KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:02:25 2014 Check: 00 .. Name: BACU006809/1-940 Len: 950 Check: 6956 Weight: 1.00 Name: ENSP00000249373/1-787 Len: 950 Check: 3969 Weight: 1.00 Name: ENSBTAP00000017670/1-780 Len: 950 Check: 8511 Weight: 1.00 Name: bmy_08079T0/1-782 Len: 950 Check: 7932 Weight: 1.00 Name: ENSTTRP00000008000/1-782 Len: 950 Check: 7013 Weight: 1.00 // 1 50 BACU006809/1-940 -MARRPGAPA AYGEDFSFVS PLVKYLLFFF NMLFWFSLCL TIVFLLQLAA ENSP00000249373/1-787 MAAARPAR-- --GPEL---- PLLGLLLLLL ---------- ---------- ENSBTAP00000017670/1-780 MAAARLAR-- --GPEL---- LLLGLLLLL- ---------- ---------- bmy_08079T0/1-782 MAAARLAR-- --GPAL---- LLLGLLLLLL ---------- ---------- ENSTTRP00000008000/1-782 MAADRLAR-- --GPAL---- LLLGLLLLLL ---------- ---------- 51 100 BACU006809/1-940 GVLGFVFSDK ARGKVSEIIN NAIVHYRDDL DLQNLIDFGQ KKFGCCGGIS ENSP00000249373/1-787 ------LGDP GRG------- ---------- ---------- ---AASSG-- ENSBTAP00000017670/1-780 -------GGP GRG------- ---------- ---------- ---AALSG-- bmy_08079T0/1-782 ------LGGP GRG------- ---------- ---------- ---AALSG-- ENSTTRP00000008000/1-782 ------LGGP GRG------- ---------- ---------- ---AALSG-- 101 150 BACU006809/1-940 YKDWSLNMYF NCSEDNPSRE RCSVPYSCCL PTPNQAVINT MCGQGMQALD ENSP00000249373/1-787 ---------- NATGPGPRSA GGSARRSAAV TGP------- ---------- ENSBTAP00000017670/1-780 ---------- NATRPGPWSA GGSARRSAAV TGP------- ---------- bmy_08079T0/1-782 ---------- NATRPGPRSA GGSARRSAAV TGP------- ---------- ENSTTRP00000008000/1-782 ---------- NATRPGPRSA GGSARRSAAV TGP------- ---------- 151 200 BACU006809/1-940 YLEASKVIYT NGCIDRLVNW IHSNLFVLGG VALGLAIPQL VGILLSMILV ENSP00000249373/1-787 ---------- ---------- ---------- -------PPP L--------- ENSBTAP00000017670/1-780 ---------- ---------- ---------- -------PPL L--------- bmy_08079T0/1-782 ---------- ---------- ---------- -------PPL L--------- ENSTTRP00000008000/1-782 ---------- ---------- ---------- -------PPL L--------- 201 250 BACU006809/1-940 SQIKDQIKLQ LYNQQHRADP CHCGRATPCE PLRYNVCLGS ALPYGATSTL ENSP00000249373/1-787 ---------- ---------- SHCGRAAPCE PLRYNVCLGS VLPYGATSTL ENSBTAP00000017670/1-780 ---------- ---------- SHCGRAAPCE PLRYNVCLGS ALPYGATSTL bmy_08079T0/1-782 ---------- ---------- SHCGRATPCE PLRYNVCLGS ALPYGATSTL ENSTTRP00000008000/1-782 ---------- ---------- SHCGRAAPCE PLRYNVCLGS ALPYGATSTL 251 300 BACU006809/1-940 LAGDSDSQEE AHGKLVLWSG LRNAPRCWAV IQPLLCAVYM PKCENNRVEL ENSP00000249373/1-787 LAGDSDSQEE AHGKLVLWSG LRNAPRCWAV IQPLLCAVYM PKCENDRVEL ENSBTAP00000017670/1-780 LAGDSDSQEE AHGKLVLWSG LRNAPRCWAV IQPLLCAVYM PKCENDRVEL bmy_08079T0/1-782 LAGDSDSQEE AHGKLVLWSG LRNAPRCWAV IQPLLCAVYM PKCENNRVEL ENSTTRP00000008000/1-782 LAGDSDSQEE AHGKLVLWSG LRNAPRCWAV IQPLLCAVYM PKCENNRVEL 301 350 BACU006809/1-940 PSRTLCQATR GPCAIVERER GWPDFLRCTP DHFPEGCPNE VQNIKFNSSG ENSP00000249373/1-787 PSRTLCQATR GPCAIVERER GWPDFLRCTP DRFPEGCTNE VQNIKFNSSG ENSBTAP00000017670/1-780 PSRTLCQATR GPCAIVERER GWPDFLRCTP DHFPEGCPNE VQNIKFNSSG bmy_08079T0/1-782 PSRTLCQATR GPCAIVERER GWPDFLRCTP DHFPEGCPNE VQNIKFNSSG ENSTTRP00000008000/1-782 PSRTLCQATR GPCAIVERER GWPDFLRCTP DHFPEGCPNE VQNIKFNSSG 351 400 BACU006809/1-940 QCEAPLVRTD NPKSWYEDVE GCGIQCQNPL FTEAEHQDMH SYIAAFGAVT ENSP00000249373/1-787 QCEVPLVRTD NPKSWYEDVE GCGIQCQNPL FTEAEHQDMH SYIAAFGAVT ENSBTAP00000017670/1-780 QCEAPLVRTD NPKSWYEDVE GCGIQCQNPL FTEAEHQDMH SYIAAFGAVT bmy_08079T0/1-782 QCEAPLVRTD NPKSWYEDVE GCGIQCQNPL FTEAEHQDMH SYIAAFGAVT ENSTTRP00000008000/1-782 QCEAPLVRTD NPKSWYEDVE GCGIQCQNPL FTEAEHQDMH SYIAAFGAVT 401 450 BACU006809/1-940 GLCTLFTLAT FVADWRNSNR YPAVILFYVN ACFFVGSIGW LAQFMDGARR ENSP00000249373/1-787 GLCTLFTLAT FVADWRNSNR YPAVILFYVN ACFFVGSIGW LAQFMDGARR ENSBTAP00000017670/1-780 GLCTLFTLAT FVADWRNSNR YPAVILFYVN ACFFVGSIGW LAQFMDGARR bmy_08079T0/1-782 GLCTLFTLAT FVADWRNSNR YPAVILFYVN ACFFVGSIGW LAQFMDGARR ENSTTRP00000008000/1-782 GLCTLFTLAT FVADWRNSNR YPAVILFYVN ACFFVGSIGW LAQFMDGARR 451 500 BACU006809/1-940 EIVCRADGTM RLGEPTSNET LSCVIIFVIV YYALMAGVVW FVVLTYAWHT ENSP00000249373/1-787 EIVCRADGTM RLGEPTSNET LSCVIIFVIV YYALMAGVVW FVVLTYAWHT ENSBTAP00000017670/1-780 EIVCRADGTM RLGEPTSNET LSCVIIFVIV YYALMAGVVW FVVLTYAWHT bmy_08079T0/1-782 EIVCRADGTM RLGEPTSNET LSCVIIFVIV YYALMAGVVW FVVLTYAWHT ENSTTRP00000008000/1-782 EIVCRADGTM RLGEPTSNET LSCVIIFVIV YYALMAGVVW FVVLTYAWHT 501 550 BACU006809/1-940 SFKALGTTYQ PLSGKTSYFH LLTWSLPFVL TVAILAVAQV DGDSVSGICF ENSP00000249373/1-787 SFKALGTTYQ PLSGKTSYFH LLTWSLPFVL TVAILAVAQV DGDSVSGICF ENSBTAP00000017670/1-780 SFKALGTTYQ PLSGKTSYFH LLTWSLPFVL TVAILAVAQV DGDSVSGICF bmy_08079T0/1-782 SFKALGTTYQ PLSGKTSYFH LLTWSLPFVL TVAILAVAQV DGDSVSGICF ENSTTRP00000008000/1-782 SFKALGTTYQ PLSGKTSYFH LLTWSLPFVL TVAILAVAQV DGDSVSGICF 551 600 BACU006809/1-940 VGYKNYRYRA GFVLAPIGLV LIVGGYFLIR GVMTLFSIKS NHPGLLSEKA ENSP00000249373/1-787 VGYKNYRYRA GFVLAPIGLV LIVGGYFLIR GVMTLFSIKS NHPGLLSEKA ENSBTAP00000017670/1-780 VGYKNYRYRA GFVLAPIGLV LIVGGYFLIR GVMTLFSIKS NHPGLLSEKA bmy_08079T0/1-782 VGYKNYRYRA GFVLAPIGLV LIVGGYFLIR GVMTLFSIKS NHPGLLSEKA ENSTTRP00000008000/1-782 VGYKNYRYRA GFVLAPIGLV LIVGGYFLIR GVMTLFSIKS NHPGLLSEKA 601 650 BACU006809/1-940 ASKINETMLR LGIFGFLAFG FVLITFSCHF YDFFNQAEWE RSFRDYVLCQ ENSP00000249373/1-787 ASKINETMLR LGIFGFLAFG FVLITFSCHF YDFFNQAEWE RSFRDYVLCQ ENSBTAP00000017670/1-780 ASKINETMLR LGIFGFLAFG FVLITFSCHF YDFFNQAEWE RSFRDYVLCQ bmy_08079T0/1-782 ASKINETMLR LGIFGFLAFG FVLITFSCHF YDFFNQAEWE RSFRDYVLCQ ENSTTRP00000008000/1-782 ASKINETMLR LGIFGFLAFG FVLITFSCHF YDFFNQAEWE RSFRDYVLCQ 651 700 BACU006809/1-940 ANVTIGLPTK KPIPDCEIKN RPSLLVEKIN LFAMFGTGIA MSTWVWTKAT ENSP00000249373/1-787 ANVTIGLPTK QPIPDCEIKN RPSLLVEKIN LFAMFGTGIA MSTWVWTKAT ENSBTAP00000017670/1-780 ANVTIGLPTK KPIPDCEIKN RPSLLVEKIN LFAMFGTGIS MSTWVWTKAT bmy_08079T0/1-782 ANVTIGLPTK KPIPDCEIKN RPSLLVEKIN LFAMFGTGIA MSTWVWTKAT ENSTTRP00000008000/1-782 ANVTIGLPTK KPIPDCEIKN RPSLLVEKIN LFAMFGTGIA MSTWVWTKAT 701 750 BACU006809/1-940 LLIWRRTWCR LTGQSDDEPK RIKKSKMIAK AFSKRRELLQ NPGQELSFSM ENSP00000249373/1-787 LLIWRRTWCR LTGQSDDEPK RIKKSKMIAK AFSKRHELLQ NPGQELSFSM ENSBTAP00000017670/1-780 LLIWRRTWCR LTGQSDDEPK RIKKSKMIAK AFSKRRELLQ NPGQELSFSM bmy_08079T0/1-782 LLIWRRTWCR LTGQSDDEPK RIKKSKMIAK AFSKRRELLQ NPGQELSFSM ENSTTRP00000008000/1-782 LLIWRRTWCR LTGQSDDEPK RIKKSKMIAK AFSKRRELLQ NPGQELSFSM 751 800 BACU006809/1-940 HTVSHDGPVA GLAFDLNEPS ADVSSAWAQH VTKMVARRGA ILPQDVSVTP ENSP00000249373/1-787 HTVSHDGPVA GLAFDLNEPS ADVSSAWAQH VTKMVARRGA ILPQDISVTP ENSBTAP00000017670/1-780 HTVSHDGPVA GLAFDLNEPS ADVSSAWAQH VTKMVARRGA ILPQDVSVTP bmy_08079T0/1-782 HTVSHDGPVA GLVFDLNEPS ADVSSAWAQH VTKMVARRGA ILPQDVSVTP ENSTTRP00000008000/1-782 HTVSHDGPVA GLAFDLNEPS ADVSSAWAQH VTKMVARRGA ILPQDVSVTP 801 850 BACU006809/1-940 VATPVPPEEK ANLWLVEAEI SPELEKRLGR RKKRRKRKKE VCPLVSPPEL ENSP00000249373/1-787 VATPVPPEEQ ANLWLVEAEI SPELQKRLGR KKKRRKRKKE VCPLAPPPEL ENSBTAP00000017670/1-780 VATPVPPEEK ANLWLVEAEI SPELEKRLGR KKKRRKRKKE VCPLVPPPEL bmy_08079T0/1-782 VATPVPPEEK ANLWLVEAEI SPELEKRLGR RKKRRKRKKE VCPLVSPPEL ENSTTRP00000008000/1-782 VATPVPPEEK ANLWLVEAEI SPELEKRLGR RKKRRKRKKE VCPLVSPPEL 851 900 BACU006809/1-940 HHPVPGPAPA SSAVPRLPQL PRQKCLVAAG AWGAGDSYRQ GAWTLVSNPF ENSP00000249373/1-787 HPPAPAP--- -STIPRLPQL PRQKCLVAAG AWGAGDSCRQ GAWTLVSNPF ENSBTAP00000017670/1-780 HLPALGPASA SSAVPRLPQL PRQKCLVAAG AWGPGESCRP GAWTLVSNPF bmy_08079T0/1-782 HHPAPGPAPA SSAVPRLPQL PRQKCLVAAG AWGAGDSYRQ GAWTLVSNPF ENSTTRP00000008000/1-782 HHPAPGPAPA SSAVPRLPQL PRQKCLVAAG AWGAGETYRQ GAWTLVSNPF 901 950 BACU006809/1-940 CPE------- --PSAPAPMA WAQGRRQGLG PIHSRTNLME AELMDADSDF ENSP00000249373/1-787 CPEPSPPQDP FLPSAPAPVA WAHGRRQGLG PIHSRTNLMD TELMDADSDF ENSBTAP00000017670/1-780 CPE------- --PSAPAPVA WAQGRRQGLG PIHSRTNLME AELMDADSDF bmy_08079T0/1-782 CPE------- --PSAPAPLA WAQGRRQGLG PIHSRTNLME AELMDADSDF ENSTTRP00000008000/1-782 CPE------- --PSAAAPMA WAQGRRQGLG PIHSRTNLME AELMDADSDF