KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:02:27 2014 Check: 00 .. Name: ENSP00000444156/1-501 Len: 812 Check: 1935 Weight: 1.00 Name: ENSBTAP00000017674/1-468 Len: 812 Check: 6781 Weight: 1.00 Name: ENSTTRP00000005794/1-491 Len: 812 Check: 3567 Weight: 1.00 Name: bmy_02648T0/1-470 Len: 812 Check: 6691 Weight: 1.00 Name: BACU016638/1-781 Len: 812 Check: 562 Weight: 1.00 // 1 50 ENSP00000444156/1-501 MSERCCSRYS SGASIGCTPT STQAKMVSKR IAQETFDAAV RENIEEFAMG ENSBTAP00000017674/1-468 ---------- ---------- -----MASKR ITQETFDAAV RENIQEFEMG ENSTTRP00000005794/1-491 ---------- LGATTGCPPH TEEMKMASKH ITQETFDAAV RENIEEFELG bmy_02648T0/1-470 ---------- ---------- ---MKMASKR ITQETFDAAV RENIEEFEMG BACU016638/1-781 ---------- ---------- ---MKMASKR ITQETFDAAV RENIEEFEMG 51 100 ENSP00000444156/1-501 PEEAVKEAVE QFESQGVDLS NIVKTAPKVS ADGSQEPTHD ILQMLSDLQE ENSBTAP00000017674/1-468 PEEAVREAVE QFESQGVDLS NIVKMTPKVS ADGPQDLIHD ILQALDDLQE ENSTTRP00000005794/1-491 PEEAVKEAVE QFESQGVDLG NIVKTPPKVS ADGPQEPTHD ILQALDDLQE bmy_02648T0/1-470 PEEAVKEAVE QFESQGVDLS NIVRMTPKVS ADGPQEPTHD ILQALDDLQE BACU016638/1-781 PEEAVKEAVE QFESQGVDLS NIVRMMPKVS ADGPQEPTHD ILQALDDLQE 101 150 ENSP00000444156/1-501 SVASSRPQEV SAYLTRFCDQ CKQDKACRFL AAQKGAYPII FTAWKLATAG ENSBTAP00000017674/1-468 SLARSCPQEV SAHLTRFCEQ CKEQKACRFL AAEKGAYSVL LETWKLAAAG ENSTTRP00000005794/1-491 SMARSHPQEV SAHLARFCEQ CKQQKACRFL AAEKGAYPIL LATWKLAAAG bmy_02648T0/1-470 SVARSHPQEV SAHLARFCEQ CKQQKACRFL AAEKGAYPIL LATWKLAAAG BACU016638/1-781 SMARSHPQEV SAHLARFCEQ CKQQKACRFL AAEKGAYPIL LATWKLAAAG 151 200 ENSP00000444156/1-501 DQGLLLQSLN ALSVLTDGQP DLLDAQGLQL LVATLTQNAD EADLTCSGIR ENSBTAP00000017674/1-468 DQGLLLQALN ALSALTDGQP DLLDTQGLQL LVATLAHNAD SAHVTCSGIR ENSTTRP00000005794/1-491 DQGLLLQALN ALSALTDGQP DLLDTQGLQL LVATLARNAD SANVTCSGIR bmy_02648T0/1-470 DQSLLLQALN ALSALTDGQP DLLDTQGLQL LVATLAQNAD SANVTCSGIR BACU016638/1-781 DQGLLLQALN ALSALTDGQP DLLDTQGLQL LVATLAQNAD SANVTCSGIR 201 250 ENSP00000444156/1-501 CVRHACLKHE QNRQDLVKAG VLPLLTGAIT HHGHHTDVVR EACWALRVMT ENSBTAP00000017674/1-468 CVRLACLKHE QNRQSLVKAG VLPLLTGAIA RHSRCADVVR EACWALRVMT ENSTTRP00000005794/1-491 CVRHACLKHE QNRQSLVKAG VLPLLTGAIA RHSRCADVVR EACWALRIMT bmy_02648T0/1-470 CVRHACLKHE QNRQSLVKAG VLPLLTGAIA RHSCCADVVR EACWALRIMT BACU016638/1-781 CVRHACLKHE QNRQSLVKAG VLPLLTGAIA RHSCCADVVR EACWALRIMT 251 300 ENSP00000444156/1-501 FDDDIRVPFG HAHNHAKMIV QENKGLKVLI EATKAFLDNP GILSELCGTL ENSBTAP00000017674/1-468 FDDDIRVPFG HAHDHAKMIV QENGGLKVLI EAAKVFPDNP SILSELCSTL ENSTTRP00000005794/1-491 FDDDIRVPFG RAHDHAKMIV QENGGLKVLI EAAKAFPDNP SILSDLCSTL bmy_02648T0/1-470 FDDDIRVPFG RAHDHAKMIV QENGGLKVLI EAAKAFPDNP SILSDICSTL BACU016638/1-781 FDDDIRVPFG RAHDHAKMIV QENGGLKVLI EAAKAFPDNP SILSDLCSTL 301 350 ENSP00000444156/1-501 SRLAIRNEFC QEVVDLGGLS ILVSLLADCN DHQMRDQSGV QELVKQVLST ENSBTAP00000017674/1-468 SRLAVRNEFC QEVVDLGGLS VLVALLADCN DHQ------- -ELVKQVLSA ENSTTRP00000005794/1-491 SRLAVRNEFC QEVVDLGGLN VLVALLANCN DHQVGVQSCL RDLVKQVLSA bmy_02648T0/1-470 SRLAVRNEFC QEVVDLGGLS VLVALLANCS DHQ------- -DLVKQVLSA BACU016638/1-781 SRLAVRNEFC QEVVDLGGLS VLVALLGDCS DHQ------- -DLVKQVLSA 351 400 ENSP00000444156/1-501 LRAIAGNDDV KDAIVRAGGT ESIVAAMTQH LTSPQVCEQS CAALCFLALR ENSBTAP00000017674/1-468 LRAIAGNDDV KDAIVRAGGT ESIVAAMTRH LASPQVCEQS CAALCVLALR ENSTTRP00000005794/1-491 LRAIAGNDDV KDAIVRAGGT ETIVSAMTRH LASPQVCEQS CAALCVLALR bmy_02648T0/1-470 LRAIAGNDDV KDAIVREGGT ESIVSAMTRH LASPQVCEQS CAALCVLALR BACU016638/1-781 LRAIAGNDDV KDAIVRAGGT ESIVFAMTRH LASPQVCEQS CAALCVLALR 401 450 ENSP00000444156/1-501 KPDNSRIIVE GGGAVAALQA MKAHPQKAGV QKQACMLIRN LVAHGQAFSK ENSBTAP00000017674/1-468 KPANSRVIME GGGAQAALQA MKAHPQEAGV QKQACMLIRN LVARSQAFSQ ENSTTRP00000005794/1-491 KPENSRVIVE GGGALAALQA MKAHPQEVGV QKQACMLIRN LVARSQTFSQ bmy_02648T0/1-470 KPENSQIIVE GGGALAALQA MKAHPQEAGV QKQACMLIRN LVARSQTFSQ BACU016638/1-781 KPENSRIIVE GGGALAALQA MKAHPQEAGV QKQACMLIRN LVARSQTFSQ 451 500 ENSP00000444156/1-501 PILDLGAEAL IMQARSAHRD CEDVAKAALR DLGCHVELRE LWTGQRGNLA ENSBTAP00000017674/1-468 PILDLGAEAL ISRARAAHRD CEDVAKAALR DLGCHVELRE LWTGQKGDLA ENSTTRP00000005794/1-491 PILDLGAEAL ISRARATHRD CEDVAKAALR DLGCHVELQE LWTGQKGNLA bmy_02648T0/1-470 PILDLGAEAL ISRARATHHD CEDVAKAALR DLGCHVELQE LWTGQKGNLA BACU016638/1-781 PILDLGAEAL ISRARATHHD CEDVAKAALR DLGCHVELQE LWTGQKGNLA 501 550 ENSP00000444156/1-501 P--------- ---------- ---------- ---------- ---------- ENSBTAP00000017674/1-468 P--------- ---------- ---------- ---------- ---------- ENSTTRP00000005794/1-491 P--------- ---------- ---------- ---------- ---------- bmy_02648T0/1-470 P--------- ---------- ---------- ---------- ---------- BACU016638/1-781 PTESPAVLSR PGMGNGVKEG VSDHRQVLSS LLSGALAGAL AKTAVAPLDR 551 600 ENSP00000444156/1-501 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000017674/1-468 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000005794/1-491 ---------- ---------- ---------- ---------- ---------- bmy_02648T0/1-470 ---------- ---------- ---------- ---------- ---------- BACU016638/1-781 TKIIFQVSSK RFSAKEAFRV LYFTYLNEGF LSLWRGNSAT MVRVVPYAAI 601 650 ENSP00000444156/1-501 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000017674/1-468 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000005794/1-491 ---------- ---------- ---------- ---------- ---------- bmy_02648T0/1-470 ---------- ---------- ---------- ---------- ---------- BACU016638/1-781 QFSAHEEYKR LLGSYYGFRG EALPPWPRLL AGALAGTTAA SLTYPLDLVR 651 700 ENSP00000444156/1-501 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000017674/1-468 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000005794/1-491 ---------- ---------- ---------- ---------- ---------- bmy_02648T0/1-470 ---------- ---------- ---------- ---------- ---------- BACU016638/1-781 ARMAVTPKEM YSNIFHVFIR ISREEGLKTL YHGFIPTVLG VIPYAGLSFF 701 750 ENSP00000444156/1-501 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000017674/1-468 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000005794/1-491 ---------- ---------- ---------- ---------- ---------- bmy_02648T0/1-470 ---------- ---------- ---------- ---------- ---------- BACU016638/1-781 TYETLKSLHR EYSGRPQPYP FERMIFGACA GLIGQSASYP LDVVRRRMQT 751 800 ENSP00000444156/1-501 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000017674/1-468 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000005794/1-491 ---------- ---------- ---------- ---------- ---------- bmy_02648T0/1-470 ---------- ---------- ---------- ---------- ---------- BACU016638/1-781 AGVTGHQRTS IVRTMQTIMR EEGVVHGLYK GLSMNWLKGP IAVGISFTTF 801 850 ENSP00000444156/1-501 ---------- -- ENSBTAP00000017674/1-468 ---------- -- ENSTTRP00000005794/1-491 ---------- -- bmy_02648T0/1-470 ---------- -- BACU016638/1-781 DLMQILLRHL QS