KEY:
ENSP* - Homo sapiens (Human)
ENSBTA* - Bos taurus (Cow)
ENSTTR* - Tursiops truncatus (Dolphin)
bmy_* - Balaena mysticetus (Bowhead whale)
BACU* - Balaenoptera acutorostrata (Minke whale)
Copy from below the line for a valid .msf file.
----------------------------------------------------------------------------------
NoName MSF: 5 Type: P Thu May 15 17:02:31 2014 Check: 00 ..
Name: bmy_10552T0/1-828 Len: 1103 Check: 9610 Weight: 1.00
Name: BACU014937/1-511 Len: 1103 Check: 1311 Weight: 1.00
Name: ENSTTRP00000003705/1-1096 Len: 1103 Check: 3884 Weight: 1.00
Name: ENSP00000264160/1-1099 Len: 1103 Check: 5719 Weight: 1.00
Name: ENSBTAP00000017695/1-1098 Len: 1103 Check: 721 Weight: 1.00
//
1 50
bmy_10552T0/1-828 MKYSAEKAQK RGGCTLTQWA FETFSL---- ---------- ----------
BACU014937/1-511 ---------- ---------- ---------- ---------- ----------
ENSTTRP00000003705/1-1096 MRMSDTVTVK NETETMKDLE AEVKDTTGVE NLIKSENYGK ILAEKNERCI
ENSP00000264160/1-1099 MRMSDTVTVK DETATMKDLE AEVKDTTRVE NLIKSENYGK ILVEKNEHCI
ENSBTAP00000017695/1-1098 MRMSDTVTIK NDTETMKDLE AEVKDTTGVE NLTKSENYGK ILAEKNERCI
51 100
bmy_10552T0/1-828 -------RPL QSFGQTGKRS KSSSKLKLVR SLAVCEESPP PPTAEISQEN
BACU014937/1-511 ---------- ---------- ---------- ---------- ----------
ENSTTRP00000003705/1-1096 DNNIDLQRPL QSFGQTGKRS KXXXXXXXXX XXXXXXXXXX XXXXXXXXXX
ENSP00000264160/1-1099 ENNIDLQRPL QSFGQTGKRS KSSSKLKLVR SLAVCEESPP PPAPEISQEN
ENSBTAP00000017695/1-1098 DNNIDLQRPL QSFGQTGKRS KSSSKLKLVR SLAVCEESPP PPTAEISQEN
101 150
bmy_10552T0/1-828 QEKIQIQLTQ SFEKEEKPSK DEAEKEKASD KLPRKMLSRD SSQEYTDSTG
BACU014937/1-511 ---------- ---------- ---------- ---------- ----------
ENSTTRP00000003705/1-1096 XEKIQIQLTQ SFEKEEKPSK DEAEKEKASD KLPRKMLSRD SSQEYTDSTG
ENSP00000264160/1-1099 QEKIQIQLTQ SFEKEEKPSK DEAEKEKASD KLPRKMLSRD SSQEYTDSTG
ENSBTAP00000017695/1-1098 QEKIQIQLTQ SFEKEEKPPK DEAEKEKASD KLPRKMLSRD SSQEYTDSTG
151 200
bmy_10552T0/1-828 IDLHEFLVNT LKNNPRDRMM LLKLEQEILD FIGNNESPRK KFPPMTSYHR
BACU014937/1-511 ---------- ---------- ---------- ---------- ----------
ENSTTRP00000003705/1-1096 IDLHEFLVNT LKNNPRDRMM LLKLEQEILD FIGNNESPRK KFPPMTSYHR
ENSP00000264160/1-1099 IDLHEFLVNT LKNNPRDRMM LLKLEQEILD FIGNNESPRK KFPPMTSYHR
ENSBTAP00000017695/1-1098 IDLHEFLVNT LKNNPRDRMM LLKLEQEILD FIGNNESPRK KFPPMTSYHR
201 250
bmy_10552T0/1-828 MLLHRVAAYF GLDHNVDQSG KSVIVNKTSN TRIPDQKFNE HIKDDKGEDF
BACU014937/1-511 ---------- ---------- ---------- ---------- ----------
ENSTTRP00000003705/1-1096 MLLHRVAAYF GLDHNVDQSG KSVIVNKTSN TRIPDQKFNE HIKDDKGEDF
ENSP00000264160/1-1099 MLLHRVAAYF GLDHNVDQSG KSVIVNKTSN TRIPDQKFNE HIKDDKGEDF
ENSBTAP00000017695/1-1098 MLLHRVAAYF GLDHNVDQSG KAVIVNKTSN TRIPDQKFTE HIKDDKGEDF
251 300
bmy_10552T0/1-828 QKRYILKRDN SSFDKDDNQM RIRLKDDRRS KSIEEREEEY QRARDRIFSQ
BACU014937/1-511 ---------- ---------M RIRLKDDRRS KSIEEREEEY QRARDRIFSQ
ENSTTRP00000003705/1-1096 QKRYILKRDN SSFDKDDNQM RIRLKDDRRS KSIEEREEEY QRARDRIFSQ
ENSP00000264160/1-1099 QKRYILKRDN SSFDKDDNQM RIRLKDDRRS KSIEEREEEY QRARDRIFSQ
ENSBTAP00000017695/1-1098 QKRYILKRDN SSFDKDDNQM RIRLKDDRRS KSIEEREEEY QRARDRIFSQ
301 350
bmy_10552T0/1-828 DSLCSQENYI IDKRIQDEDA SSTQQRRQIF RVNKDSSGRS TNSHQSSTEN
BACU014937/1-511 DSLCSQENYI IDKRIQDEDA SSTQQRRQIF RVNKDSSGRS TNSHQSSTEN
ENSTTRP00000003705/1-1096 DSLCSQENYI IDKRIQDEDA SSTQQRRQIF RVNKDSSGRS TNSHQSSTEN
ENSP00000264160/1-1099 DSLCSQENYI IDKRLQDEDA SSTQQRRQIF RVNKDASGRS TNSHQSSTEN
ENSBTAP00000017695/1-1098 DSLCSQENYI IDKRIQDEDA NSTQQRRQIF RVNKDASGRS TNSHQSSTEN
351 400
bmy_10552T0/1-828 ELKYSEPRPW SSTDSDSSLR NFKPAVTKAS SFSGISVLTR GDSSGSSKSI
BACU014937/1-511 ELKYSEPRPW SSTDSDSSLR NFKPAVTKAS SFSGISVLTR GDSSGSSKSI
ENSTTRP00000003705/1-1096 ELKYSEPRPW SSTDSDSSLR NFKPAVTKAS SFSGISVLTR GDSSGSSKSI
ENSP00000264160/1-1099 ELKYSEPRPW SSTDSDSSLR NLKPAVTKAS SFSGISVLTR GDSSGSSKSI
ENSBTAP00000017695/1-1098 DLKYSEPRPW SSTDSDSSLR NFKPAVTKAS SFSGISVLTR GDSSGSSKSI
401 450
bmy_10552T0/1-828 GRLSKTGSES SGSVGSSTGS LSHIQQPLPG TALSQSSHGA PVVYPTVSTH
BACU014937/1-511 GRLSKTGSES SGSVGSSTGS LSHIQQPLPG TALSQSSHGA PVVYPTVSTH
ENSTTRP00000003705/1-1096 GRLSKTGSES SGSVGSSTGS LSHIQQPLPG TALSQSSHGA PVVYPTVSTH
ENSP00000264160/1-1099 GRLSKTGSES SGSVGSSTGS LSHIQQPLPG TALSQSSHGA PVVYPTVSTH
ENSBTAP00000017695/1-1098 GRLSKTGSES SGSVGSSTGS LSHIQQPLPG TALSQSSHGA PVVYPAVSTH
451 500
bmy_10552T0/1-828 SSLSFDGGLN GQVASPSTSF FLLPLEATGI PPGSILINPQ TGQPFLNPDG
BACU014937/1-511 SSLSFDGGLS GQVASPSTSF FLLPLEATGI PPGSILINPQ TGQPFLNPDG
ENSTTRP00000003705/1-1096 SSLSFDGGLN GQVASPSTSF FLLPLEATGI PPGSILINPQ TGQPFLNPDG
ENSP00000264160/1-1099 SSLSFDGGLN GQVASPSTSF FLLPLEAAGI PPGSILINPQ TGQPFINPDG
ENSBTAP00000017695/1-1098 SSLSFDGGLN GQVASPSTSF FLLPLEAAGI PPGSILINPQ TGQPFINPDG
501 550
bmy_10552T0/1-828 SPVVCSPPVT QQPVRAQVPG PPQPPLPALP PQQQAAHHIF SQQDNLGSQF
BACU014937/1-511 SPVVCSPPVT QQPVRAQVPG PPQPPLPALP PQQQAAHHIF S-QDNLGSQF
ENSTTRP00000003705/1-1096 SPVVCSPPVT QQPVRAQVPG PPQPPLPALP PQQQAAHHIF S-QDNLGSQF
ENSP00000264160/1-1099 SPVVYNPPMT QQPVRSQVPG PPQPPLPA-P PQQPAANHIF S-QDNLGSQF
ENSBTAP00000017695/1-1098 SPVVYNPPMT QQPVRTQVPG PPQPPLPPPP PQQQAANHIF SQQDNLGSQF
551 600
bmy_10552T0/1-828 SHMSLARQPS ADGSDPHATM FQSTVVLQSP QQSGYIMTAV ----PPPPPP
BACU014937/1-511 SHMSLARQPS ADGSDPHATM FQSTVVLQSP QQSGYIMTAA ----PPPPPP
ENSTTRP00000003705/1-1096 SHMSLARQPS ADGSDPHATM FQSTVVLQSP QQSGYIMTAA ------PPPP
ENSP00000264160/1-1099 SHMSLARQPS ADGSDPHAAM FQSTVVLQSP QQSGYIMTAA PPPHPPPPPP
ENSBTAP00000017695/1-1098 SHMSLARQPS ADGSDPHATM FQSTVVLQSP QQSGYIMTAA ----PPPPPP
601 650
bmy_10552T0/1-828 PPPPPPPLPP GQPVATAAYS ASGHPVSQPV LQQQGYIQQP SPQMPACYCA
BACU014937/1-511 PPPPPPPLPP GQPVPTAAYS ASGHPVSQPV LQQQGYIQQP SPQMPACYCA
ENSTTRP00000003705/1-1096 PPPPPPPLPP GQPVPTAGYS ASGHPVSQPV LQQQGYIQQP SPQMPACYCA
ENSP00000264160/1-1099 PPPPPPPLPP GQPVPTAGYP ASGHPVSQPV LQQQGYIQQP SPQMPACYCA
ENSBTAP00000017695/1-1098 PPPPPPPLPP GQPVPAPGYS ASGHPVSQPV LQQQGYIQQP SPQMPACYCA
651 700
bmy_10552T0/1-828 PGHYHSSQPQ YRPVPSVHYS SHLNQPLPQP AQQAG-EYVR CSRRIFIGFF
BACU014937/1-511 PGHYHSSQPQ YRPVPSVHYS SHLNQPLPQP AQQAGYQVMP NQQQNYQGIV
ENSTTRP00000003705/1-1096 PGHYHSSQPQ YRPVPSVHYS SHLNQPLPQP AQQAGYQVMP NQQQNYQGIV
ENSP00000264160/1-1099 PGHYHSSQPQ YRPVPSVHYN SHLNQPLPQP AQQTGYQVIP NQQQNYQGIV
ENSBTAP00000017695/1-1098 PGHYHSNQPQ YRPVPSVHYN SHLNQPLPQP AQQTGYQVMP NQQQNYQGIV
701 750
bmy_10552T0/1-828 EAFLAACRCW KVGP------ -----VCSCK CLSAKYIPLC QKWTTV----
BACU014937/1-511 GVQQPQSQSL VGGQPNSIGN QIQGVVIPYP SVPSYQVSLP QGSQGI----
ENSTTRP00000003705/1-1096 GVQQPQSQSL VGGQPNSIGN QIQGVVIPYP SVPSYQVSLP QGSQGIAHQT
ENSP00000264160/1-1099 GVQQPQSQSL VSGQPNSIGN QIQGVVIPYT SVPTYQVSLP QGSQGIPHQT
ENSBTAP00000017695/1-1098 GVQQPQSQSL VGGQPNGIGN QIQGVVIPYP SVPSYQVSLP QGSQGIAHHT
751 800
bmy_10552T0/1-828 ---------- ---------- ---------- ---------- ----------
BACU014937/1-511 ---------- ---------- ---------- ---------- ----------
ENSTTRP00000003705/1-1096 YQQPVMFPNQ SNQGSMPTAG MPVYYSIIPP GQQNNLSSSV GYLQPPGSEQ
ENSP00000264160/1-1099 YQQPVMFPNQ SNQGSMPTTG MPVYYSVIPP GQQNNLSSSV GYLQHPGSEQ
ENSBTAP00000017695/1-1098 YQQPVMFPNQ SNQGSMPAAG MPVYYSVIPP GQQNNLSSSV GYLQHPGSEQ
801 850
bmy_10552T0/1-828 ---------- ---------- -NATPPNSG- ---------- ----------
BACU014937/1-511 ---------- ---------- ---------- ---------- ----------
ENSTTRP00000003705/1-1096 VQLPRTTSPC NSQQLQGHQC AAVPPPPAGG GMVMMQLSVP NNPQSRAHSP
ENSP00000264160/1-1099 VQFPRTTSPC SSQQLQGHQC TAGPPPPPGG GMVMMQLSVP NNPQSCAHSP
ENSBTAP00000017695/1-1098 VQFPRTTSPC NSQQLQGHQC -AVAPPPPGG GMVMMQLSVP NNPQSRAHSP
851 900
bmy_10552T0/1-828 PKYLHDRWHV ---------- -----FIISD VSVVGFFLML VMKSKMHWEM
BACU014937/1-511 PISLINSLLC ---------- ---------- ------SLIS LIKD------
ENSTTRP00000003705/1-1096 PLWKQNKYYC DHQRGQKCVE FSSIDNIVQX XXXXXXXXXX XXXXXXXXXX
ENSP00000264160/1-1099 PQWKQNKYYC DHQRGQKCVE FSSVDNIVQH SPQLSSPIIS PAQSPAPAQL
ENSBTAP00000017695/1-1098 PQWKQNKYYC DHQRGQKCVE FSSVDNIVQH SPQLSSPIIS PAQSPAPAQL
901 950
bmy_10552T0/1-828 DTGT------ ----FCSDFL YRFIAISFSK FRSKLTNPIE SNIL------
BACU014937/1-511 ---------- ----LCLQQE RQFITASF-- ---------- ----------
ENSTTRP00000003705/1-1096 XXXXXXXXXX XXXXXXXXXX XXXXPGQGDA RYPLLGQPLQ YNPPAVLHGH
ENSP00000264160/1-1099 STLKTVRPSG PPLSIMPQFS RPFVPGQGDS RYPLLGQPLQ YNPPAVLHGH
ENSBTAP00000017695/1-1098 STLKTVRPSG PPLAIIPQFS RPFVSAQGDA RYPLLGQTLQ YNPPAVLHGH
951 1000
bmy_10552T0/1-828 ------RSGR RLG------- ---------- ---------- ----------
BACU014937/1-511 ---------- ---------- ---------- ---------- ----------
ENSTTRP00000003705/1-1096 IPAQQGQSGS RHGNRGRKQA KKAASTDLGA GEAVVGKVLE ITELPDGITR
ENSP00000264160/1-1099 IPNQQGQPGS RHGNRGRRQA KKAASTDLGA GETVVGKVLE ITELPDGITR
ENSBTAP00000017695/1-1098 IPAQQGQSGN RHGNRGRKQA KKAASTDLGA GEAVVGKVLE ITELPDGITR
1001 1050
bmy_10552T0/1-828 ---------- -------KYL KDKMPLV--- -FHASTEVGE QRVIEEKNSK
BACU014937/1-511 ---------- ---------- ---------- ---------- ----------
ENSTTRP00000003705/1-1096 MEAEKLFGEL FKIGAKIRWL RDPQSQPQLR RHPLCCGSGD STVNPERSKP
ENSP00000264160/1-1099 MEAEKLFGEL FKIGAKIRWL RDPQSQP--R RHPLCCGSGD NTANPERSKP
ENSBTAP00000017695/1-1098 MEAEKLFGEL FKIGAKIRWL RDPQSQPQMR RHPLCCGSGD STVNPERSKP
1051 1100
bmy_10552T0/1-828 DVLAAVF--- ---------- ---------- ---------- -FQIHLTDYP
BACU014937/1-511 ---------- ---------- ---------- ---------- ----HLANKI
ENSTTRP00000003705/1-1096 SDLASTYTVL ATFPSISAAQ NALKKQINSV NKFKLRTSKK HYDFHILERA
ENSP00000264160/1-1099 SDLASTYTVL ATFPSISAAQ NALKKQINSV NKFKLRTSKK HYDFHILERA
ENSBTAP00000017695/1-1098 SDLASTYTVL ATFPSISAAQ NALKKQINSV NKFKLRTSKK HYDFHILERA
1101 1150
bmy_10552T0/1-828 ---
BACU014937/1-511 I--
ENSTTRP00000003705/1-1096 SSQ
ENSP00000264160/1-1099 SSQ
ENSBTAP00000017695/1-1098 SSQ