KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:02:31 2014 Check: 00 .. Name: bmy_10552T0/1-828 Len: 1103 Check: 9610 Weight: 1.00 Name: BACU014937/1-511 Len: 1103 Check: 1311 Weight: 1.00 Name: ENSTTRP00000003705/1-1096 Len: 1103 Check: 3884 Weight: 1.00 Name: ENSP00000264160/1-1099 Len: 1103 Check: 5719 Weight: 1.00 Name: ENSBTAP00000017695/1-1098 Len: 1103 Check: 721 Weight: 1.00 // 1 50 bmy_10552T0/1-828 MKYSAEKAQK RGGCTLTQWA FETFSL---- ---------- ---------- BACU014937/1-511 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000003705/1-1096 MRMSDTVTVK NETETMKDLE AEVKDTTGVE NLIKSENYGK ILAEKNERCI ENSP00000264160/1-1099 MRMSDTVTVK DETATMKDLE AEVKDTTRVE NLIKSENYGK ILVEKNEHCI ENSBTAP00000017695/1-1098 MRMSDTVTIK NDTETMKDLE AEVKDTTGVE NLTKSENYGK ILAEKNERCI 51 100 bmy_10552T0/1-828 -------RPL QSFGQTGKRS KSSSKLKLVR SLAVCEESPP PPTAEISQEN BACU014937/1-511 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000003705/1-1096 DNNIDLQRPL QSFGQTGKRS KXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000264160/1-1099 ENNIDLQRPL QSFGQTGKRS KSSSKLKLVR SLAVCEESPP PPAPEISQEN ENSBTAP00000017695/1-1098 DNNIDLQRPL QSFGQTGKRS KSSSKLKLVR SLAVCEESPP PPTAEISQEN 101 150 bmy_10552T0/1-828 QEKIQIQLTQ SFEKEEKPSK DEAEKEKASD KLPRKMLSRD SSQEYTDSTG BACU014937/1-511 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000003705/1-1096 XEKIQIQLTQ SFEKEEKPSK DEAEKEKASD KLPRKMLSRD SSQEYTDSTG ENSP00000264160/1-1099 QEKIQIQLTQ SFEKEEKPSK DEAEKEKASD KLPRKMLSRD SSQEYTDSTG ENSBTAP00000017695/1-1098 QEKIQIQLTQ SFEKEEKPPK DEAEKEKASD KLPRKMLSRD SSQEYTDSTG 151 200 bmy_10552T0/1-828 IDLHEFLVNT LKNNPRDRMM LLKLEQEILD FIGNNESPRK KFPPMTSYHR BACU014937/1-511 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000003705/1-1096 IDLHEFLVNT LKNNPRDRMM LLKLEQEILD FIGNNESPRK KFPPMTSYHR ENSP00000264160/1-1099 IDLHEFLVNT LKNNPRDRMM LLKLEQEILD FIGNNESPRK KFPPMTSYHR ENSBTAP00000017695/1-1098 IDLHEFLVNT LKNNPRDRMM LLKLEQEILD FIGNNESPRK KFPPMTSYHR 201 250 bmy_10552T0/1-828 MLLHRVAAYF GLDHNVDQSG KSVIVNKTSN TRIPDQKFNE HIKDDKGEDF BACU014937/1-511 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000003705/1-1096 MLLHRVAAYF GLDHNVDQSG KSVIVNKTSN TRIPDQKFNE HIKDDKGEDF ENSP00000264160/1-1099 MLLHRVAAYF GLDHNVDQSG KSVIVNKTSN TRIPDQKFNE HIKDDKGEDF ENSBTAP00000017695/1-1098 MLLHRVAAYF GLDHNVDQSG KAVIVNKTSN TRIPDQKFTE HIKDDKGEDF 251 300 bmy_10552T0/1-828 QKRYILKRDN SSFDKDDNQM RIRLKDDRRS KSIEEREEEY QRARDRIFSQ BACU014937/1-511 ---------- ---------M RIRLKDDRRS KSIEEREEEY QRARDRIFSQ ENSTTRP00000003705/1-1096 QKRYILKRDN SSFDKDDNQM RIRLKDDRRS KSIEEREEEY QRARDRIFSQ ENSP00000264160/1-1099 QKRYILKRDN SSFDKDDNQM RIRLKDDRRS KSIEEREEEY QRARDRIFSQ ENSBTAP00000017695/1-1098 QKRYILKRDN SSFDKDDNQM RIRLKDDRRS KSIEEREEEY QRARDRIFSQ 301 350 bmy_10552T0/1-828 DSLCSQENYI IDKRIQDEDA SSTQQRRQIF RVNKDSSGRS TNSHQSSTEN BACU014937/1-511 DSLCSQENYI IDKRIQDEDA SSTQQRRQIF RVNKDSSGRS TNSHQSSTEN ENSTTRP00000003705/1-1096 DSLCSQENYI IDKRIQDEDA SSTQQRRQIF RVNKDSSGRS TNSHQSSTEN ENSP00000264160/1-1099 DSLCSQENYI IDKRLQDEDA SSTQQRRQIF RVNKDASGRS TNSHQSSTEN ENSBTAP00000017695/1-1098 DSLCSQENYI IDKRIQDEDA NSTQQRRQIF RVNKDASGRS TNSHQSSTEN 351 400 bmy_10552T0/1-828 ELKYSEPRPW SSTDSDSSLR NFKPAVTKAS SFSGISVLTR GDSSGSSKSI BACU014937/1-511 ELKYSEPRPW SSTDSDSSLR NFKPAVTKAS SFSGISVLTR GDSSGSSKSI ENSTTRP00000003705/1-1096 ELKYSEPRPW SSTDSDSSLR NFKPAVTKAS SFSGISVLTR GDSSGSSKSI ENSP00000264160/1-1099 ELKYSEPRPW SSTDSDSSLR NLKPAVTKAS SFSGISVLTR GDSSGSSKSI ENSBTAP00000017695/1-1098 DLKYSEPRPW SSTDSDSSLR NFKPAVTKAS SFSGISVLTR GDSSGSSKSI 401 450 bmy_10552T0/1-828 GRLSKTGSES SGSVGSSTGS LSHIQQPLPG TALSQSSHGA PVVYPTVSTH BACU014937/1-511 GRLSKTGSES SGSVGSSTGS LSHIQQPLPG TALSQSSHGA PVVYPTVSTH ENSTTRP00000003705/1-1096 GRLSKTGSES SGSVGSSTGS LSHIQQPLPG TALSQSSHGA PVVYPTVSTH ENSP00000264160/1-1099 GRLSKTGSES SGSVGSSTGS LSHIQQPLPG TALSQSSHGA PVVYPTVSTH ENSBTAP00000017695/1-1098 GRLSKTGSES SGSVGSSTGS LSHIQQPLPG TALSQSSHGA PVVYPAVSTH 451 500 bmy_10552T0/1-828 SSLSFDGGLN GQVASPSTSF FLLPLEATGI PPGSILINPQ TGQPFLNPDG BACU014937/1-511 SSLSFDGGLS GQVASPSTSF FLLPLEATGI PPGSILINPQ TGQPFLNPDG ENSTTRP00000003705/1-1096 SSLSFDGGLN GQVASPSTSF FLLPLEATGI PPGSILINPQ TGQPFLNPDG ENSP00000264160/1-1099 SSLSFDGGLN GQVASPSTSF FLLPLEAAGI PPGSILINPQ TGQPFINPDG ENSBTAP00000017695/1-1098 SSLSFDGGLN GQVASPSTSF FLLPLEAAGI PPGSILINPQ TGQPFINPDG 501 550 bmy_10552T0/1-828 SPVVCSPPVT QQPVRAQVPG PPQPPLPALP PQQQAAHHIF SQQDNLGSQF BACU014937/1-511 SPVVCSPPVT QQPVRAQVPG PPQPPLPALP PQQQAAHHIF S-QDNLGSQF ENSTTRP00000003705/1-1096 SPVVCSPPVT QQPVRAQVPG PPQPPLPALP PQQQAAHHIF S-QDNLGSQF ENSP00000264160/1-1099 SPVVYNPPMT QQPVRSQVPG PPQPPLPA-P PQQPAANHIF S-QDNLGSQF ENSBTAP00000017695/1-1098 SPVVYNPPMT QQPVRTQVPG PPQPPLPPPP PQQQAANHIF SQQDNLGSQF 551 600 bmy_10552T0/1-828 SHMSLARQPS ADGSDPHATM FQSTVVLQSP QQSGYIMTAV ----PPPPPP BACU014937/1-511 SHMSLARQPS ADGSDPHATM FQSTVVLQSP QQSGYIMTAA ----PPPPPP ENSTTRP00000003705/1-1096 SHMSLARQPS ADGSDPHATM FQSTVVLQSP QQSGYIMTAA ------PPPP ENSP00000264160/1-1099 SHMSLARQPS ADGSDPHAAM FQSTVVLQSP QQSGYIMTAA PPPHPPPPPP ENSBTAP00000017695/1-1098 SHMSLARQPS ADGSDPHATM FQSTVVLQSP QQSGYIMTAA ----PPPPPP 601 650 bmy_10552T0/1-828 PPPPPPPLPP GQPVATAAYS ASGHPVSQPV LQQQGYIQQP SPQMPACYCA BACU014937/1-511 PPPPPPPLPP GQPVPTAAYS ASGHPVSQPV LQQQGYIQQP SPQMPACYCA ENSTTRP00000003705/1-1096 PPPPPPPLPP GQPVPTAGYS ASGHPVSQPV LQQQGYIQQP SPQMPACYCA ENSP00000264160/1-1099 PPPPPPPLPP GQPVPTAGYP ASGHPVSQPV LQQQGYIQQP SPQMPACYCA ENSBTAP00000017695/1-1098 PPPPPPPLPP GQPVPAPGYS ASGHPVSQPV LQQQGYIQQP SPQMPACYCA 651 700 bmy_10552T0/1-828 PGHYHSSQPQ YRPVPSVHYS SHLNQPLPQP AQQAG-EYVR CSRRIFIGFF BACU014937/1-511 PGHYHSSQPQ YRPVPSVHYS SHLNQPLPQP AQQAGYQVMP NQQQNYQGIV ENSTTRP00000003705/1-1096 PGHYHSSQPQ YRPVPSVHYS SHLNQPLPQP AQQAGYQVMP NQQQNYQGIV ENSP00000264160/1-1099 PGHYHSSQPQ YRPVPSVHYN SHLNQPLPQP AQQTGYQVIP NQQQNYQGIV ENSBTAP00000017695/1-1098 PGHYHSNQPQ YRPVPSVHYN SHLNQPLPQP AQQTGYQVMP NQQQNYQGIV 701 750 bmy_10552T0/1-828 EAFLAACRCW KVGP------ -----VCSCK CLSAKYIPLC QKWTTV---- BACU014937/1-511 GVQQPQSQSL VGGQPNSIGN QIQGVVIPYP SVPSYQVSLP QGSQGI---- ENSTTRP00000003705/1-1096 GVQQPQSQSL VGGQPNSIGN QIQGVVIPYP SVPSYQVSLP QGSQGIAHQT ENSP00000264160/1-1099 GVQQPQSQSL VSGQPNSIGN QIQGVVIPYT SVPTYQVSLP QGSQGIPHQT ENSBTAP00000017695/1-1098 GVQQPQSQSL VGGQPNGIGN QIQGVVIPYP SVPSYQVSLP QGSQGIAHHT 751 800 bmy_10552T0/1-828 ---------- ---------- ---------- ---------- ---------- BACU014937/1-511 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000003705/1-1096 YQQPVMFPNQ SNQGSMPTAG MPVYYSIIPP GQQNNLSSSV GYLQPPGSEQ ENSP00000264160/1-1099 YQQPVMFPNQ SNQGSMPTTG MPVYYSVIPP GQQNNLSSSV GYLQHPGSEQ ENSBTAP00000017695/1-1098 YQQPVMFPNQ SNQGSMPAAG MPVYYSVIPP GQQNNLSSSV GYLQHPGSEQ 801 850 bmy_10552T0/1-828 ---------- ---------- -NATPPNSG- ---------- ---------- BACU014937/1-511 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000003705/1-1096 VQLPRTTSPC NSQQLQGHQC AAVPPPPAGG GMVMMQLSVP NNPQSRAHSP ENSP00000264160/1-1099 VQFPRTTSPC SSQQLQGHQC TAGPPPPPGG GMVMMQLSVP NNPQSCAHSP ENSBTAP00000017695/1-1098 VQFPRTTSPC NSQQLQGHQC -AVAPPPPGG GMVMMQLSVP NNPQSRAHSP 851 900 bmy_10552T0/1-828 PKYLHDRWHV ---------- -----FIISD VSVVGFFLML VMKSKMHWEM BACU014937/1-511 PISLINSLLC ---------- ---------- ------SLIS LIKD------ ENSTTRP00000003705/1-1096 PLWKQNKYYC DHQRGQKCVE FSSIDNIVQX XXXXXXXXXX XXXXXXXXXX ENSP00000264160/1-1099 PQWKQNKYYC DHQRGQKCVE FSSVDNIVQH SPQLSSPIIS PAQSPAPAQL ENSBTAP00000017695/1-1098 PQWKQNKYYC DHQRGQKCVE FSSVDNIVQH SPQLSSPIIS PAQSPAPAQL 901 950 bmy_10552T0/1-828 DTGT------ ----FCSDFL YRFIAISFSK FRSKLTNPIE SNIL------ BACU014937/1-511 ---------- ----LCLQQE RQFITASF-- ---------- ---------- ENSTTRP00000003705/1-1096 XXXXXXXXXX XXXXXXXXXX XXXXPGQGDA RYPLLGQPLQ YNPPAVLHGH ENSP00000264160/1-1099 STLKTVRPSG PPLSIMPQFS RPFVPGQGDS RYPLLGQPLQ YNPPAVLHGH ENSBTAP00000017695/1-1098 STLKTVRPSG PPLAIIPQFS RPFVSAQGDA RYPLLGQTLQ YNPPAVLHGH 951 1000 bmy_10552T0/1-828 ------RSGR RLG------- ---------- ---------- ---------- BACU014937/1-511 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000003705/1-1096 IPAQQGQSGS RHGNRGRKQA KKAASTDLGA GEAVVGKVLE ITELPDGITR ENSP00000264160/1-1099 IPNQQGQPGS RHGNRGRRQA KKAASTDLGA GETVVGKVLE ITELPDGITR ENSBTAP00000017695/1-1098 IPAQQGQSGN RHGNRGRKQA KKAASTDLGA GEAVVGKVLE ITELPDGITR 1001 1050 bmy_10552T0/1-828 ---------- -------KYL KDKMPLV--- -FHASTEVGE QRVIEEKNSK BACU014937/1-511 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000003705/1-1096 MEAEKLFGEL FKIGAKIRWL RDPQSQPQLR RHPLCCGSGD STVNPERSKP ENSP00000264160/1-1099 MEAEKLFGEL FKIGAKIRWL RDPQSQP--R RHPLCCGSGD NTANPERSKP ENSBTAP00000017695/1-1098 MEAEKLFGEL FKIGAKIRWL RDPQSQPQMR RHPLCCGSGD STVNPERSKP 1051 1100 bmy_10552T0/1-828 DVLAAVF--- ---------- ---------- ---------- -FQIHLTDYP BACU014937/1-511 ---------- ---------- ---------- ---------- ----HLANKI ENSTTRP00000003705/1-1096 SDLASTYTVL ATFPSISAAQ NALKKQINSV NKFKLRTSKK HYDFHILERA ENSP00000264160/1-1099 SDLASTYTVL ATFPSISAAQ NALKKQINSV NKFKLRTSKK HYDFHILERA ENSBTAP00000017695/1-1098 SDLASTYTVL ATFPSISAAQ NALKKQINSV NKFKLRTSKK HYDFHILERA 1101 1150 bmy_10552T0/1-828 --- BACU014937/1-511 I-- ENSTTRP00000003705/1-1096 SSQ ENSP00000264160/1-1099 SSQ ENSBTAP00000017695/1-1098 SSQ