KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:02:41 2014 Check: 00 .. Name: BACU002121/1-1117 Len: 1129 Check: 6753 Weight: 1.00 Name: ENSP00000316842/1-739 Len: 1129 Check: 7146 Weight: 1.00 Name: ENSBTAP00000017753/1-738 Len: 1129 Check: 577 Weight: 1.00 Name: ENSTTRP00000013557/1-700 Len: 1129 Check: 8246 Weight: 1.00 Name: bmy_06570T0/1-715 Len: 1129 Check: 8407 Weight: 1.00 // 1 50 BACU002121/1-1117 MSAEVRLRRL QQLVLDPSFL GLEPLLDLLL GVHQELGASD LAQDKHVADF ENSP00000316842/1-739 ---------- ------MATL PAEPSAGPAA GGEAV-AAAA ATEEEE---- ENSBTAP00000017753/1-738 ---------- ------MATL PAEPSARPAA GGEAV-VAAA ATEEEE---- ENSTTRP00000013557/1-700 ---------- ---------- ---------- ---------- ---ERG---- bmy_06570T0/1-715 ---------- ------MATL PAEPSAGPAA GGEAVAAAAA ATEEEE---- 51 100 BACU002121/1-1117 LEWVEPIAER LKEARLQRDD FEILKVIGRG AFSEVAVVKM KHTGQVYAMK ENSP00000316842/1-739 ---------- -EEAR----- ---------- ---------- ---------- ENSBTAP00000017753/1-738 ---------- -EEAR----- ---------- ---------- ---------- ENSTTRP00000013557/1-700 ---------- -EEAR----- ---------- ---------- ---------- bmy_06570T0/1-715 ---------- -EEAR----- ---------- ---------- ---------- 101 150 BACU002121/1-1117 IMNKWDMLKR GEVSCFREER DVLVNGDQRW ITQLHFAFQD ENYLYLVMEY ENSP00000316842/1-739 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000017753/1-738 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000013557/1-700 ---------- ---------- ---------- ---------- ---------- bmy_06570T0/1-715 ---------- ---------- ---------- ---------- ---------- 151 200 BACU002121/1-1117 YVGGDLLTLL SKFGERIPAE MARFYLAEIV MAIDSVHRLG YVHRDIKPDN ENSP00000316842/1-739 ----QLLQTL Q--------- ---------- ---------- ---------- ENSBTAP00000017753/1-738 ----QLLQTL Q--------- ---------- ---------- ---------- ENSTTRP00000013557/1-700 ----QLQTQ- ---------- ---------- ---------- ---------- bmy_06570T0/1-715 ----QLLQTL Q--------- ---------- ---------- ---------- 201 250 BACU002121/1-1117 ILLDRCGHIR LADFGSCLKL RADGTVRSLV AVGTPDYLSP EILQAVGGGP ENSP00000316842/1-739 ---------- -AAEGEAAAA AGAGAGAAAA GAEGP----- -------GSP ENSBTAP00000017753/1-738 ---------- -AAEGEAAAA AGAGAGETAV KVEGP----- -------GSP ENSTTRP00000013557/1-700 ---------- --AEGEAARR AGG----EAV KVEGP----- -------GSP bmy_06570T0/1-715 ---------- -AAEGEAAAA ---------- ---------- ---------- 251 300 BACU002121/1-1117 GTGSYGPECD WWALGVFAYE MFYGQTPFYA DSTAETYGKI VHYKEHLSLP ENSP00000316842/1-739 GVPGSPPE-- ---------- ---------- ---------- ---------- ENSBTAP00000017753/1-738 GVPGSPPE-- ---------- ---------- ---------- ---------- ENSTTRP00000013557/1-700 GVPGSPPE-- ---------- ---------- ---------- ---------- bmy_06570T0/1-715 ------PE-- ---------- ---------- ---------- ---------- 301 350 BACU002121/1-1117 LADAGVPDEA RDLIQQLLCP PEMRLGRNGA GDFQKHPFFF GLDWDSLRDS ENSP00000316842/1-739 -AASEPPTGL RFSPEQVACV CEALLQAGHA GRLSR---FL G--------A ENSBTAP00000017753/1-738 -ATAEPPTGL RFSPEQVACV CEALLQAGHA GRLSR---FL G--------A ENSTTRP00000013557/1-700 -AAADPLTGL RFSPEQVACV CEALLQAG-A GRLSR---FL G--------A bmy_06570T0/1-715 -AAAEPPTGL RFSPEQVACV CEALLQAGHA GRLSR---FL G--------A 351 400 BACU002121/1-1117 VPPFTPDFEG ATDTCNFDVV EDGLTAMETL SDMQEGMPLG VHLPFVGYSS ENSP00000316842/1-739 LPP------- ---------- ---------- ---------- ---------- ENSBTAP00000017753/1-738 LPP------- ---------- ---------- ---------- ---------- ENSTTRP00000013557/1-700 LPP------- ---------- ---------- ---------- ---------- bmy_06570T0/1-715 LPP------- ---------- ---------- ---------- ---------- 401 450 BACU002121/1-1117 YSCMALGDDE IPGSTPMELE AEALPEPLQE PSLEPMVPPP EETAEAAVPE ENSP00000316842/1-739 -------AER LRGSDPV-LR ARAL------ ---------- ---------- ENSBTAP00000017753/1-738 -------AER LRGSDPV-LR ARAL------ ---------- ---------- ENSTTRP00000013557/1-700 -------AER LRGSDPV-LR ARAL------ ---------- ---------- bmy_06570T0/1-715 -------AER LRGSDPV-LR ARAL------ ---------- ---------- 451 500 BACU002121/1-1117 AIPEVIPEAV AEAEVTLREL QEALEEEVLT RQSLSQELEA IRTANQNFAS ENSP00000316842/1-739 ---------V AFQRGEYAEL YRLLESRP-- ---------- -------FPA ENSBTAP00000017753/1-738 ---------V AFQRGEYAEL YRLLESRP-- ---------- -------FPA ENSTTRP00000013557/1-700 ---------V AFQRGEYAEL YRLLESRP-- ---------- -------FPA bmy_06570T0/1-715 ---------V AFQRGEYAEL YRLLESRP-- ---------- -------FPA 501 550 BACU002121/1-1117 CHGGPQSPGH GSTFPYGPPA VALGQCPLVG PGPMHRRHLL LPARDLYLRA ENSP00000316842/1-739 AH-------- ---------- ---------- -------HAF L--QDLYLRA ENSBTAP00000017753/1-738 AH-------- ---------- ---------- -------HAF L--QDLYLRA ENSTTRP00000013557/1-700 AH-------- ---------- ---------- -------HAF L--QDLYLRA bmy_06570T0/1-715 AH-------- ---------- ---------- -------HAF L--QDLYLRA 551 600 BACU002121/1-1117 RYLEAERARG RALGAVDKYR LRKKFPLPKT IWDGEETVYC FKERSRAALK ENSP00000316842/1-739 RYHEAERARG RALGAVDKYR LRKKFPLPKT IWDGEETVYC FKERSRAALK ENSBTAP00000017753/1-738 RYHEAERARG RALGAVDKYR LRKKFPLPKT IWDGEETVYC FKERSRAALK ENSTTRP00000013557/1-700 RYHEAERARG RALGAVDKYR LRKKFPLPKT IWDGEETVYC FKERSRAALK bmy_06570T0/1-715 RYHEAERARG RALGAVDKYR LRKKFPLPKT IWDGEETVYC FKERSRAALK 601 650 BACU002121/1-1117 ACYRGNRYPT PDEKRRLATL TGLSLTQVSN WFKNRRQRDR TGGGGGAPCK ENSP00000316842/1-739 ACYRGNRYPT PDEKRRLATL TGLSLTQVSN WFKNRRQRDR TGAGGGAPCK ENSBTAP00000017753/1-738 ACYRGNRYPT PDEKRRLATL TGLSLTQVSN WFKNRRQRDR TGGSGGAPCK ENSTTRP00000013557/1-700 ACYRGNRYPT PDEKRRLATL TGLSLTQVSN WFKNRRQRDR TGGGGGAPCK bmy_06570T0/1-715 ACYRGNRYPT PDEKRRLATL TGLSLTQVSN WFKNRRQRDR TGGGSGAPCK 651 700 BACU002121/1-1117 SESDGNPTTE DESSRSPEDL ERGAAPVAAE APAQGSIFLA GAAPPAPCPT ENSP00000316842/1-739 SESDGNPTTE DESSRSPEDL ERGAAPVSAE AAAQGSIFLA GTGPPAPCPA ENSBTAP00000017753/1-738 SESDGNPTTE DESSRSPEDL ERGAAPAAAE GPAPGSIFLA GASPPAPCPA ENSTTRP00000013557/1-700 SESDGNPTTE DESSRSPEDL ERGAAPVAAE APAQGSIFLA GAAPPAPCPA bmy_06570T0/1-715 SESDGNPTTE DESSRSPEDL ERGAAPVAAE APAQGSIFLA GAAPPAPCPA 701 750 BACU002121/1-1117 SSSILVNGSF LAAGSSPAVL LNGSPVIINS LALGEASSLG PLLLGGGGGA ENSP00000316842/1-739 SSSILVNGSF LAASGSPAVL LNGGPVIING LALGEASSLG PLLLTGGGGA ENSBTAP00000017753/1-738 SSSILVNGSF LAAGSSPAVL LNGSPVIINS LALGEASGLG PLLLT--GGA ENSTTRP00000013557/1-700 SSSILVNGSF LAAGSSPAVL LNGSPVIINS LALGEASSLG PLLLGGGGGA bmy_06570T0/1-715 SSSILVNGSF LAAGSSPAVL LNGSPVIINS LALGEASSLG PLLLGGGGGA 751 800 BACU002121/1-1117 PAPQPSPQGA SEGKTSLVLD PQTGEVRLEE AQPEAPETKG AQVAASGPP- ENSP00000316842/1-739 PPPQPSPQGA SETKTSLVLD PQTGEVRLEE AQSEAPETKG AQVAAPGPAL ENSBTAP00000017753/1-738 PAPQPSPQGA SEGKTSLVLD PQTGEVRLEE AQPEAPETKG AQVTASGPS- ENSTTRP00000013557/1-700 PAPQPSPQGA SEGKTSLVLD PQTGEVRLEE AQPEAPETKG AQVAASGPP- bmy_06570T0/1-715 PAPQPSPQGA SEGKTSLVLD PQTGEVRLEE AQPEAPETKG AQVAASGPP- 801 850 BACU002121/1-1117 GEEVPGPLPQ VVPGPPPAAT FPLPPGPVTS VAAPQVVPLS PPPGYPAGLG ENSP00000316842/1-739 GEEVLGPLAQ VVPGPPTAAT FPLPPGPVPA VAAPQVVPLS PPPGYPTGLS ENSBTAP00000017753/1-738 GEEVPTPLPQ VVPGPSTAAT FPLPPGPVTS MAAPQVVPLS PPPGYPAGLG ENSTTRP00000013557/1-700 GEEVPGPLPQ VVPGPPPAAT FPLPPGPVTS VAAPQVVPLS PPPGYPAGLG bmy_06570T0/1-715 GEEVPGPLPQ VVPGPPPAAT FPLPPGPVTS VAAPQVVPLS PPPGYPAGLG 851 900 BACU002121/1-1117 PTSPLLNLPQ VVPTSQVVTL PQAVGPLQLL AAGPGSPVKV AAAPGPANVH ENSP00000316842/1-739 PTSPLLNLPQ VVPTSQVVTL PQAVGPLQLL AAGPGSPVKV AAAAGPANVH ENSBTAP00000017753/1-738 PTSPLLNLPQ VVPTSQVVTL PQAVGPLQLL AAGPGSPVKV AGASGPANVH ENSTTRP00000013557/1-700 PTSPLLNLPQ VVPTSQVVTL PQAVGPLQLL AAGPGSPVKV AAAPGPANVH bmy_06570T0/1-715 PTSPLLNLPQ VVPTSQVVTL PQAVGPLQLL AAGPGSPVKV AAAPGPANVH 901 950 BACU002121/1-1117 LINSGVGVTA LQLPSATAPG NFLLANPVSG SPIVTGVAVQ QGKIILTATF ENSP00000316842/1-739 LINSGVGVTA LQLPSATAPG NFLLANPVSG SPIVTGVALQ QGKIILTATF ENSBTAP00000017753/1-738 LINSSVGVTA LQLPSATTPG NFLLANPVSG SPIVTGVAVQ QGKIILTATF ENSTTRP00000013557/1-700 LINSGVGVTA LQLPSATAPG NFLLANPVSG SPIVTGVAVQ QGKIILTATF bmy_06570T0/1-715 LINSGVGVTA LQLPSATAPG NFLLANPVSG SPIVTGVAVQ QGKIILTATF 951 1000 BACU002121/1-1117 PTSMLVSQVL SP----APSL ALPLKPDAAI SVPEGALPVA PSPALPEAHA ENSP00000316842/1-739 PTSMLVSQVL PP----APGL ALPLKPETAI SVPEGGLPVA PSPALPEAHA ENSBTAP00000017753/1-738 PTSMLVSQVL PP----APSL ALPLKPDTAI SVPEGALPVA TSPALPEAHA ENSTTRP00000013557/1-700 PTSMLVSQVL SP----APSL ALPLKPDAAI SVPEGALPVA PSPALPEAHA bmy_06570T0/1-715 PTSMLVSQVL SPAPSLAPSL ALPLKPDAAI SVPEGALPVA PSPALPEAHA 1001 1050 BACU002121/1-1117 LGALSA---- QPPPAPAAA- --SLPFSPDS SGLLPGFQAP PPEGLLLSPA ENSP00000316842/1-739 LGTLSAQ--- QPPPAAATTS STSLPFSPDS PGLLPNFPAP PPEGLMLSPA ENSBTAP00000017753/1-738 LGALPAQQQP QPPPTPTASA P-SLPFSPDS SGLLPSFPAP PPEGLLLSPA ENSTTRP00000013557/1-700 LGALSA---- QPPPAPAAA- --SLPFSPDS SGFLPGFQAP PPEGLLLSPA bmy_06570T0/1-715 LGALSA---- QPPPAPAAT- --SLPFSPDS SGLLPGFQAP PPEGLLLSPA 1051 1100 BACU002121/1-1117 AVPIWPAGLE LSAGTEGLLE AEKGLGTQAP HTVLRLPDPD PEGLLLGATA ENSP00000316842/1-739 AVPVWSAGLE LSAGTEGLLE AEKGLGTQAP HTVLRLPDPD PEGLLLGATA ENSBTAP00000017753/1-738 AVPIWPAGLE LSAGTEGLLE EEKGLGTQAP HTVLRLPDPD PEGLLLGATA ENSTTRP00000013557/1-700 AVPIWPAGLE LSAGTEGLLE AEKGLGTQAP HTVLRLPDPD PEGLLLGATA bmy_06570T0/1-715 AVPIWPAGLE LSAGTEGLLE AEKGLGTQAP HTVLRLPDPD PEGLLLGATA 1101 1150 BACU002121/1-1117 GGEVDEGLEA ETKVLTQLQS VPVEEPLEL ENSP00000316842/1-739 GGEVDEGLEA EAKVLTQLQS VPVEEPLEL ENSBTAP00000017753/1-738 GGEVDEGLEA ETKVLTQLQS VPVEEPLEL ENSTTRP00000013557/1-700 GGEVDEGLEV ETKVLTQLQS VPVEEPLEL bmy_06570T0/1-715 GGEVDEGLEA ETKVLTQLQS VPVEEPLEL