KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:02:33 2014 Check: 00 .. Name: ENSTTRP00000015203/1-960 Len: 1207 Check: 6073 Weight: 1.00 Name: ENSP00000350267/1-1205 Len: 1207 Check: 6378 Weight: 1.00 Name: ENSBTAP00000017711/1-1183 Len: 1207 Check: 1350 Weight: 1.00 Name: bmy_05850T0/1-627 Len: 1207 Check: 225 Weight: 1.00 Name: BACU018043/1-1186 Len: 1207 Check: 3373 Weight: 1.00 // 1 50 ENSTTRP00000015203/1-960 ---------- ---------- ---------- ---------- ---------- ENSP00000350267/1-1205 MRKPRRKSRQ NAEGRRSPSP YSLKCSPTRE TLTYAQAQRI VEVDIDGRLH ENSBTAP00000017711/1-1183 MRKPRRKSRP NAEGRRSPSP YSLKCSPTRE TLTYAQAQRI VEVDIDGRLH bmy_05850T0/1-627 MRKPRRKSRQ NAEGRRSPSP YSLKCSPTRE TLTYAQAQRI VEVDIDGRLH BACU018043/1-1186 ---------- ---------- MSLKCSPTRE TLTYAQAQRI VEVDIDGRLH 51 100 ENSTTRP00000015203/1-960 ---------- ---------- ---------- ---------- ---------- ENSP00000350267/1-1205 RISIYDPLKI ITEDELTAQD ITECNSNKEN SEQPQFPGKS KKPSSKGKKK ENSBTAP00000017711/1-1183 RISIYDPLKI ITEDELTAQD ITECNSNKEN SEQPQFPGKS KKPSSKGKKK bmy_05850T0/1-627 RISIYDPLKI ITEDELTAQD ITECNSNKEN SEQPQFPVKS KKPSSKGKKK BACU018043/1-1186 RISIYDPLKI ITEDELTAQD ITECNSNKEN SEQPQFPVKS KKPSSKGKKK 101 150 ENSTTRP00000015203/1-960 ---------- ---------- ---------- ---------- ---------- ENSP00000350267/1-1205 ESCSKHASGT SFHLPQPSFR MVDSGIQPEA PPLPAAYYRY IEKPPEDLDA ENSBTAP00000017711/1-1183 ESCSKHASGS SFHLPQPSFR MVDSGSQPEA PPLPAAYYRY IEKSPEDLDA bmy_05850T0/1-627 ESCSKHASGT SFHLPQPSFR MVDSGSQPEA PPLPAAYYRY IEKPPEDLDA BACU018043/1-1186 ESCSKHASGT SFHLPQPSFR MVDSGSQPEA PPLPAAYYRY IEKPPEDLDA 151 200 ENSTTRP00000015203/1-960 ---------- ---------- ---------- ---------- ---------- ENSP00000350267/1-1205 EVEYDMDEED LAWLDMVNEK RRVDGHSLVS ADTFELLVDR LEKESYLESR ENSBTAP00000017711/1-1183 EVEYDMDEED LAWLDLVNEK RRVDGYSLVS ADTFELLVDR LEKESYLESR bmy_05850T0/1-627 EVEYDMDEED LAWLDMVNEK RRVDGHSLVS ADTFELLVDR LEKESYLESR BACU018043/1-1186 EVEYDMDEED LAWLDMVNEK RRVDGHSLVS ADTFELLVDR LEKESYLESR 201 250 ENSTTRP00000015203/1-960 ---------- ---------- ---------- ---------- ------PFIP ENSP00000350267/1-1205 SSGAQQSLID EDAFCCVCLD DECHNSNVIL FCDICNLAVH QECYGVPYIP ENSBTAP00000017711/1-1183 SSGAQQSLID EDAFCCVCLD DECHNSNVIL FCDICNLAVH QECYGVPYIP bmy_05850T0/1-627 SSGAQQSLID EDAFCCVCLD DECHNSNVIL FCDICNLAVH QECYGVPYIP BACU018043/1-1186 SSGAQQSLID EDAFCCVCLD DECHNSNVIL FCDICNLAVH QECYGVPYIP 251 300 ENSTTRP00000015203/1-960 EAQWVCSCSL QSPSRRVDSV LCTNKGGAFK QTSDGHWAHV VCAIWIPEVC ENSP00000350267/1-1205 EGQWLCRCCL QSPSRPVDCI LCPNKGGAFK QTSDGHWAHV VCAIWIPEVC ENSBTAP00000017711/1-1183 EGQWLCRCCL QSPSRPVDCV LCPNKGGAFK QTSDGHWAHV VCAIWIPEVC bmy_05850T0/1-627 EGQWLCRCCL QSPSRPVDCV LCPNKGGAFK QTSDGHWAHV VCAIWIPEVC BACU018043/1-1186 EGQWLCRCCL QSPSRPVDCV LCPNKGGAFK QTSDGHWAHV VCAIWIPEVC 301 350 ENSTTRP00000015203/1-960 SANTAFLEPI EGIDNI-HAR WKLTCYICKQ KGLGAAIQCH KVNCYTAFHV ENSP00000350267/1-1205 FANTVFLEPI EGIDNIPPAR WKLTCYICKQ KGLGAAIQCH KVNCYTAFHV ENSBTAP00000017711/1-1183 FANTVFLEPI EGIDNIPPAR WKLTCYICKQ KGLGAAIQCH KVNCYTAFHV bmy_05850T0/1-627 FANTVFLEPI EGIDNIPPAR WKLTCYICKQ KGLGAAIQCH KVNCYTAFHV BACU018043/1-1186 FANTVFLEPI EGIDNIPPAR WKLTCYICKQ KGLGAAIQCH KVNCYTAFHV 351 400 ENSTTRP00000015203/1-960 TCAQRAGLFM KIEPMRETSL NGTIFTVRKT AYCEAHSPPG AATARRKGDS ENSP00000350267/1-1205 TCAQRAGLFM KIEPMRETSL NGTIFTVRKT AYCEAHSPPG AATARRKGDS ENSBTAP00000017711/1-1183 TCAQRAGLFM KIEPMRETSL NGTIFTVRKT AYCEAHSPPG AATARRKGDS bmy_05850T0/1-627 TCAQRAGLFM KIEPMRETSL NGTIFTVRKT AYCEAHSPPG AATARRKGDS BACU018043/1-1186 TCAQRAGLFM KIEPMRETSL NGTIFTVRKT AYCEAHSPPG AATARRKGDS 401 450 ENSTTRP00000015203/1-960 PGSLSEAGDE EGLKEGCGEE EEKEEVEEEE EDEGQGGVGG PLKGVSKKNK ENSP00000350267/1-1205 PRSISETGDE EGLKEGDGEE EEEEEVEEEE Q-EAQGGVSG SLKGVPKKSK ENSBTAP00000017711/1-1183 PGSLSEAGDE EGLKEACEEE EEKEEVEEEE EGEGQGGVGG PLKGMSKKNK bmy_05850T0/1-627 PGSLSEAGDE EGLKEGCGEE EEKDEVEEEE EDEGQGGVGG PLKGVSKKNK BACU018043/1-1186 PGSLSEAGDE EGLKEGCGEE EEKEEVEEEE EDEGQGGVGG PLKGVSKKNK 451 500 ENSTTRP00000015203/1-960 MTLKQRIKKE PEEVGRDTPS TVPMVTVPQI PSYXXXXXXX XXXXXXXXXX ENSP00000350267/1-1205 MSLKQKIKKE PEEAGQDTPS TLPMLAVPQI PSYRLNKICS GLSFQRKNQF ENSBTAP00000017711/1-1183 MTLKQRIKKE PEEVGRDMTS TVPMVTVPRI PSYRLNKICS GLSFQRKTQF bmy_05850T0/1-627 MTLKQRIKKE PEEVGRDTPS TVPMVTVPQI PSYRLNKICS GLSFQRKNQF BACU018043/1-1186 MTLKQRIKKE PEEVGRDTPS TVPMVTVPQI PSYRLNKICS GLSFQRKNQF 501 550 ENSTTRP00000015203/1-960 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXREQD EKTNAVKEEL ENSP00000350267/1-1205 MQRLHNYWLL KRQARNGVPL IRRLHSHLQS QRNAEQREQD EKTSAVKEEL ENSBTAP00000017711/1-1183 MQRLHNYWLL KRQARNGVPL IRRLHSHLQS QRNAEQREQD EKTSAVKEEL bmy_05850T0/1-627 MQRLHNYWLL KRQARNGVPL IRRLHSHLQS QRNAEQREQD EKTNAVKEEL BACU018043/1-1186 MQRLHNYWLL KRQARNGVPL IRRLHSHLQS QRNAEQREQD EKTNAVKEEL 551 600 ENSTTRP00000015203/1-960 KYWQKLRHDL ERARLLIELI RKREKLKREQ VKVQQAAMEL ELMPFNVLLR ENSP00000350267/1-1205 KYWQKLRHDL ERARLLIELI RKREKLKREQ VKVQQAAMEL ELMPFNVLLR ENSBTAP00000017711/1-1183 KYWQKLRHDL ERARLLIELI RKREKLKREQ IKIQQAAMEL ELMPFNVLLR bmy_05850T0/1-627 KYWQKLRHDL ERARLLIELI RKREKLKREQ VKVQQAAMEL ELMPFNVLLR BACU018043/1-1186 KYWQKLRHDL ERARLLIELI RKREKLKREQ VKVQQAAMEL ELMPFNVLLR 601 650 ENSTTRP00000015203/1-960 TTLDLLQEKD PAHIFAEPVN LSEVPDYLEF ISKPMDFSTM RRKLESHLYG ENSP00000350267/1-1205 TTLDLLQEKD PAHIFAEPVN LSEVPDYLEF ISKPMDFSTM RRKLESHLYR ENSBTAP00000017711/1-1183 TTLDLLQEKD PAHIFAEPVN LSEVPDYLEF ISKPMDFSTM RRKLD----- bmy_05850T0/1-627 TTLDLLQEKD PAHIFAEPVN LSEVL-YV-- ---------- ---------- BACU018043/1-1186 TTLDLLQEKD PAHIFAEPVN LSEAN-YLEF ISKPMDFSTM RRKLESHLYR 651 700 ENSTTRP00000015203/1-960 TLEEFEEDFN LIVTNCMKYN AKDTIFHRAA VRLRDLGGAI LRHARRQAEN ENSP00000350267/1-1205 TLEEFEEDFN LIVTNCMKYN AKDTIFHRAA VRLRDLGGAI LRHARRQAEN ENSBTAP00000017711/1-1183 ---------- ---------N AKDTIFHRAA VRLRDLGGAI LRHARRQAEN bmy_05850T0/1-627 ---------- ---------- ---------- ---------- ---------- BACU018043/1-1186 TLEEFEEDFN LIVTNCMKYN AKDTIFHRAA VRLRDLGGAI LRHARRQAEN 701 750 ENSTTRP00000015203/1-960 IGYDPERGTH LPESPKLEDF YRFSWEDVDN ILIPENRAHL SPEVQLKELL ENSP00000350267/1-1205 IGYDPERGTH LPESPKLEDF YRFSWEDVDN ILIPENRAHL SPEVQLKELL ENSBTAP00000017711/1-1183 IGYDPETGTH LPESPKSEDF YRFSWEDVDN ILIPENRAHL SPEVQLKELL bmy_05850T0/1-627 ---------- ---------- ---------- ---------- ---------- BACU018043/1-1186 IGYDPERGTH LPESPKLEDF YRFSWEDVDN ILIPENRAHL SPEVQLKELL 751 800 ENSTTRP00000015203/1-960 EKLDLVSAMR SSGARTRRVR LLRREINALR QKLAQPPPPQ LASLNKTVSN ENSP00000350267/1-1205 EKLDLVSAMR SSGARTRRVR LLRREINALR QKLAQPPPPQ PPSLNKTVSN ENSBTAP00000017711/1-1183 EKLDLVSTMR SSGARTRRVR LLRREINAVR QKLAQPPPPQ PPSLNKTVSS bmy_05850T0/1-627 ---------- ---------- ---------- ---------- ---------- BACU018043/1-1186 EKLDLVSAMR SSGARTRRVR LLRREINALR QKLAQPPPPQ LASLNKTVSN 801 850 ENSTTRP00000015203/1-960 GELPAGPRGD VAVLEQAPQE EPEDDGDRDD SKMPPPPTLE PTGPAPSLSE ENSP00000350267/1-1205 GELPAGPQGD AAVLEQALQE EPEDDGDRDD SKLPPPPTLE PTGPAPSLSE ENSBTAP00000017711/1-1183 GELPAGPRGD VAVLEQAPQE EPEDNGDRDD SKMPPPPTLE PTGPAPSLSE bmy_05850T0/1-627 ---------- ---------- ---------- ---------- ---------- BACU018043/1-1186 GELPAGPRGD VAVLEQAPQE EPEDDGDRDD SKMPPPPTLE PTGPAPSLSE 851 900 ENSTTRP00000015203/1-960 QESPPDPPTL KPISDSKPPS RFPKPRKVEE DELLEKSPLQ LGSEPLQRLL ENSP00000350267/1-1205 QESPPEPPTL KPINDSKPPS RFLKPRKVEE DELLEKSPLQ LGNEPLQRLL ENSBTAP00000017711/1-1183 QESPPDPPTL KPINDSKPPS RLLKPRKAEE DELLEKSPLQ LGSEPLQRLL bmy_05850T0/1-627 ---------- ---------- ---------- ---------- ---------- BACU018043/1-1186 QESPPDPPTL KPINDSKPPS RFPKPRKVEE DELLEKSPLQ LGSEPLQRLL 901 950 ENSTTRP00000015203/1-960 SDNGINRVSL MTPDTSPAGA PLSGVGRRTS VLFKKAKNGV KLQRSPDRAL ENSP00000350267/1-1205 SDNGINRLSL MAPDT-PAGT PLSGVGRRTS VLFKKAKNGV KLQRSPDRVL ENSBTAP00000017711/1-1183 SDNGINRVSL MAPDTSPTGA PLSGVGRRTS VLFKKARNGV KLQRSPDRAL bmy_05850T0/1-627 ---------- ---------- ---------- ---------- ---------- BACU018043/1-1186 SDNGINRVSL MTPDTSPAGA PLSGVGRRTS VLFKKAKNGV KLQRSPDRAL 951 1000 ENSTTRP00000015203/1-960 ENGEDHGAVG SPASPTSIED EQHSRKRPRS RSCSESEGER SPQQGEETGV ENSP00000350267/1-1205 ENGEDHGVAG SPASPASIEE ERHSRKRPRS RSCSESEGER SPQQEEETGM ENSBTAP00000017711/1-1183 ENGEDHGTAD SPVSPASIED ERHSRKRPRS RSCSQSEGER SPQQEEETGV bmy_05850T0/1-627 ---------- ---------- ---------- ---------- ---------- BACU018043/1-1186 ENGEDHGAVG SPASPTSIED EQHSRKRPRS RSCSESEGER SPQQEEETGV 1001 1050 ENSTTRP00000015203/1-960 TNGFGKHTES GSDSECSLGL SGGLAFEACS GLTPPKRSRG KPALSRVPFL ENSP00000350267/1-1205 TNGFGKHTES GSDSECSLGL SGGLAFEACS GLTPPKRSRG KPALSRVPFL ENSBTAP00000017711/1-1183 TNGFGKHTES GSDSECSLGL GSGLAFEACS GRTPPKRSRG KPALSRVPFL bmy_05850T0/1-627 ---------- ---------- ---------- ---------- ---------- BACU018043/1-1186 TNGFGKHTES GSDSECSLGL SGGLAFEACS GLTPPKRSRG KPALSRVPFL 1051 1100 ENSTTRP00000015203/1-960 EGVNGDSDYN GSGRSLLMPF EDRGDLEPLE LVWAKCRGYP SYPALIIDPK ENSP00000350267/1-1205 EGVNGDSDYN GSGRSLLLPF EDRGDLEPLE LVWAKCRGYP SYPALIIDPK ENSBTAP00000017711/1-1183 EGVNGDSDYN SSGRSLLMPF EDRGDLEPLE LVWAKCRGYP SYPALIIDPK bmy_05850T0/1-627 ---------- ---------- ---------- ---------- ---------- BACU018043/1-1186 EGVNGDSDYN GSGRSLLMPF EDRGDLEPLE LVWAKCRGYP SYPALIIDPK 1101 1150 ENSTTRP00000015203/1-960 MPREGLLHNG VPIPVPPLDV LKLGEQKQAE AGEKLFLVLF FDNKRTWQWL ENSP00000350267/1-1205 MPREGLLHNG VPIPVPPLDV LKLGEQKQAE AGEKLFLVLF FDNKRTWQWL ENSBTAP00000017711/1-1183 MPREGLLHNG VPIPVPPLDV LKLGEQKQAE AGEKLFLVLF FDNKRTWQWL bmy_05850T0/1-627 ---------- ---------- ---------- ---------- ---------- BACU018043/1-1186 MPREGLLHNG VPIPVPPLDV LKLGEQKQAE AGEKLFLVLF FDNKRTWQWL 1151 1200 ENSTTRP00000015203/1-960 PRDKVLPLGV EDTVDKLKML EGRKTSIRKS VQVAYDRAMI HLSRVRGPHS ENSP00000350267/1-1205 PRDKVLPLGV EDTVDKLKML EGRKTSIRKS VQVAYDRAMI HLSRVRGPHS ENSBTAP00000017711/1-1183 PRDKVLPLGV EDTVDKLKML EGRKTSIRKS VQVAYDRAMI HLSRVRGPHS bmy_05850T0/1-627 ---------- ---------- ---------- ---------- ---------- BACU018043/1-1186 PRDKVLPLGV EDTVDKLKML EGRKTSIRKS VQVAYDRAMI HLSRVRGPHS 1201 1250 ENSTTRP00000015203/1-960 FVTSSYL ENSP00000350267/1-1205 FVTSSYL ENSBTAP00000017711/1-1183 FVTSSYL bmy_05850T0/1-627 ------- BACU018043/1-1186 FVTSSYL