KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:02:29 2014 Check: 00 .. Name: bmy_19324T0/1-433 Len: 749 Check: 5814 Weight: 1.00 Name: ENSP00000356436/1-749 Len: 749 Check: 5444 Weight: 1.00 Name: BACU006049/1-728 Len: 749 Check: 3114 Weight: 1.00 Name: ENSTTRP00000015734/1-748 Len: 749 Check: 3246 Weight: 1.00 Name: ENSBTAP00000017685/1-749 Len: 749 Check: 5453 Weight: 1.00 // 1 50 bmy_19324T0/1-433 ---------- ---------- ---------- ---------- ---------- ENSP00000356436/1-749 MSFIDPYQHI IVEHQYSHKF TVVVLRATKV TKGAFGDMLD TPDPYVELFI BACU006049/1-728 ---------- -VEHHYSHKF TVVVLGATKV TKGAFGDMLD TPDPYVELFI ENSTTRP00000015734/1-748 MSFIDPYQHI IVEHHYSHKF TVVVLRATKV TKGAFGDMLD TPDPYVELFI ENSBTAP00000017685/1-749 MSFIDPYQHI IVEHHYSHKF TVVVLRATKV TKGTFGDMLD TPDPYVELFI 51 100 bmy_19324T0/1-433 ---------- ---------- ---------- ---------- ---------- ENSP00000356436/1-749 STTPDSRKRT RHFNNDINPV WNETFEFILD PNQENVLEIT LMDANYVMDE BACU006049/1-728 SSTPDSRKRT KHFNNDINPV WNETFEFILD PNQDNVLEIT LMDANYVMDE ENSTTRP00000015734/1-748 SSTPDSRKRT KHFNNDINPV WNETFEFILD PNQDNVLEIT LMDANYVMDE ENSBTAP00000017685/1-749 SSTPDSRKRT RHFNNDINPV WNETFEFILD PNQENILEIT LMDANYVMDE 101 150 bmy_19324T0/1-433 ---------- ---MGKRKEY ELYVSDTSAH ILVISNLVVS KLDI------ ENSP00000356436/1-749 TLGTATFTVS SMKVGEKKEV PFIFNQVTEM VLEMSLEVCS CPDLRFSMAL BACU006049/1-728 TLGTAIFPIS SMKVGEKKEV PFTFNEVTEM ILEMSLEVCS SPDLRFSMAL ENSTTRP00000015734/1-748 TLGTAIFPIS SMKVGEKKEV PFIFNQVTEM ILEMSLEVCS SPDLRFSMAL ENSBTAP00000017685/1-749 TLGTTTFPIS SMKVGEKKQV PFIFNQVTEM ILEMSLEVCS SPDLRFSMAL 151 200 bmy_19324T0/1-433 ---------- ---------- ---------- ----IKVPVV AILGSGGGFR ENSP00000356436/1-749 CDQEKTFRQQ RKEHIRESMK KLLGPKNSEG LHSARDVPVV AILGSGGGFR BACU006049/1-728 CDQEKVFRQQ RKENIKENMK KLLGPKNSEG LYSTRDVPVV AILGSGGGFR ENSTTRP00000015734/1-748 CDQEKAFRQQ RKENIKENMK KLLGPKNNEG LYSTRDVPVV AILGSGGGFR ENSBTAP00000017685/1-749 CDQEKAFRQQ RKENIKENMK KLLGPKNSEG LHSTRDVPVV AILGSGGGFR 201 250 bmy_19324T0/1-433 AMVGFSGVMK AL-------- ---------- --YMSTLYSH PDFPEKGPEE ENSP00000356436/1-749 AMVGFSGVMK ALYESGILDC ATYVAGLSGS TWYMSTLYSH PDFPEKGPEE BACU006049/1-728 AMVGFSGVMK ALYESGILDC ATYIAGLSGS TWYMSTLYSH PDFPEKGPEE ENSTTRP00000015734/1-748 AMVGFSGVMK ALYESGILDC ATYIAGLSGS TWYMSTLYSH PDFPEKGPEE ENSBTAP00000017685/1-749 AMVGFSGVMK ALYESGILDC ATYIAGLSGS TWYMSTLYSH PDFPEKGPEE 251 300 bmy_19324T0/1-433 INEELMKSVS HNPLLLLTPQ KIKRYVESLW KKKSSGQPVT FTDIFGMLIG ENSP00000356436/1-749 INEELMKNVS HNPLLLLTPQ KVKRYVESLW KKKSSGQPVT FTDIFGMLIG BACU006049/1-728 INEELMKSVS HNPLLLLTPQ KIKRYIESLW KKKSSGQPVT FTDIFGMLIG ENSTTRP00000015734/1-748 INEELMKSVS HNPLLLLTPQ KIKRYIESLW KKKSSGQPVT FTDIFGMLIG ENSBTAP00000017685/1-749 INKELMKNVS HNPLLLLTPQ KIKRYVESLW RKKSSGQPVT FTDIFGMLIG 301 350 bmy_19324T0/1-433 ETLIHNRMNT TLSSLKEKVN TGQCPLPLFT CLHVKPDVSE LMFADWVEFS ENSP00000356436/1-749 ETLIHNRMNT TLSSLKEKVN TAQCPLPLFT CLHVKPDVSE LMFADWVEFS BACU006049/1-728 ETLIHN--GE TDKEREEKMD VK-------- SLKVASEMCD GWIRYWVEFS ENSTTRP00000015734/1-748 ETLIHNRMNT TLSSLKEKVN TGQCPLPLFT CLHVKPDVSE LM-ADWVEFS ENSBTAP00000017685/1-749 ETLIHNRMNT TLSSLKEKVN TGQCPLPLFT CLHVKPDVSE LMFADWVEFS 351 400 bmy_19324T0/1-433 PYEIGMAKYG TFMAPDLFGS KFFMGTVVKK YEENPLHFLM GVWGSAFSIL ENSP00000356436/1-749 PYEIGMAKYG TFMAPDLFGS KFFMGTVVKK YEENPLHFLM GVWGSAFSIL BACU006049/1-728 PYEIGMAKYG TFMAPDLFGS KFFMGTVVKK YEENPLHFLM GVWGSAFSIL ENSTTRP00000015734/1-748 PYEIGMAKYG TFMAPDLFGS KFFMGTVVKK YEENPLHFLM GVWGSAFSIL ENSBTAP00000017685/1-749 PFEIGMAKYG TFMAPDLFGS KFFMGTVVKK YEENPLHFLM GVWGSAFSIL 401 450 bmy_19324T0/1-433 FNRVLGVSGS QSKGSTMEEE LENITAKHIV SNDSSDSDDE SQEPKGTENE ENSP00000356436/1-749 FNRVLGVSGS QSRGSTMEEE LENITTKHIV SNDSSDSDDE SHEPKGTENE BACU006049/1-728 FNRVLGVSGS QSKGSTMEEE LENITAKHIV SNDSSDSDDE SQEPKGTENE ENSTTRP00000015734/1-748 FNRVLGVSGS QSKGSTMEEE LENITAKHIV SNDSSDSDDE SQEPKGTENE ENSBTAP00000017685/1-749 FNRVLGVSGS QSKGSTMEEE LENITAKHIV SNDSSDSDDE SQGPKGTEHE 451 500 bmy_19324T0/1-433 EAEREYQNDN QASWVQRMIM ALVSDSALFN TREGRAGKVH NFMLGLNLNT ENSP00000356436/1-749 DAGSDYQSDN QASWIHRMIM ALVSDSALFN TREGRAGKVH NFMLGLNLNT BACU006049/1-728 EAEREYQNDN QASWVQRMIM ALVSDSALFN TREGRAGKVH NFMLGLNLNT ENSTTRP00000015734/1-748 EAEREYQNDN QASWVQRMIM ALVSDSALFN TREGRAGKVH NFMLGLNLNT ENSBTAP00000017685/1-749 EAEREYQNDN QASWVQRMLM ALVSDSALFN TREGRAGKVH NFMLGLNLNT 501 550 bmy_19324T0/1-433 SYPMSPLRDF TTQESLEEDE LDAAVADPDE FEQIYEPLDV KSKKIHVVDS ENSP00000356436/1-749 SYPLSPLSDF ATQDSFDDDE LDAAVADPDE FERIYEPLDV KSKKIHVVDS BACU006049/1-728 SYPMSPLRNF TTQESLEEDE LDAAVADPDE FEQIYEPLDV KRKKIHVVDS ENSTTRP00000015734/1-748 SYPMSPLRDF TTQESLEEDE LDAAVADPDE FERIYEPLDV KSKKIHVVDS ENSBTAP00000017685/1-749 SYPMSPLRDF TMQESLDEDE LDAAVADPDE FEQIYEPLDV KSKKIHVVDS 551 600 bmy_19324T0/1-433 GLTFNLPYPL ILRPQRGIVF PI-------- ---------- ---------- ENSP00000356436/1-749 GLTFNLPYPL ILRPQRGVDL IISFDFSARP SDSSPPFKEL LLAEKWAKMN BACU006049/1-728 GLTFNLPYPL ILRPQRGVDL IISFDFSARP SDSSPPFKEL LLAEKWAKMN ENSTTRP00000015734/1-748 GLTFNLPYPL ILRPQRGVDL IISFDFSARP SDSSPPFKEL LLAEKWAKMN ENSBTAP00000017685/1-749 GLTFNLPYPL ILRPQRGVDL IISFDFSARP SDSSPPFKEL LLAEKWAKMN 601 650 bmy_19324T0/1-433 ---------- ------LQDV LVLKNENK-- ---------- -----YLTKY ENSP00000356436/1-749 KLPFPKIDPY VFDREGLKEC YVFKPKNPDM EKDCPTIIHF VLANINFRKY BACU006049/1-728 KLPFPKIDPY VFDREGLKEC YVFKPRNPDV EKDCPTIIHF VLANINFRKY ENSTTRP00000015734/1-748 KLPFPKIDPY VFDREGLKEC YVFKPKNPDV EKDCPTIIHF VLANINFRKY ENSBTAP00000017685/1-749 KLPFPKIDPY VFDREGLKEC YVFKPKNPDV EKDCPTIIHF VLANINFRKY 651 700 bmy_19324T0/1-433 HLEG------ ------HYQV FISTENHFS- ---------- ---------- ENSP00000356436/1-749 RAPGVPRETE EEKEIADFDI FDDPESPFST FNFQYPNQAF KRLHDLMHFN BACU006049/1-728 KAPGVPRETQ EEKEIADFDI FDDPESPFST FNFQYPNQAF KRLHDLMYFN ENSTTRP00000015734/1-748 KAPGVPRETK EEKELADFDI FDDPESPFST FNFQYPNQAF KRLHDLMYFN ENSBTAP00000017685/1-749 KAPGVPRETN EEKEIADFDI FDDPESPFST FNFQYPNQAF KRLHDLMYFN 701 750 bmy_19324T0/1-433 ---------- ---------- ---------- ---------- --------- ENSP00000356436/1-749 TLNNIDVIKE AMVESIEYRR QNPSRCSVSL SNVEARRFFN KEFLSKPKA BACU006049/1-728 TLNNINVIKN AIVESIEYRR QNPSRCSVSL SSVEARRFFN KEFLSKPTA ENSTTRP00000015734/1-748 TLNNIDVIKN AIVESIEYRR QNPSRCSVSL SSVEARRFFN KEFLSKPTA ENSBTAP00000017685/1-749 TLNNIDVIKN AIVESIEYRR QNPSRCSVSL SSVEARRFFN KEFLSKPTA