KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:02:43 2014 Check: 00 .. Name: ENSTTRP00000000999/1-674 Len: 675 Check: 9721 Weight: 1.00 Name: ENSP00000380982/1-648 Len: 675 Check: 4639 Weight: 1.00 Name: ENSBTAP00000017765/1-647 Len: 675 Check: 607 Weight: 1.00 Name: bmy_16397T0/1-490 Len: 675 Check: 7471 Weight: 1.00 Name: BACU009465/1-647 Len: 675 Check: 2622 Weight: 1.00 // 1 50 ENSTTRP00000000999/1-674 KGKGDGAGQS EEAEAVAAAA TRVRVAIMEV KGKKKITGKG TKPSQEKNRF ENSP00000380982/1-648 ---------- ---------- -------MEV KGKKQFTGKS TKTAQEKNRF ENSBTAP00000017765/1-647 ---------- ---------- -------MEV KGKKKLTGKG TKMSQEKSKF bmy_16397T0/1-490 ---------- ---------- ---------- ---------- ---------- BACU009465/1-647 ---------- ---------- -------MEV KGKKKIAGKG TKPSQEKNRF 51 100 ENSTTRP00000000999/1-674 RENSDSGSSK TFP-KKVVKE GGPKITTKNF EKTATKPGKK GVKQFKNKQQ ENSP00000380982/1-648 HKNSDSGSSK TFPTRKVAKE GGPKVTSRNF EKSITKLGKK GVKQFKNKQQ ENSBTAP00000017765/1-647 HKNNDSGSSK TFP-KKVVKE GGPKITSKNF EKTATKPGKK GVKQFKNKQQ bmy_16397T0/1-490 ---------- ---------- ---------- ---------- ---------- BACU009465/1-647 HKNSDSGSSK TFP-KKVVKE GGPKITSKNF EKTATKPGKK GVKQFKNKQQ 101 150 ENSTTRP00000000999/1-674 GDKIPKNKFQ QADKFNRKRK FQPDSKNDDT AVKKPKWDEF KKKKKELKQS ENSP00000380982/1-648 GDKSPKNKFQ PANKFNKKRK FQPDGRSDES AAKKPKWDDF KKKKKELKQS ENSBTAP00000017765/1-647 GDRIPKNKFQ QANKFNQKRK FQPDSKSDES AAKKPKWDEF KKKKKELKQS bmy_16397T0/1-490 ---------- ---------- ---------- ---------- ---------- BACU009465/1-647 GDKIPKNKFQ QADKFNRKRK FQPDSKNDDT AAKKPKWDEF KKKKKELKQS 151 200 ENSTTRP00000000999/1-674 RQLSDKTNYD IVVRAKQIWE ILRRKDCDKE KRVKLMNDLQ KLIQGKIKTX ENSP00000380982/1-648 RQLSDKTNYD IVVRAKQMWE ILRRKDCDKE KRVKLMSDLQ KLIQGKIKTI ENSBTAP00000017765/1-647 RQLSDKTNYD IVIRAKQIWE ILRRKDCDKE KRVKLMSDLQ KLIQGKIKTI bmy_16397T0/1-490 ---------- ---------- ---------- -----MCDLQ KLIQGKIKTI BACU009465/1-647 RQLSDKTNYD VVVRAKQIWE ILRRKDCDKE KRVKLMSDMQ KLIQGKIKTI 201 250 ENSTTRP00000000999/1-674 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000380982/1-648 AFAHDSTRVI QCYIQYGNEE QRKQAFEELR DDLVELSKAK YSRNIVKKFL ENSBTAP00000017765/1-647 AFAHDSTRVI QCYIQFGNEE QRKQAFEELR GDLVELSKAK YSRNIVKKFL bmy_16397T0/1-490 AFAHDSTRVI QCYIQYGNEE QRKQAFEELR GDLVELSKAK YSRNIVKKFL BACU009465/1-647 AFAHDSTRVI QCYIQYGNEE QRKQAFEELR GDLVELSKAK YSRNIVKKFL 251 300 ENSTTRP00000000999/1-674 XXXSKAQIAE IMRSFKGHVR KMLRHAEASA IVEYAYNDKA ILEQRNMLTE ENSP00000380982/1-648 MYGSKPQIAE IIRSFKGHVR KMLRHAEASA IVEYAYNDKA ILEQRNMLTE ENSBTAP00000017765/1-647 MYGSKAQIAE IIRSFKGHVR KLLRHAEASA IVEYAYNDKA ILEQRNMLTE bmy_16397T0/1-490 MYGNKAQIAE IMRSFKGHVR KMLRHAEASA IVEYAYNDKA ILEQRNMLTE BACU009465/1-647 MYGNKAQITE IMRSFKGHVR KMLRHAEASA IVEYAYNDKA ILEQRNMLTE 301 350 ENSTTRP00000000999/1-674 ELYGNTFQLY KSADHPTLDK VLEVQPEKLE LIMDEMKQIL TPMAQKEAVI ENSP00000380982/1-648 ELYGNTFQLY KSADHRTLDK VLEVQPEKLE LIMDEMKQIL TPMAQKEAVI ENSBTAP00000017765/1-647 ELYGNTFQLY KSADHPTLDK VLEVQPEKLE LIMDEMKQIL TPMAQKEAVI bmy_16397T0/1-490 ELYGNTFQLY KSADHPTLDK VLKVQPEKLE LIMDEMKQIL TPMAQKEAVI BACU009465/1-647 ELYGNTFQLY KSADHPTLDK VLKVQPEKLE LIMDEMKQIL TPMAQKEAVI 351 400 ENSTTRP00000000999/1-674 KHSLVHKVFL DFFTYAPPKL RSEVIEAIRE AVVYLAHTHD GARVAMHCLW ENSP00000380982/1-648 KHSLVHKVFL DFFTYAPPKL RSEMIEAIRE AVVYLAHTHD GARVAMHCLW ENSBTAP00000017765/1-647 KHSLVHKVFL DFFTYAPPKL RSEMIEAIRE AVVYLAHTHD GARVAMYCLW bmy_16397T0/1-490 KHSLVHKVFL DFFTYAPPKL RSEMIEAIRE AVVYLAHTHD GARVAMHCLW BACU009465/1-647 KHSLVHKVFL DFFTYAPPKL RSEMIEAIRE AVVYLAHTRD GARVAMHCLW 401 450 ENSTTRP00000000999/1-674 HGTPKDRKVI VKTMKTYVEK VANGQYSHLV LLAAFDCIDD TKLVKQIIIS ENSP00000380982/1-648 HGTPKDRKVI VKTMKTYVEK VANGQYSHLV LLAAFDCIDD TKLVKQIIIS ENSBTAP00000017765/1-647 HGTPKDRKVI VKTMKTYIEK VANGQYSHLV LLAAFDCIDD TKLVKQIIIS bmy_16397T0/1-490 HGTPKDRKVI VKTMKTYVEK VANGQYSHLV LLAAFDCIDD TKLVRQIIIS BACU009465/1-647 HGTPKDRKVI VKTMKTYVEK VANGQYSHLV LLAAFDCIDD TKLVRQIIIS 451 500 ENSTTRP00000000999/1-674 EIINSLPNIV NDKYGRKVLL YLLSPRDPAH TVREIIEVLQ KGDGNAHSKK ENSP00000380982/1-648 EIISSLPSIV NDKYGRKVLL YLLSPRDPAH TVREIIEVLQ KGDGNAHSKK ENSBTAP00000017765/1-647 EIINSLPNIV NDKYGRKVLL YLLSPRDPAH TVREIIEVLQ KGDGNAHSKK bmy_16397T0/1-490 EIINSLPNIV NDKYGRKVLL YLLSPRDPAH TVREIIEVLQ KGDGNAHSKK BACU009465/1-647 ELINSLPNIV NDKYGRKVLL YLLSPRDPAH TVREIIEVLQ KGDGNAHSKK 501 550 ENSTTRP00000000999/1-674 DTEIRQRELL ESISPALLSY LQGHAQEVVL DKSACVLVAD ILGAAIGDVQ ENSP00000380982/1-648 DTEVRRRELL ESISPALLSY LQEHAQEVVL DKSACVLVSD ILGSATGDVQ ENSBTAP00000017765/1-647 DTEIRRRELL ESISPALLSY LQGHAQEVVL DKSACVLVAD ILGTATGDVQ bmy_16397T0/1-490 DTEIRQRELL ESISPALLSY LQGHAQEVVL DKSACVLVAD ILGAAIGDVQ BACU009465/1-647 DTEIRQRELL ESISPALLSY LQGHAQEVVL DKSACVLVAD ILGAAIGDVQ 551 600 ENSTTRP00000000999/1-674 PAMNAVASLA AAELHPGGKD GELHVAEHPA GHLVLKWLIE QDRKMKESGR ENSP00000380982/1-648 PTMNAIASLA ATGLHPGGKD GELHIAEHPA GHLVLKWLIE QDKKMKENGR ENSBTAP00000017765/1-647 PAMDAVASLA AAELHPGGKD GELHIAEHPA GHLVLKWLIE QDKKMKERGR bmy_16397T0/1-490 PAMNAVASLA AAELHPGGKD GELHVAEHPA GHLVLKWLIE QDKKMKESGR BACU009465/1-647 PAMNAVASLA AAELHPGGKD GELHVAEHPA GHLVLKWLIE QDKKMKESGR 601 650 ENSTTRP00000000999/1-674 EGCFAKTLVE LVGMKNLKSW ASVNRGAIIL SSLLQSSDQD VANKVKAGLK ENSP00000380982/1-648 EGCFAKTLVE HVGMKNLKSW ASVNRGAIIL SSLLQSCDLE VANKVKAALK ENSBTAP00000017765/1-647 EGCFAKTLIE RVGVKNLKSW ASVNRGAIIL SSLLQSSDQE VANKVKAGLK bmy_16397T0/1-490 EGCFAKTLVE LVGMKNLKSW ASVNRGAIIL SSLLQSSDQD VANKVKAGLK BACU009465/1-647 EGCFAKTLVE LVGMKNLKSW ASVNRGAIIL SSLLQSSDQD VANKVKSGLK 651 700 ENSTTRP00000000999/1-674 SLIPTLEKSK NTSKGIEMLL EKLTA ENSP00000380982/1-648 SLIPTLEKTK STSKGIEILL EKLST ENSBTAP00000017765/1-647 SLIPALEKSK NTSKGIEMLL EKLTA bmy_16397T0/1-490 SLIPTLEKNK NTSKGIEMLL EKLTA BACU009465/1-647 SLIPTLEKNK NTSKGIEMLL EKLTA