KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:02:44 2014 Check: 00 .. Name: ENSP00000383901/1-423 Len: 1395 Check: 103 Weight: 1.00 Name: ENSBTAP00000017778/1-405 Len: 1395 Check: 7963 Weight: 1.00 Name: BACU007895/1-1361 Len: 1395 Check: 3072 Weight: 1.00 Name: ENSTTRP00000003820/1-421 Len: 1395 Check: 1588 Weight: 1.00 Name: bmy_08487T0/1-441 Len: 1395 Check: 7903 Weight: 1.00 // 1 50 ENSP00000383901/1-423 ---------- ---------- -------MLE TLSRQWIV-- ---------- ENSBTAP00000017778/1-405 ---------- ---------- ---------- ---MDFVL-- ---------- BACU007895/1-1361 MISAEDQRTL AFPLVRGPGA GFQDRLAPSD KLSQMWYLFK VMSFILILGT ENSTTRP00000003820/1-421 ---------- ---------- -------MSK ILSREWIV-- ---------- bmy_08487T0/1-441 ---------- ---------- -------MSK ILSREWIV-- ---------- 51 100 ENSP00000383901/1-423 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000017778/1-405 ---------- ---------- ---------- ---------- ---------- BACU007895/1-1361 THGAFKNRRS VNPEANMNIS QIISYWGYPD EEYDITTEDG YILGLYRIPY ENSTTRP00000003820/1-421 ---------- ---------- ---------- ---------- ---------- bmy_08487T0/1-441 ---------- ---------- ---------- ---------- ---------- 101 150 ENSP00000383901/1-423 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000017778/1-405 ---------- ---------- ---------- ---------- ---------- BACU007895/1-1361 GKTKNDNNSG QEKCLKISFD EMAKYDLPAS IDFIVKQTQQ EQIFYVGHSQ ENSTTRP00000003820/1-421 ---------- ---------- ---------- ---------- ---------- bmy_08487T0/1-441 ---------- ---------- ---------- ---------- ---------- 151 200 ENSP00000383901/1-423 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000017778/1-405 ---------- ---------- ---------- ---------- ---------- BACU007895/1-1361 GTTMAFITFS TIPKIAERIK IFFALAPIFS IKYSESPLIK MAYNWKSVIK ENSTTRP00000003820/1-421 ---------- ---------- ---------- ---------- ---------- bmy_08487T0/1-441 ---------- ---------- ---------- ---------- ---------- 201 250 ENSP00000383901/1-423 ---------- ---------- ---------- -SHRMEM--- ---------- ENSBTAP00000017778/1-405 ---------- ---------- ---------- ---RNEM--- ---------- BACU007895/1-1361 LFNSSHLKAF DWSSPVLNFV HFNQSQMISY WGYRSEMHEV ITADGYVLQV ENSTTRP00000003820/1-421 ---------- ---------- ---------- -SHRNEM--- ---------- bmy_08487T0/1-441 ---------- ---------- ---------- -SHRNEM--- ---------- 251 300 ENSP00000383901/1-423 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000017778/1-405 ---------- ---------- ---------- ---------- ---------- BACU007895/1-1361 YRIPHGKNDA NHLGQRPVVL LQHGFLASAT NWISNLPSNS LGFLLADAGY ENSTTRP00000003820/1-421 ---------- ---------- ---------- ---------- ---------- bmy_08487T0/1-441 ---------- ---------- ---------- ---------- ---------- 301 350 ENSP00000383901/1-423 --WL------ ---------- ---------- ---------- ---------- ENSBTAP00000017778/1-405 --WL------ ---------- ---------- ---------- ---------- BACU007895/1-1361 DVWLGNSRGN TWARTNLFYS PDSAEFWAFS FDEMATYDLP STINFILNKT ENSTTRP00000003820/1-421 --WL------ ---------- ---------- ---------- ---------- bmy_08487T0/1-441 --CL------ ---------- ---------- ---------- ---------- 351 400 ENSP00000383901/1-423 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000017778/1-405 ---------- ---------- ---------- ---------- ---------- BACU007895/1-1361 GQKKLHYVGH SQGTTIGFIA FSTNPTLAQK IKAFYALAPV ATVKYTKSQL ENSTTRP00000003820/1-421 ---------- ---------- ---------- ---------- ---------- bmy_08487T0/1-441 ---------- ---------- ---------- ---------- ---------- 401 450 ENSP00000383901/1-423 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000017778/1-405 ---------- ---------- ---------- ---------- ---------- BACU007895/1-1361 NKLALIPPFL FKAVNSGQFQ GFDWGTPTQN LLHYNQATPP NYNLTAMDVP ENSTTRP00000003820/1-421 ---------- ---------- ---------- ---------- ---------- bmy_08487T0/1-441 ---------- ---------- ---------- ---------- ---------- 451 500 ENSP00000383901/1-423 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000017778/1-405 ---------- ---------- ---------- ---------- ---------- BACU007895/1-1361 IASQLISYWG YLYEKYDVVT KDGYILGIYR IPHGRAYPRT AAKPAVYLQH ENSTTRP00000003820/1-421 ---------- ---------- ---------- ---------- ---------- bmy_08487T0/1-441 ---------- ---------- ---------- ---------- ---------- 501 550 ENSP00000383901/1-423 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000017778/1-405 ---------- ---------- ---------- ---------- ---------- BACU007895/1-1361 GLTASASNWI CNLPNNSLAF LLADAGYDVW MGNSWGNTWS RRHMKLSTMS ENSTTRP00000003820/1-421 ---------- ---------- ---------- ---------- ---------- bmy_08487T0/1-441 ---------- ---------- ---------- ---------- ---------- 551 600 ENSP00000383901/1-423 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000017778/1-405 ---------- ---------- ---------- ---------- ---------- BACU007895/1-1361 PEYRAFSLDE MAKYDLPATI NFIIEKTGQE RLYYVGHSQG TTTAFIAFST ENSTTRP00000003820/1-421 ---------- ---------- ---------- ---------- ---------- bmy_08487T0/1-441 ---------- ---------- ---------- ---------- ---------- 601 650 ENSP00000383901/1-423 ---------- ---------- ---------- ---------- ----LILVAY ENSBTAP00000017778/1-405 ---------- ---------- ---------- ---------- ----LILVAH BACU007895/1-1361 NPELAKRIKI FFALAPVTTV KYTQSPMKKL TTLSRKIIKM LFGDKVFYAH ENSTTRP00000003820/1-421 ---------- ---------- ---------- ---------- ----LILVAH bmy_08487T0/1-441 ---------- ---------- ---------- ---------- ----LILMAH 651 700 ENSP00000383901/1-423 MF-------- ---------- ---------- ---------- ---------- ENSBTAP00000017778/1-405 LF-------- ---------- ---------- ---------- ---------- BACU007895/1-1361 TFFDQFITTK VCKQKIFHHI CSNFLFTWSG YDPKNLNMVH SRLDVYLSQS ENSTTRP00000003820/1-421 LF-------- ---------- ---------- ---------- ---------- bmy_08487T0/1-441 LF-------- ---------- ---------- ---------- ---------- 701 750 ENSP00000383901/1-423 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000017778/1-405 ---------- ---------- ---------- ---------- ---------- BACU007895/1-1361 PEGTSVQNML HWAQAVNSGQ FQAFDWGNPD QNMMHFHQSE IITYNGYPSE ENSTTRP00000003820/1-421 ---------- ---------- ---------- ---------- ---------- bmy_08487T0/1-441 ---------- ---------- ---------- ---------- ---------- 751 800 ENSP00000383901/1-423 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000017778/1-405 ---------- ---------- ---------- ---------- ---------- BACU007895/1-1361 EYKVTTQDGY ILSVNRIPHG RRDTRSTGAQ PVVYLQHALF ADSASWLQNY ENSTTRP00000003820/1-421 ---------- ---------- ---------- ---------- ---------- bmy_08487T0/1-441 ---------- ---------- ---------- ---------- ---------- 801 850 ENSP00000383901/1-423 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000017778/1-405 ---------- ---------- ---------- ---------- ---------- BACU007895/1-1361 ANGSLGFLLA DAGYDVWMGN SRGNTWSRRH KTLSVNEEEF WAFSFDEMAK ENSTTRP00000003820/1-421 ---------- ---------- ---------- ---------- ---------- bmy_08487T0/1-441 ---------- ---------- ---------- ---------- ---------- 851 900 ENSP00000383901/1-423 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000017778/1-405 ---------- ---------- ---------- ---------- ---------- BACU007895/1-1361 YDLPGIIDFI VNETGQEKLY FIGHSLGTTI GFAAFATMPE LAQRIKMNFA ENSTTRP00000003820/1-421 ---------- ---------- ---------- ---------- ---------- bmy_08487T0/1-441 ---------- ---------- ---------- ---------- ---------- 901 950 ENSP00000383901/1-423 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000017778/1-405 ---------- ---------- ---------- ---------- ---------- BACU007895/1-1361 LSPVISLKYP TGIFTSFFLL SSSSVKSRMD VYMSHSPTGS SIQNILHIKQ ENSTTRP00000003820/1-421 ---------- ---------- ---------- ---------- ---------- bmy_08487T0/1-441 ---------- ---------- ---------- ---------- ---------- 951 1000 ENSP00000383901/1-423 ---------- ---------- ---QRNVNSV HMPTKAVDPE AFMNISEIIQ ENSBTAP00000017778/1-405 ---------- ---------- ---QRNVNSG HMRTTTVDPE AFMNISEIIQ BACU007895/1-1361 LYRSDEFRAY DWGSEAENMH HYNQRNVNSG HMPTKAVDPE AFMNISEIIQ ENSTTRP00000003820/1-421 ---------- ---------- ---QRNVNSG HMPTKAVDPE AFMNVSEIIQ bmy_08487T0/1-441 ---------- ---------- ---QRNVNSG HMPTKAVDPE AFMNISEIIQ 1001 1050 ENSP00000383901/1-423 HQGYPCEEYE VATEDGYILS VNRIPRGLVQ PKKTGSRPVV LLQHGLVGGA ENSBTAP00000017778/1-405 HKRYPCEEYE VLTEDGYILS VNRIPQGLVQ LKKTGPRPVV LLQHGLLGDA BACU007895/1-1361 HKGYPCEEYE VPTEDGYILS VNRIPHGLVQ LKKTGPRPVV LLQHGLLGDA ENSTTRP00000003820/1-421 HKGYPCEEYE VATEDGYILS VNRIPQGLVQ LKKTGPRPVV LLQHGLLGDA bmy_08487T0/1-441 HKGYPCEEYE VPTEDGYILS VNRIPQGLVQ LKKTDPRPVV LLQHGLLGDA 1051 1100 ENSP00000383901/1-423 SNWISNLPNN SLGFILADAG FDVWMGNSRG NAWSRKHKTL SIDQDEFWAF ENSBTAP00000017778/1-405 SNWISNLPNN SLGFILADAG FDVWLGNSRG NTWSRKHKTL SIDQDEFWAF BACU007895/1-1361 SNWISNLPNN SLGFILADAG FDVWLGNSRG NTWSQKHKTL SIDQDEFWAF ENSTTRP00000003820/1-421 SSWISNLPNN SLGFILADAG FDVWLGNSRG NTWSRKHKTL SIDQDEFWAF bmy_08487T0/1-441 SNWISNLPNN SLGFILADAG FDVWLGNSRG NTWSQKHKTL SIDQDEFWAF 1101 1150 ENSP00000383901/1-423 SYDEMARFDL PAVINFILQK TGQEKIYYVG YSQGTTMGFI AFSTMPELAQ ENSBTAP00000017778/1-405 SYDEMARFDL PAVINFILQK TGQEKIYYVG YSQGTTMGFI AFSTMPELAQ BACU007895/1-1361 SYDEMARFDL PAVINFILQK TGQEKIYYIG YSQGTTMGFI AFSTMPELAQ ENSTTRP00000003820/1-421 SYDEMARFDL PAVIDFILQK TGQENIYYVG YSQGTTMGFI AFSTMPELAQ bmy_08487T0/1-441 SYDEMARFDL PAVINFILQK TGQEKIYYIG YSQGTTMGFI AFSTMPELAQ 1151 1200 ENSP00000383901/1-423 KIKMYFALAP IATVKHAKSP GTKFLLLPDM MIKGLFGKKE FLYQTRFLRQ ENSBTAP00000017778/1-405 KIKMYFALAP IATIKYAKSP GTKFLLLPDM MIKGLFGKRE FLYQTRFLRQ BACU007895/1-1361 KIRMYFALAP IATVKHAKSP GTKFLLLPDV MIKGLFGKKE FLYQTRFLRQ ENSTTRP00000003820/1-421 KIRMYFALAP IATVKHAKSP GAKFLLLPDV MIKGLFGKKE FLYQTRFLRL bmy_08487T0/1-441 KIRMYFALAP IATVKHAKSP GTKFLLLPDV MIKGLFGKKE FLYQTRFLRQ 1201 1250 ENSP00000383901/1-423 LVIYLCGQVI LDQICSNIML LLGGFNTNNM NM-------- ---------- ENSBTAP00000017778/1-405 FVVYLCSQVI MDQICSNIML LLGGFNPKNM NM-------- ---------- BACU007895/1-1361 FVTYLCGQVI IDQICSHVML LLGGFNTNNM NM-------- ---------- ENSTTRP00000003820/1-421 FVIYLCGQVI IDQICSNIML LLGGFNTNNM NM-------- ---------- bmy_08487T0/1-441 FVIYLCGQVI MDQICSNIML LLGGFNTKNM NMPGDLVLTK CTSCEFFHVP 1251 1300 ENSP00000383901/1-423 --------SR ASVYAAHTLA GTSVQNILHW SQAVNSGELR AFDWGSETKN ENSBTAP00000017778/1-405 --------SR ANVYVAHTPS GTSVQNILHW SQAANSGELR AFDWGSETKN BACU007895/1-1361 --------SR ANVYVAHTLA GTSVQNILHW SQAVNSGELQ AFDWGSETQN ENSTTRP00000003820/1-421 --------SR ANVYVAHTPA GTSVQNILHW SQAVNSGELQ AFDWGSETKN bmy_08487T0/1-441 LTTHALLQSR ANVYVAHTPA GTSVQNILHW SQAVNSGELR AFDWGSETQN 1301 1350 ENSP00000383901/1-423 LEKCNQPTPV RYRVRDMTVP TAMWTGGQDW LSNPEDVKML LSEVTNLIYH ENSBTAP00000017778/1-405 LEKGNQPTPV RYKVRDMTVP TAIWTGGQDW LSNPDDVRTL LSEVTNLIYH BACU007895/1-1361 LEKGNQPAPV RYKVRDMTVP TAMWTGGQDW LSNPADVRIL LSEVTNIIYH ENSTTRP00000003820/1-421 LEKGNQTAPA RYKVRDMTVP TAMWTGGQDW LSNPEDVRIL LSEATNIIYH bmy_08487T0/1-441 LEKGNQPAPV RYKVRDMTVP TAMWTGGQDW LSNPEDVRIL LSEVTNIIYH 1351 1400 ENSP00000383901/1-423 KNIPEWAHVD FIWGLDAPHR MYNEIIHLMQ QEETNLSQGR CEAVL ENSBTAP00000017778/1-405 KNIPEWAHVD FIWGLDAPHR MYNEIIHLMK QEDTS----- ----- BACU007895/1-1361 KNIPEWAHVD FIWGLDAPYR MYNEIIHLMK QEETSIS--- ----- ENSTTRP00000003820/1-421 KNIPEWAHVD FIWGLDAPHR MYNEIIRLMK QEETSIS--G CQVSL bmy_08487T0/1-441 KNIPEWAHVD FIWGLDAPHR MYNEIIHLMK QEETSIS--- -----