KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 17:02:28 2014 Check: 00 .. Name: ENSBTAP00000017678/1-770 Len: 850 Check: 2327 Weight: 1.00 Name: ENSTTRP00000000263/1-805 Len: 850 Check: 3156 Weight: 1.00 Name: bmy_19947T0/1-810 Len: 850 Check: 3150 Weight: 1.00 Name: BACU009327/1-622 Len: 850 Check: 1293 Weight: 1.00 // 1 50 ENSBTAP00000017678/1-770 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000000263/1-805 ---------- ---------- -----LAQPL AQRHDPRDPV RGAEFDRIYN bmy_19947T0/1-810 MRGCTLLCAL LCALPWLLPP AAPGLPAQPL ARRRDPRDPA RGAEFDRIYN BACU009327/1-622 ---------- ---------- ---------- ---------- ---------- 51 100 ENSBTAP00000017678/1-770 ---------- ---------- ----VRVYVN SSSENLDYPV LVVVRQQKEV ENSTTRP00000000263/1-805 RVMSLSTENI YSFNYTSQPG QVNAVRVYVN SSSENLDYPV LVVVRQQKEV bmy_19947T0/1-810 GVVSLSTENI YSFNYTSQPG QVNAVRVYVN SSSENLDYPV LVVVRQQKEV BACU009327/1-622 ---------- ---------- ---------- ---------- ---------- 101 150 ENSBTAP00000017678/1-770 LSWQVPLLFQ GLYQRSYNYQ EVSRTLCPSE ATNETGPLEQ LIFVDVASMA ENSTTRP00000000263/1-805 LSWQVPLLFQ GLYQRSYNYQ EVSRTLCPSE ATNETGPLEQ LIFVDVASMA bmy_19947T0/1-810 LSWQVPLLFQ GLYQRSYNYQ EVSRTLCPSE ATNETGPLEQ LIFVDVASMA BACU009327/1-622 ---------- ---------- ---------- ---------- ---------- 151 200 ENSBTAP00000017678/1-770 PLGAQYKLLV TKLKHFQLQT NVAFHFTASP SQPQYFLYKF PEDVDSVIIK ENSTTRP00000000263/1-805 PLGAQYRLLV TKIKHFQLQT NVAFHFTASP SQPQYFLYKF PEDVDSVIIK bmy_19947T0/1-810 PLGAQYRLLV TKIKHFQLQT NVAFHFTASP SQPQYFLYKF PEDVDSVIIK BACU009327/1-622 ---------- ---------- ---------- ---------- ---------- 201 250 ENSBTAP00000017678/1-770 VVSTLAYPCS VVSVQNIMCP VYDLDHNVEF NGVYQSMTKK AAITLQKKDF ENSTTRP00000000263/1-805 VVSEMAYPCS VVSVQNIMCP VYDLDHNVEF NGVYQSMTKK AAITLQKKDF bmy_19947T0/1-810 VVSEMAYPCS VVSVQNIMCP VYDLDHNVEF NGVYQSMTKK AAITLQKKDF BACU009327/1-622 ----MAYPCS VVSVQNIMCP VYDLDHNVEF NGVYQSMTKK AAITLQKKDF 251 300 ENSBTAP00000017678/1-770 PGEQFFVVFV IKPEDYACGG SFFIQAEKEN QTWNLQRAKN LQVTIVPSSK ENSTTRP00000000263/1-805 PGEQFYVVFV IKPEDYACGG SFFIQ-EKEN QTWNLQRAKN LKVTIVPSIK bmy_19947T0/1-810 PGEQFYVVFV IKPEDYACGG SFFIQ-EKEN QTWNLQRAKN LKVTIVPSIK BACU009327/1-622 PGEQFYVVFV IKPEDYACGG SFFIQ-EKEN QTWNLQRAKN LKVTIVPSIK 301 350 ENSBTAP00000017678/1-770 GSVYVKAILL SFLIFFSFYL GCLFVAFIHY IRRKKGTLLF FIDLSCSFSG ENSTTRP00000000263/1-805 GSVYVKSILL SFLIFFSFYL GCLFVAFVHY IRFQRKS--- -IDGSFGSSD bmy_19947T0/1-810 GSVYVKSILL SFLIFFSFYL GCLFVAFVHY IRYQRKS--- -IDGSFGSND BACU009327/1-622 GSVYVKSILL SFLIFFSFYL GCLLVAFVHY IRYQRKS--- -IDGSFGSND 351 400 ENSBTAP00000017678/1-770 GSKALCPNYS QSCPWPRFNY FSPWSINVKN TDDIFKEEIR GDLSHSDSRT ENSTTRP00000000263/1-805 GSGNTSVSHP IAASTPDESN YGAIDESSSS PGR------- -QMSSSDGR- bmy_19947T0/1-810 GSGNTSVSHP IAASTPEESN YGAIDESSSS PGR------- -QMSSSDGR- BACU009327/1-622 GSGNTSVSHP IAASTPEESN YGAIDESSSS PGR------- -QMSSSNGR- 401 450 ENSBTAP00000017678/1-770 HTPYDSAVLL DTDSSVEESD FDTMPDIESD KNIIRTKMFL YLSDLSRKDR ENSTTRP00000000263/1-805 -QTCQS---- DTDSSVEESD FDTMPDIESD KNVIRTKMFL YLSDLSRKDR bmy_19947T0/1-810 -QPCQS---- DTDSSVEESD FDTMPDIESD KNVIRTKMFL YLSDLSRKDR BACU009327/1-622 -QPCQS---- DTDSSVEESD FDTMPDIESD KNVIRTKMFL YLSDLSRKDR 451 500 ENSBTAP00000017678/1-770 RIVSKKYKIY FWNIITIAVF YALPVIQLVI TYQTVVNVTG NQDICFYNFL ENSTTRP00000000263/1-805 RIVSKKYKIY FWNIITIAVF YALPVIQLVI TYQTIVNVTG NQDICYYNFL bmy_19947T0/1-810 RIVSKKYNIY FWNIITIAVF YALPVIQLVI TYQTIVNVTG NQDICYYNFL BACU009327/1-622 RIVSKKYNIY FWNIVTIAVF YALPVIQLVI TYQTIVNVTG NQDICYYNFL 501 550 ENSBTAP00000017678/1-770 CAHPLGVLSA FNNILSNLGH VLLGCLFLLI VLHRDILHRR ALEAKDIFAM ENSTTRP00000000263/1-805 CAHPWGVLSA FNNILSNLGH MLLGCLFLLI VLRRDILHRR ALEAKDIFAM bmy_19947T0/1-810 CAHPWGVLSA FNNILSNLGH MLLGCLFLLI VLRRDILHRR ALEAKDIFAM BACU009327/1-622 CAHPWGVLSA FNNILSNLGH MLLVCLLLLI VLRRDILHRR ALEAKDIFAM 551 600 ENSBTAP00000017678/1-770 EYGIPKHFGL FYAMGIALMM EGVLSACYHV CPNYSNFQFD TSFMYMIAGL ENSTTRP00000000263/1-805 EYGIPKHFGL FYAMGIALMT EGVLSACYHV CPNYSNFQFD TSFMYIIAGL bmy_19947T0/1-810 EYGIPKHFGL FYAMGIALMT EGVLSACYHV CPNYSNFQFD TSFMYIIAGL BACU009327/1-622 EYGIPKHFGL FYAMGIALMT EGVLSACYHV CPNYSNFQFD TSFMYIIAGL 601 650 ENSBTAP00000017678/1-770 CMLKLYQTRH PDINASAYAA YASFALVITL TVLGVVFGKN DMW-FWVIFS ENSTTRP00000000263/1-805 CMLKLYQTRH PDINASAYAA YISFALVITL TVLGVVFGKN DLWLFWVIFS bmy_19947T0/1-810 CMLKLYQTRH PDINASAYAA YISFALVITL T----VFGKN DLWLFWVIFS BACU009327/1-622 CMLKLYQTRH PDINASAYAA YISFALVITL TVLGVVFGKN DLWLFWVIFS 651 700 ENSBTAP00000017678/1-770 AIHILASLAL STQIYYMGRF KI-----ADW GIFRRAAVVF YTDCIQQRSR ENSTTRP00000000263/1-805 AIHILASLAL STQIYYMGRF KI-ATITTDL GIFRRAAMVF YTDCIRQCSR bmy_19947T0/1-810 AIHILASLAL STQIYYMGRF KIDVSDTADL GIFRRAAMVF YTDCIQQCSR BACU009327/1-622 AIHILASLAL STQIYYMGRF KI-----ADL GIFRRAAMVF YTDCIQQCSR 701 750 ENSBTAP00000017678/1-770 PLYMDRMVLL IVGNLVNWSF ALFGLIYRPR DFASYMLGIF ICNLLLYLAF ENSTTRP00000000263/1-805 PLYMDRMVLL IVGNLVNWSF ALFGLIYRPR DFASYMLGIF ICNLLLYLTF bmy_19947T0/1-810 PLYMDRMVLL IVGNLVNWSF ALFGLIYRPR DFASYMLGIF ICNLLLYLAF BACU009327/1-622 PLYMDRMVLL IMGNLVNWSF ALFGLIYRPR DFASYMLGIF ICNLLLYLAF 751 800 ENSBTAP00000017678/1-770 YIIMKLRSSE KILLIPLFCI VATAVVWAAA LYFFFQNLSS WEGTPAESRE ENSTTRP00000000263/1-805 YVIMKLRSSE KILLIPLFCI VATAAVWAAA LYFFFQNLSS WEGTPAESRE bmy_19947T0/1-810 YIIMKLRSSE KILLIPLFCI VATAVVWAAA LYFFFQNLSS WEGTPAESRE BACU009327/1-622 YIIMKLRSSE KILLIPLFCI VATAVVWAAA LYFFFQNLSS WEGTPAESRE 801 850 ENSBTAP00000017678/1-770 KNRECILLDF FDDHDIWHFL SATALFFSFL VLLTLDDDLD LVRRDQIPVF ENSTTRP00000000263/1-805 KNRECILLDF FDDHDIWHFL SATALFFSFL VLLTLDDDLD VVRRDQIPVF bmy_19947T0/1-810 KNRECILLDF FDDHDIWHFL SATALFFSFL VSL------- ---------- BACU009327/1-622 KNRECILLDF FDDHDIWHFL SATALFFSFL VLLTLDDDLD VVRRDQIPVF