KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:02:35 2014 Check: 00 .. Name: ENSP00000362195/1-863 Len: 951 Check: 1041 Weight: 1.00 Name: ENSBTAP00000017732/1-841 Len: 951 Check: 949 Weight: 1.00 Name: ENSTTRP00000002196/1-853 Len: 951 Check: 5034 Weight: 1.00 Name: bmy_10800T0/1-823 Len: 951 Check: 2812 Weight: 1.00 Name: BACU009678/1-840 Len: 951 Check: 6659 Weight: 1.00 // 1 50 ENSP00000362195/1-863 MARLGNCSLT WAALIILLLP GSLEECGHIS VSAPIVHLGD PITASCIIKQ ENSBTAP00000017732/1-841 MVGLGAWSLV GAALIILLLP RSLEQCGHIL LSAPIVRLGD QVTASCIINR ENSTTRP00000002196/1-853 MAGLGAWNLA RAALIILLLP RSLEQCGHIS LSAPIVRLGD PITASCTISQ bmy_10800T0/1-823 ---------- ---------- --LEQCGHIS LSAPIVRLGD PITASCVISQ BACU009678/1-840 MAGLGAWNLA GAALIILLFP RSLEQCGHIS LSAPIIRRGD PITASCIISQ 51 100 ENSP00000362195/1-863 NCSHLDPEPQ ILWRLGAELQ PGGRQQRLSD GTQESIITLP HLNHTQAFLS ENSBTAP00000017732/1-841 NCSHLGTDWR VVWKLEPELH PRERRQHLPN GTLQSTITLP HLNHSRVLLS ENSTTRP00000002196/1-853 NCSRLDSESH IVWKLEAELQ PGERQQYLPN GTLQSTITLP HLNRSRALLS bmy_10800T0/1-823 NCSHLGSGSH IVWKLEAELQ PGERQQCLPN GTLQSTITLP HLNRSRALLS BACU009678/1-840 NCSHLGSESH IVWKLEAELQ PGERQQYLPN GTLQSTITLP HLNRSRALLS 101 150 ENSP00000362195/1-863 CCLNWGNSLQ ILDQVELRAG YPPAIPHNLS CLMNLTTSSL ICQWEPGPET ENSBTAP00000017732/1-841 CCLHWGNSLQ ILDQAELQAG YPPTAPYNLS CIMNLTTNSL ICQWEPGPNT ENSTTRP00000002196/1-853 CCLHWGNSLQ ILYQAELQAC YPPATPHNLS CLMNLTTNSL TCQWEPGPNT bmy_10800T0/1-823 CCLHWGNSLQ ILDQAELQAG C--------- ---------- -------PNT BACU009678/1-840 CCLHWGNSLQ ILDQAELQAG YPPATPHNLS CLMNLTTNSL TCQWEPGPNT 151 200 ENSP00000362195/1-863 HLPTSFTLKS FKSRGNCQTQ GDSILDCVPK DGQSHCCIPR KHLLLYQNMG ENSBTAP00000017732/1-841 HLSTSFTLKS FKSQDKCQTQ KDSIPDCVPE VGQSHCSIPR KHLQLYQNMS ENSTTRP00000002196/1-853 HLSTNFTLKS FKSRGNCQSR EDSIPDCVPE DGQSHCSIPR KHLQLYQNMG bmy_10800T0/1-823 HLPTNFTLKS FKSRGNCQSQ EDPIPDCVPE DGQSHCSIPR KHLQLYQNTG BACU009678/1-840 HLSTNFTLKS FKSRGNCQSQ EDPIPDCVPE DGQSHCSIPR KHLQLYQNTG 201 250 ENSP00000362195/1-863 IWVQAENALG TSMSPQLCLD PMDV------ ---------- ---------V ENSBTAP00000017732/1-841 IWVQARNALG TSASPKLCLA PMDV------ ---------- ---------V ENSTTRP00000002196/1-853 IWVQAKNALG TSVSPKLCLV PMDV------ ---------- ---------V bmy_10800T0/1-823 IWVQAKNALG TSVSPKLCLV PMDVGRQVEA RIEPSRTDQR KGLTTPLLAV BACU009678/1-840 IWVQAKNALG TSVSPKLCLV PMDV------ ---------- ---------V 251 300 ENSP00000362195/1-863 KLEPPMLRTM DPSPEAAPPQ AGCLQLCWEP WQPGLHINQK CELRHKPQRG ENSBTAP00000017732/1-841 KLEPPTLWAL EPSPAVAPPQ PGCLRLRWET WRPSLYIEQK CELRHQPRLG ENSTTRP00000002196/1-853 KLEPPTLWAL GPSPEVAPPQ PGCLRLRWET WKPSLHIDQK CELRHQPLLG bmy_10800T0/1-823 KLEPPTLWAL GPSPEVAPPQ PGCLRLRWET WKPSLHIDQK CELRHQPRLG BACU009678/1-840 KLEPPTLWAL GPSPEVAPPQ PGCLRLRWET WKPSLHIDQK CELRHQPRLG 301 350 ENSP00000362195/1-863 EASWAL---- ---------- -------VGP LPLEALQYEL CGLLPATAYT ENSBTAP00000017732/1-841 EAGWDL---- ---------- -------VSA LPARTSQYEL CGLLPSTAYT ENSTTRP00000002196/1-853 EASWDL---- ---------- -------VGA LPSRTLQYEL CGLLPSTAYA bmy_10800T0/1-823 EASWDLGKLS WHRRAQRSRL RATPPHQVGA LPSRTLQYEL CGLLPSTAYA BACU009678/1-840 EASWDL---- ---------- -------VGA LPSRTLQYEL CGLLPSTAYA 351 400 ENSP00000362195/1-863 LQIRCIRWPL PGHWSDWSPS LELRTTERAP TVRLDTWWRQ RQLDPRT--V ENSBTAP00000017732/1-841 LQMRCTRWRL PGHWSEWSPS LELTTAQRAP IVRLDTWWRQ RQLDPETVTV ENSTTRP00000002196/1-853 LQMRCTRWRL PGHWSNWSPS LELTTTQRAP TVRMDTWWRQ RQLDPRTVDV bmy_10800T0/1-823 LQMRCTRWRL PGHWSNWSPS LELTTTQRAP IVRLDTWWRQ RQLDPRTVDV BACU009678/1-840 LQMRCTRWRL PGHWSNWSPS LELTTTQRAP IVRLDTWWRQ RQLDPRTVDV 401 450 ENSP00000362195/1-863 QLFWKPVPLE EDSGRIQGYV VSWRPSGQAG AILPLCNTTE LSCTFHLPSE ENSBTAP00000017732/1-841 QLFWKPIALE EDSGQIQGYL VSWRPSDQAG AEPTLCDTTE LNCTFQLPSE ENSTTRP00000002196/1-853 QLFWQPVPLE EDSGQIQGYL VSLRPSDQAG ADPMLCNTTE LNCTFQLPSE bmy_10800T0/1-823 QLFWQPVPLE EDSGQIQGYL VSWRPSDQAG ADPMLCNTTE LNCTFQLPSE BACU009678/1-840 QLFWQPVPLE EDSGQIQGYL VSWRPSDQAG ADPMLCNTTE LNCTFQLPSE 451 500 ENSP00000362195/1-863 AQEVALVAYN SAGTSRPTPV VFSESRGPAL TRLHAMARDP HSLWVGWEPP ENSBTAP00000017732/1-841 AREVVLKAYN TAGTSHPTPV VFLESRGPPL GRLHTTARDP HSLWVGWEPP ENSTTRP00000002196/1-853 AREVILEAYN TAGTSHPTPV VFLESGGPPL GRLHTMARDP HSLWVGWEPP bmy_10800T0/1-823 ARE------- ---------- ---------- ---------- ---------- BACU009678/1-840 AREVILEAYN TAGTSHPTPV VFLESGGPPL GRLHTMARDP HSLWVGWEPP 501 550 ENSP00000362195/1-863 NPWPQGYVIE WGLGPPSASN SNKTWRMEQN GRATGFLLKE NIRPFQLYEI ENSBTAP00000017732/1-841 SPQPQGYVIE WGLSPPSPNG SPMTWRMEHN GSIAGTLLQE NIRPFQLYEI ENSTTRP00000002196/1-853 SPQPRGYVIE WGLGPPSPSG SPKMWRMEHN GSIAGTLLQE NIRPFQLYEI bmy_10800T0/1-823 -----GYVIE WGLGPPSPSG SPKTWRMEHN GSIAGTLLQE NIRPFQLYEI BACU009678/1-840 SPQPRGYVIE WGIGPPSPSG SPKTWRMEHN GSIAGTLLQE NIRPFQLYEI 551 600 ENSP00000362195/1-863 IVTPLYQDTM GPSQHVYAYS QEMAPSHAPE LHLKHIGKTW AQLEWVPEPP ENSBTAP00000017732/1-841 TVTPLYQDTK GPSQHIYAYS QEAAPSHGPE LHLRHIGKTW AQLEWVPEAP ENSTTRP00000002196/1-853 TVTPLYQDTK GPSQHIYAYS QEMAP-HG-E LHL-HI-QTG TQLD---AEP bmy_10800T0/1-823 TVTPLYQDTK GPSQHIYAYS QEMAPSHGPE LHLRHIGKTW AQLEWVPEAP BACU009678/1-840 TVTPLYQDTK GPSQHIYAYS QEMAPSHGPE LHLRHIGKTW AQLEWVPEAP 601 650 ENSP00000362195/1-863 ELGKSPLTHY TIFWTNAQNQ SFS------- ---------- ---------- ENSBTAP00000017732/1-841 ELGKSPLTHY TIFWTNTQDQ SFS------- ---------- ---------- ENSTTRP00000002196/1-853 ELGRSPLTHY TIFWTNAQDR SFS------- ---------- ---------- bmy_10800T0/1-823 ELGKSPLTHY TIFWTNAQDQ SFCESILSAP QPQKAREGGF RSPGEAQQPA BACU009678/1-840 ELGKSPLTHY TIFWTNAQDQ SFY------- ---------- ---------- 651 700 ENSP00000362195/1-863 ---------- AILNASSRGF VLHGLEPASL YHIHLMAASQ AGATNSTVLT ENSBTAP00000017732/1-841 ---------- TVLNASTHSF VLRGLEPSSL YHVQLMAASQ VWAANSTSLT ENSTTRP00000002196/1-853 ---------- TVLNASSHSF VLRGLEPSSL YHVHLMAASQ AWATNSTSLT bmy_10800T0/1-823 QIHHSPLLPD TVLNASSHSF VLRGLEPSSL YHVHLMATSQ AWATNSTSLT BACU009678/1-840 ---------- TVLNASSHSF VLRGLEPSTL YHVHLMAASQ AWATNSTSLT 701 750 ENSP00000362195/1-863 LMTLTPEGSE LHIILGLFGL LLLLTCLCGT AWLCCSPNRK NPLWPSVPDP ENSBTAP00000017732/1-841 LMTLTLEESE LHILLGLFGL LVLLICLCGA AQFCCRPSRK YSLWPSVPDP ENSTTRP00000002196/1-853 LMTLALEESE LHILLGLFGL LVLLICLCGA TQLCCRPSRK NPLWPSVPDP bmy_10800T0/1-823 LMTLALEESE LHILLGLFGL LVLLICLCGA AQLCCRP-RK NPLWPSVPDP BACU009678/1-840 LMTLALEESE LHILLGLFGL LVLLICLCGA AQLCCRP-RK NPLWPSVPDP 751 800 ENSP00000362195/1-863 AHSSLGSWVP TIMEELPGPR QGQWLGQTSE MSRALTPHPC VQDAFQLPGL ENSBTAP00000017732/1-841 ARSSLGSWVP TITAE----- ---------- ---------- --DILQLPSL ENSTTRP00000002196/1-853 AHSSLGSWVP TITTEC---- ----LGQISE MNQALTPHPY VQDTFQLPSL bmy_10800T0/1-823 AHSSLGSWVP TITTE----- ---------- ---------- --DTFQLPSL BACU009678/1-840 AHSSLGSWVP TITTE----- ---------- ---------- --DTFQLPSL 801 850 ENSP00000362195/1-863 ---GTPPITK LTVLEEDEKK PVPWESHNSS ETCGLPTLVQ TYVLQGDPRA ENSBTAP00000017732/1-841 RDPGMPPITK ITVLEEEEKK PGPWESNASS GPGSLSTLVQ AYVLQGDPRV ENSTTRP00000002196/1-853 RDSSMPPITK ITVLEEEEKK PGPWESNDSS GTCGLPSLVQ AYVLQGDPRV bmy_10800T0/1-823 RDSSMPPITK ITVLEEEEKK PGPWESNDSS GTCGLPSLVQ AYVLQGDPRV BACU009678/1-840 RDSSMPPITK ITVLEEEEKK PGPWESNDSS GTCGLPSLVQ AYVLQGDPRV 851 900 ENSP00000362195/1-863 VSTQPQSQSG TSDQVLYGQL LGSPTSPGPG HYLRCDSTQP LLAGLTPSPK ENSBTAP00000017732/1-841 PSAQPQPQPG NSDQVLYVQV LGSPTGPGPG HYLRCDSTQP LLEGLSPSPK ENSTTRP00000002196/1-853 PRIQPQPQSG TSDQVLYVQV LGSPTGPRPG HYLRCDSTQP LLGGLTPSPK bmy_10800T0/1-823 PCTQPQPQXG TSDQVLYVQV LGSPTGPGPG HYLRCDSTQP LLGGLTPSPK BACU009678/1-840 PCTQPQPQSG TSDQVLYVQV LGSPTGPGPG HYLRCDSTQP LLGGLTPSPK 901 950 ENSP00000362195/1-863 SYENLWFQAS PLGTLVTPAP SQEDDCVFGP LLNFPLLQGI RVHGMEALGS ENSBTAP00000017732/1-841 SYENLWFQTS SPGTPEPLVP HPEDDSIFEP LLDFPLLQGL RVSGAEGLGG ENSTTRP00000002196/1-853 SYENLWFQTS PLGTPEPLVP NPEDDCIFEP LFDFPLLQGL RVSGVEGLGG bmy_10800T0/1-823 SYENLWFQTS PLGTPEPLVP NPEDDCIFEP LLDFPLLQGL RVSGVEGLGG BACU009678/1-840 SYENLWFQTS PLGTPDPLVP NPEDDCIFEP LLDFPLLQGL RVSGVEGLGG 951 1000 ENSP00000362195/1-863 F ENSBTAP00000017732/1-841 F ENSTTRP00000002196/1-853 F bmy_10800T0/1-823 F BACU009678/1-840 F