KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 17:02:24 2014 Check: 00 .. Name: ENSP00000391942/1-273 Len: 289 Check: 9643 Weight: 1.00 Name: ENSBTAP00000017663/1-266 Len: 289 Check: 847 Weight: 1.00 Name: bmy_08218T0/1-267 Len: 289 Check: 1807 Weight: 1.00 Name: BACU018223/1-266 Len: 289 Check: 531 Weight: 1.00 // 1 50 ENSP00000391942/1-273 MEESGYESVL CVKPDVHVYR IPPRATNRGY RAAEWQLDQP SWSGRLRITA ENSBTAP00000017663/1-266 MEEAEYESVL CVKPDVHVYR IPPRATNRGY RAAEWQLDQP SWSGRLRITA bmy_08218T0/1-267 MEEGEYESVL CVKPEVHVYR IPPRATNRGY RAAEWQLDQP SWSGRLRITA BACU018223/1-266 MEEGEYESVL CVKPEVHVYR IPPRATNRGY RAAEWQLDQP SWSGRLRITA 51 100 ENSP00000391942/1-273 KGQMAYIKLE DRTSGELFAQ APVDQFPGTA VESVTDSSRY FVIRIEDGNG ENSBTAP00000017663/1-266 KGQVAYIKLE DRTSGELFAQ APVDQFPGTA VESVTDSSRY FVIRIEDGNG bmy_08218T0/1-267 KGQVAYIKLE DRTSGELFAQ APVDQFPGTA VESVMDSSRY FVIRIEDGNG BACU018223/1-266 KGQVAYIKLE DRTSGELFAQ APVDQFPGTA VESVMDSSRY FVIRIEDGNG 101 150 ENSP00000391942/1-273 RRAFIGIGFG DRGDAFDFNV ALQDHF---- ---------- --KWVKQQCE ENSBTAP00000017663/1-266 RRAFIGIGFG DRGDAFDFNV ALQDHF---- ---------- --KWVKQQCE bmy_08218T0/1-267 RRAFIGIGFG DRGDAFDFNV ALQDHFNCYP AAAVKASSWT GGRWVKQQCE BACU018223/1-266 RRAFIGIGFG DRGDAFDFNV ALQDHF---- ---------- --KWVKQQCE 151 200 ENSP00000391942/1-273 FAKQAQNPDQ GPKLDLGFKE GQTIKLNIAN MKKKEGAAGN PRVRPASTGG ENSBTAP00000017663/1-266 FAKQAQNPDQ GPKLDLSFKE GQTIKLNIAS MKKKDGAAGT PRARPTSTGG bmy_08218T0/1-267 FAKQAENPDQ GPKLDLSFKE GQTIKLNIAN MKKREGAAGT PRARPASTGG BACU018223/1-266 FAKQAENPDQ GPKLDLSFKE GQTIKLNIAN MKKKEGAAGT PRARPASTGG 201 250 ENSP00000391942/1-273 LSLLPPPPGG KTSTLIPPPG EQLAVGGSLV QPAVAPSSDQ LPARPSQAQA ENSBTAP00000017663/1-266 LSLLPPPPGA KTAALAPLSG EHLSVGGSVV QPAVSPSSGG ATVSWPQPKP bmy_08218T0/1-267 LSLLPPPPGG KTSTLIPPPG EQLSVGASIV QPAVAPSSGG ATVSWPQPKP BACU018223/1-266 LSLLPPPPGG KTSTLIPPPG EQLSVGASIV QPAVAPSSGG ATVSWPQPKP 251 300 ENSP00000391942/1-273 GSSSDLSTVF PHVTSGKALP HLGQRKEDEA LLSWPVFGA ENSBTAP00000017663/1-266 ATTAT-ADIW GDFTKSTG-- --STSSQTQP GAGWVQF-- bmy_08218T0/1-267 AATAT-ADIW GDFTKSTG-- ---------- --------- BACU018223/1-266 AATAT-ADIW GDFTKSTG-- --STSSQTQP GTGWVQF--