSL PKLNHSTSET NSLHRSLTQA QDRKIQLEEE VIAYEERMKK BACU018157/1-280 ---------- ---------- ----ASLLQM QSRRTA---- ---------- 851 900 ENSP00000237353/1-1007 LNTELRKLRG FHQESELE-- ---------- -----VHAFD KKLEEMSCQV ENSBTAP00000017642/1-1023 LNGELKKLQG FQQQSELE-- ---------- -----VQAFD KKLEDMSSQV ENSTTRP00000001798/1-922 LNVELKKLQG FQQQSELE-- ---------- -----XXXXX XXXXXXXXXX bmy_21904T0/1-1001 LNVELKKLQG FQQQSELEGQ GGKPGSPSSL CATEQVQAFD KKLEDMSNQV BACU018157/1-280 ---------- ---------- ---PGG---- ---------- ---------- 901 950 ENSP00000237353/1-1007 LQWQKQHQND LKMLAAKEEQ LREFQEEMAA LKENLLEDDK EPCCLPQWSV ENSBTAP00000017642/1-1023 LQWQKQHQSD LKMLAAKEEQ LRAFQEEMCA LKENLLADEK EP-CLPQRSA ENSTTRP00000001798/1-922 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XSCCLSQRSA bmy_21904T0/1-1001 LQWQKQHQSD LKMLAAKEEQ LRAFQEEMRA LRENLLADER E------RSA BACU018157/1-280 ---------- ---------- ---------- ---------- N------QAA 951 1000 ENSP00000237353/1-1007 PKDTCRLYRG NDQIMTNLEQ WAKQQKVANE KLGNQLREQV KYIAKLSGEK ENSBTAP00000017642/1-1023 PKDNCKMHRE NDQIMSNMEQ WAKEQKIANE KLGNKLREQV KYIAKLTGEK ENSTTRP00000001798/1-922 PKDTCRLHRE NDQIMSNMEQ WAKEQKIANE KLGNKLREQV KYITKLTGEK bmy_21904T0/1-1001 PKDTCTLHRE NDQIMSNMEQ WAKEQKIANE KLGNKLREQV KYITKLTGEK BACU018157/1-280 GGETGAVEKE ---------- ---------- ---------- ---------- 1001 1050 ENSP00000237353/1-1007 DHLHSVMVHL QQENKKLKKE IEEKKMKAEN TRLCTKALGP SRTESTQREK ENSBTAP00000017642/1-1023 DHLHNVMVHL QKENKKLKHE IEEKKLKAGP SRVYAKALCQ SKTEPTIRGK ENSTTRP00000001798/1-922 ---------- ---------- ---------- ---------- ---------- bmy_21904T0/1-1001 DHLHDVLVHL QKENTKLKNE IEEKKLKAGP SRVYTKALCP SKTDPTSRGK BACU018157/1-280 ---------- ---------- ---------- ---------- ---------- 1051 1100 ENSP00000237353/1-1007 VCGTLGWKGL PQDMGQRMDL TKYIGMPHCP GSSYC ENSBTAP00000017642/1-1023 VYGTLGWRGI TQDVSQRMDI TKFVGIPHCS GSSFC ENSTTRP00000001798/1-922 ---------- ---------- ---------- ----- bmy_21904T0/1-1001 VYGTLGWRGI TQAVSQRMDI TKSVGMPHCS E---- BACU018157/1-280 ---------- ---------- ---------- -----