KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 17:02:43 2014 Check: 00 .. Name: bmy_08489T0/1-360 Len: 412 Check: 8801 Weight: 1.00 Name: ENSTTRP00000003806/1-392 Len: 412 Check: 114 Weight: 1.00 Name: ENSBTAP00000017773/1-407 Len: 412 Check: 3494 Weight: 1.00 Name: ENSP00000383900/1-399 Len: 412 Check: 9816 Weight: 1.00 // 1 50 bmy_08489T0/1-360 ---------- MWQLLTATCW MLLLGPKYGS QNEGSSTNPE ANMNISQLLS ENSTTRP00000003806/1-392 ---------- MWQLLTATCW MLLLGPIYGS QNEGSSTNPE ANMNISQIIS ENSBTAP00000017773/1-407 LIFPFTGRFQ MWQLLAATCW MLLLGPVFGY HKKGCTTNPE ATMNISQIIS ENSP00000383900/1-399 ---------- MWQLLAAACW MLLLGSMYGY DKKGNNANPE ANMNISQIIS 51 100 bmy_08489T0/1-360 YWGYPYEKYD VVTKDGYILG IYRIPHGRAC PK---TAAKP AVYLQHGLIA ENSTTRP00000003806/1-392 YWGYPYEKYD IVTKDGYILG IYRIPHGRAC PR---TAAKP AVYLQHGLIA ENSBTAP00000017773/1-407 YWGYPYEIYD VVTEDGYILG TYRIPHGRKI KKKINTPPKP VVYLQHGLVA ENSP00000383900/1-399 YWGYPYEEYD VTTKDGYILG IYRIPHGRGC PGR--TAPKP AVYLQHGLIA 101 150 bmy_08489T0/1-360 SASNWICNLP NNSLAFLLVD AGYDVWMGNS WGNTWSRRHV KLSTTSPEYW ENSTTRP00000003806/1-392 SASNWICNLP NNSLAFLLAD VCYDVWMGNS RGNIWSRRHV KLSTTSREYW ENSBTAP00000017773/1-407 SASNWICNLP NNSLAFLLAD VGYDVWLGNS RGNTWSRKHL KFSPKSPEYW ENSP00000383900/1-399 SASNWICNLP NNSLAFLLAD SGYDVWLGNS RGNTWSRKHL KLSPKSPEYW 151 200 bmy_08489T0/1-360 AFSLDEMAKY DLPATINFII EKTG-QERLY YVGHSQGTTT AFIAFSTNPK ENSTTRP00000003806/1-392 AFSLDEMAKY DLPATINFII EKTGXXXXXX XXXXXXXXXX XFIAFSTNPE ENSBTAP00000017773/1-407 AFSLDEMAKY DLPATINFII EKTR-QEQLY YVGHSQGTTI AFIAFSTNPE ENSP00000383900/1-399 AFSLDEMAKY DLPATINFII EKTG-QKRLY YVGHSQGTTI AFIAFSTNPE 201 250 bmy_08489T0/1-360 LAKRIKIFFA LAPVTTVKYT QSPMKKLTTL SRKVIKMLFG DKIFYAHTFF ENSTTRP00000003806/1-392 LAKRIKIFFA LAPVTTVKYT QTPIKKLTTL SRKVIKMLFG DKMFYPHILF ENSBTAP00000017773/1-407 LAKRIKIFFA LAPVTTLKYT QSPMKKLTNL SRKAVKVLFG DKMFSPHTFF ENSP00000383900/1-399 LAKKIKIFFA LAPVVTVKYT QSPMKKLTTL SRRVVKVLFG DKMFHPHTLF 251 300 bmy_08489T0/1-360 DQFTATKVCK QKIFHHICSN FLFTWSGYDP KNLNM----- ---------- ENSTTRP00000003806/1-392 DRFIATKVCN QKIFHHICSN FLFTWSGFDP KNLNMS---- ---QSPAGTS ENSBTAP00000017773/1-407 EQFIATKVCN RKIFRRICSN FIFTLSGFDP KNLNMSRLDV YFAQSSAGTS ENSP00000383900/1-399 DQFIATKVCN RKLFRRICSN FLFTLSGFDP QNLNMSRLDV YLSHNPAGTS 301 350 bmy_08489T0/1-360 -------VRA VTSGQFQAFN WGNPDQNMMH FHQLTPPLYN VSKMEVPTAV ENSTTRP00000003806/1-392 VQNMLHWAQA INSGQFQAFD WGNPDQNMRH FHQRTPPLYN VSKMEVPTAV ENSBTAP00000017773/1-407 VQTMLHWAQA VNSGRFQAFD WGNPDQNMKH FHQLTPPLYN VSNMEVPTAV ENSP00000383900/1-399 VQNMLHWAQA VNSGQLQAFD WGNSDQNMMH FHQLTPPLYN ITKMEVPTAI 351 400 bmy_08489T0/1-360 WSGGQDPVAD LKDVENLLPK ITRLIYFKLI PHYNHVDFYL GQDAPY---- ENSTTRP00000003806/1-392 WSGGQDPVAD LKDVENLLPK ITRLIYFKLI PHYNHVDFYL GQDAPYEVYQ ENSBTAP00000017773/1-407 WSGGQDYVAD LKDVENLLPT IPKLIYYKSI PHYNHVDFYL GQDAPLEIYQ ENSP00000383900/1-399 WNGGQDIVAD PKDVENLLPQ IANLIYYKLI PHYNHVDFYL GEDAPQEIYQ 401 450 bmy_08489T0/1-360 ---------- -- ENSTTRP00000003806/1-392 DLIRLMEECL QN ENSBTAP00000017773/1-407 DLIRMMEE-- -- ENSP00000383900/1-399 DLIILMEEYL QN