KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:02:36 2014 Check: 00 .. Name: ENSP00000370555/1-501 Len: 986 Check: 8527 Weight: 1.00 Name: ENSTTRP00000007433/1-564 Len: 986 Check: 2138 Weight: 1.00 Name: bmy_14411T0/1-428 Len: 986 Check: 2446 Weight: 1.00 Name: BACU005059/1-839 Len: 986 Check: 1111 Weight: 1.00 Name: ENSBTAP00000017744/1-473 Len: 986 Check: 9619 Weight: 1.00 // 1 50 ENSP00000370555/1-501 ---------- ---------- ---------- ---------- --------MS ENSTTRP00000007433/1-564 ---------- ---------- ---------- ---------- ---------- bmy_14411T0/1-428 MGWFV----- ---------- ---------- ---------- ------GQRV BACU005059/1-839 MLWVLPTLDT AQSGIPRVTV QEKNLSPPCH KICQDFDLSH ALDDHDKKPT ENSBTAP00000017744/1-473 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000370555/1-501 ETEFHHGAQA GLEL------ ---------- ---------- ---------- ENSTTRP00000007433/1-564 -AGLARGCAV AWTS------ ---------- ---------- ---------- bmy_14411T0/1-428 NAWASHGRGD PWEF------ ---------- ---------- ---------- BACU005059/1-839 PAPPKQGTDD NFNLEDALGG GNNDPVSPAP PKPKPNPNPN QPGSSDGFSD ENSBTAP00000017744/1-473 ---------- ---------- ---------- ---------- ---------- 101 150 ENSP00000370555/1-501 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000007433/1-564 ---------- ---------- ---------- ---------- ---------- bmy_14411T0/1-428 ---------- ---------- ---------- ---------- ---------- BACU005059/1-839 LDLTDGTSDG GGGGGGKQRH DGEEQADSPG VVPGIVGAVA VAVAGAISSF ENSBTAP00000017744/1-473 ---------- ---------- ---------- ---------- ---------- 151 200 ENSP00000370555/1-501 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000007433/1-564 ---------- ---------- ---------- ---------- ---------- bmy_14411T0/1-428 ---------- ---------- ---------- ---------- ------MPLR BACU005059/1-839 IAYQKKKLCF KENADQGEVN MENHQGANAE PPGQGDFDLA DALDDPEPTK ENSBTAP00000017744/1-473 ---------- ---------- ---------- ---------- ---------- 201 250 ENSP00000370555/1-501 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000007433/1-564 ---------- --ARGGRRGR GRASGAQPSR P--------- -----GRGAG bmy_14411T0/1-428 LWEDRAFGSP HPAYPPRGQV GGVTGYSDKD PGLIPQ---- -QADCGQMLG BACU005059/1-839 KPSSDIYPKP RPPYQPQPGN PDNSGNIYPR PKPMPRPQPG GSDNSGGGDG ENSBTAP00000017744/1-473 ---------- ---------- ---------- ---------- ---------- 251 300 ENSP00000370555/1-501 LRSSNSPTSA SQSAG----- ---------- ---------- ---------- ENSTTRP00000007433/1-564 APGTRGVTGA GGQ------- ---------- ---------- ---------- bmy_14411T0/1-428 LRRALAPQGC SSVLSAFSWR SDL--VIQRA VSMLLFLLCA LERR------ BACU005059/1-839 YPSHGNPQGR NGLLSTMWNK MDYEHIKKRI VREQRDKRHP DDKRKIWLVF ENSBTAP00000017744/1-473 ---------- ---------- ---------- ---------- ---------- 301 350 ENSP00000370555/1-501 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000007433/1-564 ---------- --------RL SERRXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_14411T0/1-428 -IVGAEKADF LPCAAVCCQI LRREAEKSVC SRWRFGALQS EKRIFCQPAG BACU005059/1-839 NVVEIKVCDI FRAGSPVAQF LQRRNVHSFC RSVFPGPLIP QDMTTCWTGK ENSBTAP00000017744/1-473 ---------- ---------- ---------- ---------- ---------- 351 400 ENSP00000370555/1-501 ---------- ---------- ---------- MTVTDQAFVT LATNDIYCQG ENSTTRP00000007433/1-564 XXXXXXXXXX XXXXXXX--- ---------- XXXSDQAFVT LATNDVYCQG bmy_14411T0/1-428 VNIMVAFRRD VRTHRPRNVL ERA------- HLVSDQAFVT LATNDVYCQG BACU005059/1-839 VQQVGEFPRY RLASRALDPT GHDNVLDGQG PAVSDQAFVT LATNDVYCQG ENSBTAP00000017744/1-473 ---------- ---------- ---------- STVSDQAFVT LATNDVYCQG 401 450 ENSP00000370555/1-501 ALVLGQSLRR HRLTRKLVVL ITPQVSSLL- ---------- ---------- ENSTTRP00000007433/1-564 ALVLGQSLRD QRATRRLVVL VTPQVSNLL- ---------- ---------- bmy_14411T0/1-428 ALVLGQSLRD HRATRRLVVL VTPQVSNLLR EIQMIHIDTR RSEALLLTSD BACU005059/1-839 ALVLGQSLRD HRATRRLVVL VTPQVSNLL- ---------- ---------- ENSBTAP00000017744/1-473 ALVLGQSLRE HRATRRLVVL VTPQVSNPL- ---------- ---------- 451 500 ENSP00000370555/1-501 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000007433/1-564 ---------- ---------- ---------- ---------- ---------- bmy_14411T0/1-428 NGRNGECYQR LNWGKDLGVG NCKGCSVKLG TMIPSGPKEK EKRRKYICVQ BACU005059/1-839 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000017744/1-473 ---------- ---------- ---------- ---------- ---------- 501 550 ENSP00000370555/1-501 ---------- ---------- -----RVILS KVFDEVIEVN LIDSADYIHL ENSTTRP00000007433/1-564 ---------- ---------- -----RVILS RVFDEVIEVN LIDSVDYIHL bmy_14411T0/1-428 WTFPYARATG SSESDQGLQW TQRWERVILS RVFDEVIEVN LIDSVDYIHL BACU005059/1-839 ---------- ---------- -----RVVLS RVFDEVIEVN LIDSVDYIHL ENSBTAP00000017744/1-473 ---------- ---------- -----RVILS RVFDEVIEVN LIDSADYVHL 551 600 ENSP00000370555/1-501 AFLKRPELGL TLTKLHCWTL THYSKCVFLD ADTLVLSNVD ELFDRGEFSA ENSTTRP00000007433/1-564 AFLKRPELGV TLTKLHCWTL IHYSKCVFLD ADTLVLSNID ELFSRRELSA bmy_14411T0/1-428 AFLKRPELGV TLTKLHCWTL THYSKCVFLD ADTLV----- ---------- BACU005059/1-839 AFLKRPELGV TLTKLHCWTL THYSKCVFLD ADTLVLSNID ELFNRTEFSA ENSBTAP00000017744/1-473 AFLKRPDLGI TLTKLHCWTL TRYSKCVFLD ADTLVLSNID ELFDRREFSA 601 650 ENSP00000370555/1-501 APDPGWPDCF NSGVFVFQPS LHTHKLLLQH AMEHGSFDG- ---------- ENSTTRP00000007433/1-564 APDPGWPDCF NSGVFVFQPS LETHGLLLRH ATDHGSFDG- ---------- bmy_14411T0/1-428 ---------- ---------- ---------- STREG----- ---------- BACU005059/1-839 APDPGWPDCF NSGVFVFQPS LETHGLLLQH ATDHGSFDAP PPRICERQIK ENSBTAP00000017744/1-473 APDPGWPDCF NSGVFVFQPS LETHSLLLQH ATDHGSFDG- ---------- 651 700 ENSP00000370555/1-501 ---------- -----ADQGL LNSFFRNWST TDIHKHLPFI YNLSSNTMYT ENSTTRP00000007433/1-564 ---------- -----ADQGL LNSFFSNWST ADIQKHLPFI YNLSSNTAYT bmy_14411T0/1-428 ---------- -----KDQTL ---------- ---------- ---------- BACU005059/1-839 DGDGRTSPER DEDVRADQGL LNSFFSSWST ADIQKHLPFI YNLSSNTAYT ENSBTAP00000017744/1-473 ---------- -----ADQGL LNSFFSNWST ADIQKHLPFI YNLSSNTTYT 701 750 ENSP00000370555/1-501 YSPAFKQFGS SAKVVHFLGS MKPWNYKYNP QSGSVLEQGS ASSSQHQAAF ENSTTRP00000007433/1-564 YSPAFKQFGS SAKV-HFLGS TKPCNYKYNP QTGSVLEEGS GSVSQHQTSF bmy_14411T0/1-428 ---------- -----HLLRN PRQRPCP--- ---SLLKQAA SSC------- BACU005059/1-839 YSPAFKQFGS SAKVVHFLGS TKPWNYKYSP QTGSVLEEGS GPVNQHQTSF ENSBTAP00000017744/1-473 YSPAFKQFGS SAKVVHFLGS SKPWDCKYNP QTGSVLEEGS GRADQHQTSF 751 800 ENSP00000370555/1-501 LHLWWTVYQN NVLPLYKSVQ AGEARASPGH T--------- ----LCHSDV ENSTTRP00000007433/1-564 LXXXXXXXXX XXXXXXXXXX XXXXXXXXXX X--------- ----AHLGGA bmy_14411T0/1-428 ---WW----- ---------- ---------- ---------- ---------- BACU005059/1-839 LNLWWGIYHR SILPLYENIR HEDEQTSPGH T--------- ----AQLGGA ENSBTAP00000017744/1-473 LNQWWGIYHR SILPLCEDIR NKDHHAPPGH TTRATLLSVN VFTQAHLGGA 801 850 ENSP00000370555/1-501 GGPCADSASG VGEPCENSTP SAGVPCANSP LGSNQPAQGL PEPTQIVDET ENSTTRP00000007433/1-564 GVPCSSSAPT AEGSCANAVP RSGEPYTSWA EGPRQP---W PESTMVVVEE bmy_14411T0/1-428 ---------- ---------- ---------- ---------- ---------- BACU005059/1-839 GVPCSSSAPT AEGSCANGVL RSGEPCTSWA EGPRQP---W PERTLVVVEE ENSBTAP00000017744/1-473 GVPCSSAAAA AEGSCANPAE GPRQACSADA ---------- SERIMGVEED 851 900 ENSP00000370555/1-501 LSL-PEGRRS EDMIACPETE TPAVITCDPL SQPSPQPADF TETETILQPA ENSTTRP00000007433/1-564 TPASPDACPV EDMIGWPEME TSSGVMCDPL SPPSTQFADF TGTQTSSQPV bmy_14411T0/1-428 IPT------- ---------- ---------- ---------- ---------- BACU005059/1-839 TPASPDACPA ED-------- ---------- ---------- -------QPV ENSBTAP00000017744/1-473 IPT-RAACPS EETVGWREIE TRAEVRRNVF SAPSPQFADL SEIQLALRRA 901 950 ENSP00000370555/1-501 NKVESVSSEE TFEPSQELPA EALRDPSLQD ALEVDLAVSV SQISIEEKVK ENSTTRP00000007433/1-564 ESAEGGPPEE ALEPRREPPV DVTRDPSLQD ALEVDLAISV SEISIEE--K bmy_14411T0/1-428 ---------- ---------- ---------- ---------- ---------- BACU005059/1-839 ESTEGGPSEE ALEPSREPPV DVTKDPSLQD ALEVDLAISV SEISLEEKVK ENSBTAP00000017744/1-473 EKAGGAPPED ALEPSREPPA DVSRDPSPQD ALEVDLTISV SQISIEEKLK 951 1000 ENSP00000370555/1-501 ELSPEEERRK WEEGRIDYMG KDAFARIQEK LDRFLQ ENSTTRP00000007433/1-564 ALSPDEERRK WEEGRIDYLG KDAFVRIQEK LDRFLQ bmy_14411T0/1-428 ---------- ---------- ---------- ------ BACU005059/1-839 ALSPEEERRK WEEGCIDYLG KDAFVRIQEK LDRFLQ ENSBTAP00000017744/1-473 VLSPEEERRK WEEGRMDYLG KDAFARIQEK LDRFLQ