KEY:
ENSP* - Homo sapiens (Human)
ENSBTA* - Bos taurus (Cow)
ENSTTR* - Tursiops truncatus (Dolphin)
bmy_* - Balaena mysticetus (Bowhead whale)
BACU* - Balaenoptera acutorostrata (Minke whale)
Copy from below the line for a valid .msf file.
----------------------------------------------------------------------------------
NoName MSF: 5 Type: P Thu May 15 17:02:25 2014 Check: 00 ..
Name: BACU006809/1-940 Len: 950 Check: 6956 Weight: 1.00
Name: ENSP00000249373/1-787 Len: 950 Check: 3969 Weight: 1.00
Name: ENSBTAP00000017670/1-780 Len: 950 Check: 8511 Weight: 1.00
Name: bmy_08079T0/1-782 Len: 950 Check: 7932 Weight: 1.00
Name: ENSTTRP00000008000/1-782 Len: 950 Check: 7013 Weight: 1.00
//
1 50
BACU006809/1-940 -MARRPGAPA AYGEDFSFVS PLVKYLLFFF NMLFWFSLCL TIVFLLQLAA
ENSP00000249373/1-787 MAAARPAR-- --GPEL---- PLLGLLLLLL ---------- ----------
ENSBTAP00000017670/1-780 MAAARLAR-- --GPEL---- LLLGLLLLL- ---------- ----------
bmy_08079T0/1-782 MAAARLAR-- --GPAL---- LLLGLLLLLL ---------- ----------
ENSTTRP00000008000/1-782 MAADRLAR-- --GPAL---- LLLGLLLLLL ---------- ----------
51 100
BACU006809/1-940 GVLGFVFSDK ARGKVSEIIN NAIVHYRDDL DLQNLIDFGQ KKFGCCGGIS
ENSP00000249373/1-787 ------LGDP GRG------- ---------- ---------- ---AASSG--
ENSBTAP00000017670/1-780 -------GGP GRG------- ---------- ---------- ---AALSG--
bmy_08079T0/1-782 ------LGGP GRG------- ---------- ---------- ---AALSG--
ENSTTRP00000008000/1-782 ------LGGP GRG------- ---------- ---------- ---AALSG--
101 150
BACU006809/1-940 YKDWSLNMYF NCSEDNPSRE RCSVPYSCCL PTPNQAVINT MCGQGMQALD
ENSP00000249373/1-787 ---------- NATGPGPRSA GGSARRSAAV TGP------- ----------
ENSBTAP00000017670/1-780 ---------- NATRPGPWSA GGSARRSAAV TGP------- ----------
bmy_08079T0/1-782 ---------- NATRPGPRSA GGSARRSAAV TGP------- ----------
ENSTTRP00000008000/1-782 ---------- NATRPGPRSA GGSARRSAAV TGP------- ----------
151 200
BACU006809/1-940 YLEASKVIYT NGCIDRLVNW IHSNLFVLGG VALGLAIPQL VGILLSMILV
ENSP00000249373/1-787 ---------- ---------- ---------- -------PPP L---------
ENSBTAP00000017670/1-780 ---------- ---------- ---------- -------PPL L---------
bmy_08079T0/1-782 ---------- ---------- ---------- -------PPL L---------
ENSTTRP00000008000/1-782 ---------- ---------- ---------- -------PPL L---------
201 250
BACU006809/1-940 SQIKDQIKLQ LYNQQHRADP CHCGRATPCE PLRYNVCLGS ALPYGATSTL
ENSP00000249373/1-787 ---------- ---------- SHCGRAAPCE PLRYNVCLGS VLPYGATSTL
ENSBTAP00000017670/1-780 ---------- ---------- SHCGRAAPCE PLRYNVCLGS ALPYGATSTL
bmy_08079T0/1-782 ---------- ---------- SHCGRATPCE PLRYNVCLGS ALPYGATSTL
ENSTTRP00000008000/1-782 ---------- ---------- SHCGRAAPCE PLRYNVCLGS ALPYGATSTL
251 300
BACU006809/1-940 LAGDSDSQEE AHGKLVLWSG LRNAPRCWAV IQPLLCAVYM PKCENNRVEL
ENSP00000249373/1-787 LAGDSDSQEE AHGKLVLWSG LRNAPRCWAV IQPLLCAVYM PKCENDRVEL
ENSBTAP00000017670/1-780 LAGDSDSQEE AHGKLVLWSG LRNAPRCWAV IQPLLCAVYM PKCENDRVEL
bmy_08079T0/1-782 LAGDSDSQEE AHGKLVLWSG LRNAPRCWAV IQPLLCAVYM PKCENNRVEL
ENSTTRP00000008000/1-782 LAGDSDSQEE AHGKLVLWSG LRNAPRCWAV IQPLLCAVYM PKCENNRVEL
301 350
BACU006809/1-940 PSRTLCQATR GPCAIVERER GWPDFLRCTP DHFPEGCPNE VQNIKFNSSG
ENSP00000249373/1-787 PSRTLCQATR GPCAIVERER GWPDFLRCTP DRFPEGCTNE VQNIKFNSSG
ENSBTAP00000017670/1-780 PSRTLCQATR GPCAIVERER GWPDFLRCTP DHFPEGCPNE VQNIKFNSSG
bmy_08079T0/1-782 PSRTLCQATR GPCAIVERER GWPDFLRCTP DHFPEGCPNE VQNIKFNSSG
ENSTTRP00000008000/1-782 PSRTLCQATR GPCAIVERER GWPDFLRCTP DHFPEGCPNE VQNIKFNSSG
351 400
BACU006809/1-940 QCEAPLVRTD NPKSWYEDVE GCGIQCQNPL FTEAEHQDMH SYIAAFGAVT
ENSP00000249373/1-787 QCEVPLVRTD NPKSWYEDVE GCGIQCQNPL FTEAEHQDMH SYIAAFGAVT
ENSBTAP00000017670/1-780 QCEAPLVRTD NPKSWYEDVE GCGIQCQNPL FTEAEHQDMH SYIAAFGAVT
bmy_08079T0/1-782 QCEAPLVRTD NPKSWYEDVE GCGIQCQNPL FTEAEHQDMH SYIAAFGAVT
ENSTTRP00000008000/1-782 QCEAPLVRTD NPKSWYEDVE GCGIQCQNPL FTEAEHQDMH SYIAAFGAVT
401 450
BACU006809/1-940 GLCTLFTLAT FVADWRNSNR YPAVILFYVN ACFFVGSIGW LAQFMDGARR
ENSP00000249373/1-787 GLCTLFTLAT FVADWRNSNR YPAVILFYVN ACFFVGSIGW LAQFMDGARR
ENSBTAP00000017670/1-780 GLCTLFTLAT FVADWRNSNR YPAVILFYVN ACFFVGSIGW LAQFMDGARR
bmy_08079T0/1-782 GLCTLFTLAT FVADWRNSNR YPAVILFYVN ACFFVGSIGW LAQFMDGARR
ENSTTRP00000008000/1-782 GLCTLFTLAT FVADWRNSNR YPAVILFYVN ACFFVGSIGW LAQFMDGARR
451 500
BACU006809/1-940 EIVCRADGTM RLGEPTSNET LSCVIIFVIV YYALMAGVVW FVVLTYAWHT
ENSP00000249373/1-787 EIVCRADGTM RLGEPTSNET LSCVIIFVIV YYALMAGVVW FVVLTYAWHT
ENSBTAP00000017670/1-780 EIVCRADGTM RLGEPTSNET LSCVIIFVIV YYALMAGVVW FVVLTYAWHT
bmy_08079T0/1-782 EIVCRADGTM RLGEPTSNET LSCVIIFVIV YYALMAGVVW FVVLTYAWHT
ENSTTRP00000008000/1-782 EIVCRADGTM RLGEPTSNET LSCVIIFVIV YYALMAGVVW FVVLTYAWHT
501 550
BACU006809/1-940 SFKALGTTYQ PLSGKTSYFH LLTWSLPFVL TVAILAVAQV DGDSVSGICF
ENSP00000249373/1-787 SFKALGTTYQ PLSGKTSYFH LLTWSLPFVL TVAILAVAQV DGDSVSGICF
ENSBTAP00000017670/1-780 SFKALGTTYQ PLSGKTSYFH LLTWSLPFVL TVAILAVAQV DGDSVSGICF
bmy_08079T0/1-782 SFKALGTTYQ PLSGKTSYFH LLTWSLPFVL TVAILAVAQV DGDSVSGICF
ENSTTRP00000008000/1-782 SFKALGTTYQ PLSGKTSYFH LLTWSLPFVL TVAILAVAQV DGDSVSGICF
551 600
BACU006809/1-940 VGYKNYRYRA GFVLAPIGLV LIVGGYFLIR GVMTLFSIKS NHPGLLSEKA
ENSP00000249373/1-787 VGYKNYRYRA GFVLAPIGLV LIVGGYFLIR GVMTLFSIKS NHPGLLSEKA
ENSBTAP00000017670/1-780 VGYKNYRYRA GFVLAPIGLV LIVGGYFLIR GVMTLFSIKS NHPGLLSEKA
bmy_08079T0/1-782 VGYKNYRYRA GFVLAPIGLV LIVGGYFLIR GVMTLFSIKS NHPGLLSEKA
ENSTTRP00000008000/1-782 VGYKNYRYRA GFVLAPIGLV LIVGGYFLIR GVMTLFSIKS NHPGLLSEKA
601 650
BACU006809/1-940 ASKINETMLR LGIFGFLAFG FVLITFSCHF YDFFNQAEWE RSFRDYVLCQ
ENSP00000249373/1-787 ASKINETMLR LGIFGFLAFG FVLITFSCHF YDFFNQAEWE RSFRDYVLCQ
ENSBTAP00000017670/1-780 ASKINETMLR LGIFGFLAFG FVLITFSCHF YDFFNQAEWE RSFRDYVLCQ
bmy_08079T0/1-782 ASKINETMLR LGIFGFLAFG FVLITFSCHF YDFFNQAEWE RSFRDYVLCQ
ENSTTRP00000008000/1-782 ASKINETMLR LGIFGFLAFG FVLITFSCHF YDFFNQAEWE RSFRDYVLCQ
651 700
BACU006809/1-940 ANVTIGLPTK KPIPDCEIKN RPSLLVEKIN LFAMFGTGIA MSTWVWTKAT
ENSP00000249373/1-787 ANVTIGLPTK QPIPDCEIKN RPSLLVEKIN LFAMFGTGIA MSTWVWTKAT
ENSBTAP00000017670/1-780 ANVTIGLPTK KPIPDCEIKN RPSLLVEKIN LFAMFGTGIS MSTWVWTKAT
bmy_08079T0/1-782 ANVTIGLPTK KPIPDCEIKN RPSLLVEKIN LFAMFGTGIA MSTWVWTKAT
ENSTTRP00000008000/1-782 ANVTIGLPTK KPIPDCEIKN RPSLLVEKIN LFAMFGTGIA MSTWVWTKAT
701 750
BACU006809/1-940 LLIWRRTWCR LTGQSDDEPK RIKKSKMIAK AFSKRRELLQ NPGQELSFSM
ENSP00000249373/1-787 LLIWRRTWCR LTGQSDDEPK RIKKSKMIAK AFSKRHELLQ NPGQELSFSM
ENSBTAP00000017670/1-780 LLIWRRTWCR LTGQSDDEPK RIKKSKMIAK AFSKRRELLQ NPGQELSFSM
bmy_08079T0/1-782 LLIWRRTWCR LTGQSDDEPK RIKKSKMIAK AFSKRRELLQ NPGQELSFSM
ENSTTRP00000008000/1-782 LLIWRRTWCR LTGQSDDEPK RIKKSKMIAK AFSKRRELLQ NPGQELSFSM
751 800
BACU006809/1-940 HTVSHDGPVA GLAFDLNEPS ADVSSAWAQH VTKMVARRGA ILPQDVSVTP
ENSP00000249373/1-787 HTVSHDGPVA GLAFDLNEPS ADVSSAWAQH VTKMVARRGA ILPQDISVTP
ENSBTAP00000017670/1-780 HTVSHDGPVA GLAFDLNEPS ADVSSAWAQH VTKMVARRGA ILPQDVSVTP
bmy_08079T0/1-782 HTVSHDGPVA GLVFDLNEPS ADVSSAWAQH VTKMVARRGA ILPQDVSVTP
ENSTTRP00000008000/1-782 HTVSHDGPVA GLAFDLNEPS ADVSSAWAQH VTKMVARRGA ILPQDVSVTP
801 850
BACU006809/1-940 VATPVPPEEK ANLWLVEAEI SPELEKRLGR RKKRRKRKKE VCPLVSPPEL
ENSP00000249373/1-787 VATPVPPEEQ ANLWLVEAEI SPELQKRLGR KKKRRKRKKE VCPLAPPPEL
ENSBTAP00000017670/1-780 VATPVPPEEK ANLWLVEAEI SPELEKRLGR KKKRRKRKKE VCPLVPPPEL
bmy_08079T0/1-782 VATPVPPEEK ANLWLVEAEI SPELEKRLGR RKKRRKRKKE VCPLVSPPEL
ENSTTRP00000008000/1-782 VATPVPPEEK ANLWLVEAEI SPELEKRLGR RKKRRKRKKE VCPLVSPPEL
851 900
BACU006809/1-940 HHPVPGPAPA SSAVPRLPQL PRQKCLVAAG AWGAGDSYRQ GAWTLVSNPF
ENSP00000249373/1-787 HPPAPAP--- -STIPRLPQL PRQKCLVAAG AWGAGDSCRQ GAWTLVSNPF
ENSBTAP00000017670/1-780 HLPALGPASA SSAVPRLPQL PRQKCLVAAG AWGPGESCRP GAWTLVSNPF
bmy_08079T0/1-782 HHPAPGPAPA SSAVPRLPQL PRQKCLVAAG AWGAGDSYRQ GAWTLVSNPF
ENSTTRP00000008000/1-782 HHPAPGPAPA SSAVPRLPQL PRQKCLVAAG AWGAGETYRQ GAWTLVSNPF
901 950
BACU006809/1-940 CPE------- --PSAPAPMA WAQGRRQGLG PIHSRTNLME AELMDADSDF
ENSP00000249373/1-787 CPEPSPPQDP FLPSAPAPVA WAHGRRQGLG PIHSRTNLMD TELMDADSDF
ENSBTAP00000017670/1-780 CPE------- --PSAPAPVA WAQGRRQGLG PIHSRTNLME AELMDADSDF
bmy_08079T0/1-782 CPE------- --PSAPAPLA WAQGRRQGLG PIHSRTNLME AELMDADSDF
ENSTTRP00000008000/1-782 CPE------- --PSAAAPMA WAQGRRQGLG PIHSRTNLME AELMDADSDF