KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:02:24 2014 Check: 00 .. Name: ENSTTRP00000005867/1-418 Len: 715 Check: 1171 Weight: 1.00 Name: ENSP00000335612/1-469 Len: 715 Check: 8180 Weight: 1.00 Name: ENSBTAP00000017662/1-696 Len: 715 Check: 6768 Weight: 1.00 Name: bmy_08219T0/1-531 Len: 715 Check: 4122 Weight: 1.00 Name: BACU005690/1-680 Len: 715 Check: 3189 Weight: 1.00 // 1 50 ENSTTRP00000005867/1-418 ---------- ---------- ---------- ---------- ---------- ENSP00000335612/1-469 MDNRNTQMYT E--------- ---------- ---------- ---------- ENSBTAP00000017662/1-696 MDSGNTQMYV EDRIEAPGAR PSPGLRTASD RAGDEPTTSE VCQAVFPDAE bmy_08219T0/1-531 MDNRNAQMYV ECRIKAPEAQ PSPGLRTASN RAGVEPTISE VSQVVFPDAE BACU005690/1-680 MDNRNTQMYV ECRIKAPEAQ PSPGLRTASN RAGVEPTISE VRQVVFPDAE 51 100 ENSTTRP00000005867/1-418 ---------- ---------- ---------- ---------- ---------- ENSP00000335612/1-469 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000017662/1-696 AMDSGPQPAP ALGALETGPG HRDASEEGFP QLSPQEQKPP AGPGTKLSSW bmy_08219T0/1-531 GIDSGKQPSS APGGPEDGPR HREASEEGSP ELSTQEQMPP AGPRMKQSSL BACU005690/1-680 GIDSGKQPSS APGGPEDGPR HREASEEGSL ELSTQEQMPP AGPRMKQSSL 101 150 ENSTTRP00000005867/1-418 ---------- ---------- ---------- ---------- ---------- ENSP00000335612/1-469 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000017662/1-696 VPQEGRRELQ AHQDLATPGS ELGVPPNGVP VTQKGLQQQG SGKETEDQQG bmy_08219T0/1-531 VPQEGPGELQ AGQDQATPGS ELEVLPSRVP AAQERLQQQS SWKETEDQQG BACU005690/1-680 APQEGPGELQ AGQDQATPGS ELEVLPSRVP AAQERLQQQS SWKETEDQQG 151 200 ENSTTRP00000005867/1-418 ---------- ---------- ---------- ---------- ---------- ENSP00000335612/1-469 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000017662/1-696 SQQNPEPVEG QGPESRQGLG F----SFTLT SESDTVQPTE PYCTLDSCEQ bmy_08219T0/1-531 SQQNLGTVEG QFPESRQDPE CQPFPGHLAA NESDIVQPTE PCCTLDRHGQ BACU005690/1-680 SQQNLGTVEG QFPESRQDPE CQPLPGHLAA NESDIVQPTE PCCTLDSRGQ 201 250 ENSTTRP00000005867/1-418 ---------- ---------- ---------- ---------- ---------- ENSP00000335612/1-469 ---------- ---------- ---------- ---------- -----EEKTV ENSBTAP00000017662/1-696 QLEDKPPKEV DTPPIGPQRA LPEPGPGGCE DSSQEEVSLM PTATLEEKTV bmy_08219T0/1-531 QLGDKPPKEV DTPPIRPQGA LPEPGSGEHE DSSQEAMSLM PTATLEEKTA BACU005690/1-680 QLGDKPPKEV DTPPIRPQGA LPEPGSGGHE DSSQEAVSLM PTATLEEKTA 251 300 ENSTTRP00000005867/1-418 ---------- ---------- ---------- --EARDIGER REMDHTQKQP ENSP00000335612/1-469 NPFLPSTPGP KKAKGGGEAV ETHPAPGPLP PPEVRDIGER REPDRAQQQP ENSBTAP00000017662/1-696 HTAPPPRPRS DTPKARDEAV EIQPTLGPAR PPEAVDTGA- RGLDPTQKQP bmy_08219T0/1-531 HSSPLSMPRP NTPKERDKAV EIQAALGPVP PPEARDIGER REMDHTQKQP BACU005690/1-680 HSSPPSMPRP NTPKERDKAV AIQAALGPVP PPEARDIGER REMDHTQKQP 301 350 ENSTTRP00000005867/1-418 QDPAGATGAQ DLGNPRPGFM KCLLEVEEKA XXXXXXXXXX XXXXXXXXXX ENSP00000335612/1-469 QKPAVAAGTQ SLGNFRQGFM KCLLEVEKME ASHRRASKAR SQTAQKSPRT ENSBTAP00000017662/1-696 QEPAAATGAR DPGSARPGFM RRLLEVEEEE AALRRAAKAR ALPGRRCPRA bmy_08219T0/1-531 QEPAGATGAQ NLGNPRPGFM KCLLEVEEEE ATRWRVTKAR ALPNRKSPRT BACU005690/1-680 QEPAGATGAQ NLGNPRPGFM KCLLEVEEEE ATRWRVTKAR ALPNRKSPRT 351 400 ENSTTRP00000005867/1-418 XXXXXX---- -------XXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000335612/1-469 LTPVPT---- --SAPS---- LPQTPASVPA SGPSWARLPA PGPEPAPMGA ENSBTAP00000017662/1-696 LGPVPA---- --PAPSLPPP LPAAQAPASA SARAWARPPV PAPVPAPAGT bmy_08219T0/1-531 LAPVPVSAPV GNSAPTLPLT LPQTPASAPA MAPCWARPPA PGPLPAPMGA BACU005690/1-680 LAPVLVSAPV GNSAPILPLT LPQTPASAPA MAPCWARPPA PGPLPAPMGA 401 450 ENSTTRP00000005867/1-418 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000335612/1-469 PVPTSMPCPV LLGPALDLGW RRMELLHQSS ERTLSYAKAR QEPEEQSLQK ENSBTAP00000017662/1-696 PGPAPGPAAV LPVPASDLAW RRTELLSHSR ERSL---KAR QELEERCLLN bmy_08219T0/1-531 --PASVPVTV LPVPASDLGW RRTELLHHSG ERSLNYPKAR ---------- BACU005690/1-680 --PASVPVTV LPVPASDLGW RRTELLHHSG ERSLNYPKAR ---------- 451 500 ENSTTRP00000005867/1-418 XXXXX-XXXX XXXXXXXXXX FRSYFEIFSG HGEVDAQSLE NILLLVGMSL ENSP00000335612/1-469 LYQNR-EKSE EQLTLKQEEA FRSYFEIFNG PGEVDAQSLK NILLLMGFSV ENSBTAP00000017662/1-696 VCQTWEERAE EHLTMKQEEA FRSYFEIFNG HGEVDAQSLE NILLLVGISL bmy_08219T0/1-531 ---------- ---------- ---------- ------QELE EHCLLKVRQT BACU005690/1-680 ---------- ---------- ---YFEIFSG HGEVDAQSLE NILLLVGISV 501 550 ENSTTRP00000005867/1-418 TPAPVEDALR SADIDGDGHV NFKDFLAVMT DTKSFFCVAE KA--TDMAPP ENSP00000335612/1-469 TLAQVEDALM SADVNGDGRV DFKDFLAVMT DTRRFFCSVE QNALSDMAPH ENSBTAP00000017662/1-696 TTAQVEGALR SADIDGDGHV NFKDFLTVMT DTRRFFCSVE QNALMDMAPP bmy_08219T0/1-531 WEEMSEEHLT LKQEEGDGHV NFKDFLAVMT DTKRFFCSVE EKALTDTAPP BACU005690/1-680 TPAQVEDALS SADIDGDGHV NFEDFLAVMT DTKRFFCSVE EKALTDTAPP 551 600 ENSTTRP00000005867/1-418 NPRTLLFEIL SLLVEMLALP EAALEEITSY YQKKLKEGTC KARGMEPAIG ENSP00000335612/1-469 NPHTLLFEIL SLLVEMLALP EAVLEEITNY YQKKLKEGTC KAQEMEAAVG ENSBTAP00000017662/1-696 NPDTLFFEIL SLLVEMLALP EGALEEITSY YQRKLKEGAC KARETESATG bmy_08219T0/1-531 NPRTLLFEIL SLLVEMLALP EAALEEITR- ---------- ---------- BACU005690/1-680 NPRTLLFEIL SLLVEMLALP EAALEEITSY YQKKLKEGTC KAQEMEPAIG 601 650 ENSTTRP00000005867/1-418 QLQSQKKLPY NPQQADSLEV PERRALRILS QLKQQNYAAN LQSPYAQVPC ENSP00000335612/1-469 RLRLQ-KLPY NPQQEESSEV PERKVLSILS RLKQQNYAPN LQSPYAQVPC ENSBTAP00000017662/1-696 RLRPRKKLPY SPPQADTLEI PERRVLRVLS RLKQQNYAAN LQSPYAQVPC bmy_08219T0/1-531 ---------- ---------- ---------- ---------- ---------- BACU005690/1-680 RLRSRKKLPY NLQQADTLEV PERRALRILS QLKQQNYAAN LQSPYAQVPC 651 700 ENSTTRP00000005867/1-418 IPLCPRLD-N TVRRKQGSHY MLELCTPTSL GPDTRSLFFQ TRSQGSREPS ENSP00000335612/1-469 ILLCPQLDKK MVRRQPSNHY ALDQCTPPGL DPDIRSPFFQ SGSQGNREHN ENSBTAP00000017662/1-696 IPLCPRLDKK TVRRKQGGHY ELEQCPSPGL GPDIHSILLH TGSQGGREPG bmy_08219T0/1-531 ---------- ---------- ---------- ---------- ---------- BACU005690/1-680 IPLCPRLDKN TVRQKQGSHY VLELCTPTSL GPDTRSLFFQ TGSQRSREPS 701 750 ENSTTRP00000005867/1-418 SDSRKWLSSV PARTH ENSP00000335612/1-469 SDSRKWLSSV PARTH ENSBTAP00000017662/1-696 R-----LSSV PARTH bmy_08219T0/1-531 ---------- ----- BACU005690/1-680 SDSRMWLSSV PARTH