KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:02:45 2014 Check: 00 .. Name: ENSP00000396935/1-662 Len: 728 Check: 6753 Weight: 1.00 Name: ENSBTAP00000017794/1-663 Len: 728 Check: 5838 Weight: 1.00 Name: ENSTTRP00000003391/1-627 Len: 728 Check: 4319 Weight: 1.00 Name: bmy_21133T0/1-437 Len: 728 Check: 1655 Weight: 1.00 Name: BACU012190/1-727 Len: 728 Check: 7411 Weight: 1.00 // 1 50 ENSP00000396935/1-662 MVSQSTVRQD SPVEPWEGIS DHSGIIDGSP RLLNTDHPPC QLDIRLMRHK ENSBTAP00000017794/1-663 MVSQSSGRQD SPVDPWEGVS DDPGNTDGLP SLLDTEHPFC PSDIRFTRHR ENSTTRP00000003391/1-627 MVSQSAGRQD SPVDPCEGIS NDPGDIDGSP SLLDTDHLSC ASDIRFTRHR bmy_21133T0/1-437 MVSQSAGRQD SPVDPWEGIS NDPGDIDGSP SLLDTDHPSC ASDIRFTRHR BACU012190/1-727 MVSQSAGRQD SPVDPWEGIS NDPGDIDGSP GLLDTDHPSC ASNIRFTRHR 51 100 ENSP00000396935/1-662 AVWINPQDVQ QQPQDLQSQV PAAGNSGTHF VTDAASPSGP SPSCLGDSLA ENSBTAP00000017794/1-663 AAWINPPCAQ QQLQDASPQV LAVGNRESHT ASNTKSPLGT SPLSLGDSVV ENSTTRP00000003391/1-627 AAWINPQCVQ QQLQDSPPQV PAVGNRESRV AWDAASPLGP SPLSLGDSVV bmy_21133T0/1-437 AAWINPQCVQ QQVQDSPPQV PAVGNRESRA ARDAASPLGP SPLPLGDSVA BACU012190/1-727 AAWINPQCVQ QQVQDSPPQV PAVGSRESCA AWDAASPLGP SPLPLGDSVA 101 150 ENSP00000396935/1-662 ETTLSEDTTD SVGSASPHGS SEKSSSFSLS STEVHMVRPG YSHRVSLPTS ENSBTAP00000017794/1-663 ETSLPKGTTD SLGSSSAWGT AGNGSDSSVT LKEERAGLPR RCPHTSLITS ENSTTRP00000003391/1-627 ETSLSKGTVD SMGSSSARGS AEKGGGFSLT SKEERAVLPG RCPWTPLFTS bmy_21133T0/1-437 ETSLSKGTVD SIGSSSARGS AEKGSDSSLT SKEERAVLPG RCPWTSLFTS BACU012190/1-727 ETSLSKGTVD SMGSSPARGS AEKGSDSSLT SKEERAVLPG RCPWTALFTS 151 200 ENSP00000396935/1-662 PGI-LATSPY PETDSAFFEP SHLTSAADEG AVQVSRRTIS SNSFSPEVFV ENSBTAP00000017794/1-663 SKT-VSGPPC PEDGRAFFKP SQLTASADAD AVQVGGRTVS SNSFSPEAFV ENSTTRP00000003391/1-627 SKIDLAASPC READDTFFKP SQLTASTDAG AIQVGGRTVS SNSFSPEAFV bmy_21133T0/1-437 SKTDLAARPC READNAFFKP SQLTASTDAG ---------- ---------- BACU012190/1-727 SKIDLAARPC READNAFFKP SQLTASTDAG AIQVGGRTVS SNSFSPEAFV 201 250 ENSP00000396935/1-662 LPVDVEKENA HFYVADMIIS AMEKMKCNIL SQQQTESWS- KEVSGLLGSD ENSBTAP00000017794/1-663 LPVDAEKENA HFYVADMIIS VMEKMKCNIL SQQHTETWST EEAGRSLGNS ENSTTRP00000003391/1-627 LPVDVEKENA HFYIADMIIS VMENTKCSIL SQQHTETRST GEAGGPLGRE bmy_21133T0/1-437 ---------- ---------- ---------- ---------- ---------- BACU012190/1-727 LPVDVEKENA HFYIADMIIS VMENMKCSIL SQQRTETWSP GEASGSLGNE 251 300 ENSP00000396935/1-662 QPDSEMTFDT NIKQESGSST SSYSGYEG-- ---------C AVLQVSPVTE ENSBTAP00000017794/1-663 RADLEGTFYT HVKQESGSST SSDSGYEG-- ---------C -VLQVSPVVE ENSTTRP00000003391/1-627 PADLEGVFYS HIKQESGSST SSDSGSEG-- ---------C AVLQVSPVVE bmy_21133T0/1-437 ---------- ---------- ---------- ---------C AVLQVSPVVE BACU012190/1-727 QADSEVTFYS HIKQESGSST SSDSGSEGKW GKYEKASCCC AVLQVSPVVE 301 350 ENSP00000396935/1-662 TRTYHDV-KE ICKCDVDEFV ILELGDFNDI TETCSCSCSS SKSVTYEPDF ENSBTAP00000017794/1-663 TPTFSEVTEE DCKCDFDDFV IVELGDFSNT TEPCGCSSDT SKSVIHEPNF ENSTTRP00000003391/1-627 TPTYCDVMKD DCKCDLDEFV IVELGDFSNT TETCGCSCSS SKSVVYEPNF bmy_21133T0/1-437 TPTYCDVMKE DCKCDLDEFV IVELGDFSNA TETCGCSCSS SKSVIYEPNF BACU012190/1-727 TPTHCDVMKE DCKCDLDEFV IVELGDFSNA TETCGCSCSS SKSVIYEPNF 351 400 ENSP00000396935/1-662 NSAELLAKEL YRVFQKCWIL SVVNSQLAGS LSAAGSIVVN EECVRKDFES ENSBTAP00000017794/1-663 NSAELIAKEL YRVFRKCWML AEVHYQLTGS LDAAGSIVIN EERVQKDFES ENSTTRP00000003391/1-627 NSAELIAKEL YHLFRKCWM- SEVNYQLAGS LNAAGSIVVN EECVQKDFES bmy_21133T0/1-437 NSAELIAKEL YHLFKKCWM- SEVNYQLAGS LNAAGSIVVN EECVQKDFES BACU012190/1-727 NSAELIAKEL YHVFKKCWM- SEVNYQLAGS LNAAGSIVVN EECVQKDFES 401 450 ENSP00000396935/1-662 SMNVVQEIKF KSRIRGTEDW APPRFQIIFN IHPPLKRDLV VAAQNFFCAG ENSBTAP00000017794/1-663 STDVVQEIKL KSRIRGTGDW APPRFQIIFD IHPPLKRDLV VIAQNFFCAG ENSTTRP00000003391/1-627 STDVVQEIKL KSRIRGTGDW APPRFQIIFN VHPPLKRDLM VAAQNFFCAG bmy_21133T0/1-437 STDVVQEIKL KSRIRETGDW APPRFQIIFN VHPPLKRDLM VAAQNFFCAG BACU012190/1-727 STDVVQEIKL KSRIRETGDW APPRFQIIFN VHPPLKRDLM VAAQNFFCAG 451 500 ENSP00000396935/1-662 CGTPVEPKFV KRLRYCEYLG KYFCDCCHSY AESCIPARIL MMWDFKKYYV ENSBTAP00000017794/1-663 CGTPIEPKFV KRLRYCEYLG KYFCDCCHSY SESCIPARIL RMWDFRKYYV ENSTTRP00000003391/1-627 CGTPIEPKFV KRLRYCEYLG KYFCDCCHSY AESCIPARIL RLWDFRRYYV bmy_21133T0/1-437 CGTPIEPKFV KRLRYCEYLG KYFCDCCHSY AESCIPARIL RMWDFR---- BACU012190/1-727 CGTPIEPKFV KRLRYCEYLG KYFCDCCHSY AESCIPARIL RMWDFRRYYV 501 550 ENSP00000396935/1-662 SNFSKQLLDS IWHQPIFNLL SIGQSLYAKA KELDRVKEIQ EQLFHIKKLL ENSBTAP00000017794/1-663 SNFSKRLLDH IWHEPIFNLL HVSHGLYTKA KELDRVREIQ EQLFHIKKLL ENSTTRP00000003391/1-627 SNFSKRLLDS IWYQPIFNLL HVGHGLYTKA KELDRVREIQ EQLFHIRKLL bmy_21133T0/1-437 ---------- ---------- ---------- ---------- ---------- BACU012190/1-727 SNFSKRLLDS IWQQPIFNLL HVGHGLYTKA KELDRVREIQ EQLFHIGKLL 551 600 ENSP00000396935/1-662 KTCRFANSAL KEFEQVPGHL TDELHLFSLE DLVRIKKGLL APLLKDILKA ENSBTAP00000017794/1-663 KTCRFAESTL KEFEQLPGHL TEALHLFSLE DMVKVKKGLL APLLKDILKA ENSTTRP00000003391/1-627 KTCRFAESTL KEFEQVPGHL TDKLNLFSLE DLVRVKKGLL APLLKDILKV bmy_21133T0/1-437 ---------- ---------- ---------- ---------- ---------- BACU012190/1-727 KTCRFAESTL KEFEQVPGHL TDELHLFSLE DLVRVKKGLL APLLKDILKV 601 650 ENSP00000396935/1-662 SLAHVAGCEL CQGKGFICEF CQNTTVIFPF QTATCRRCS- ---------- ENSBTAP00000017794/1-663 SLEHVASCEL CQGKGFICEF CRSTAVIFPF QTATCRRCS- ---------- ENSTTRP00000003391/1-627 SLAHVASCEL CQGKGFICEF CRSTAVIFPF QTATCRRCS- ---------- bmy_21133T0/1-437 ---------- ---------- ---------- ---------- ---------- BACU012190/1-727 SLAHVASCEL CQGKGFICEF CRSTAVIFPF QTATCRRCSD SGFWVQIPPL 651 700 ENSP00000396935/1-662 ---------- ---------- ------ACRA CFHKQCFQSS ECPRCARITA ENSBTAP00000017794/1-663 ---------- ---------- ------ACRA CFHKQCFQSS KCPRCARITA ENSTTRP00000003391/1-627 ---------- ---------- ---------- ---------- ---------- bmy_21133T0/1-437 ---------- ---------- ------SMQG LLSQAVLPAL RVPPVCEDHS BACU012190/1-727 PGMGMSVCTY LRKPATCLLT VVLLACSMQG LLSQAVLPAL RVPPVCEDHS 701 750 ENSP00000396935/1-662 RRKLLESVAS AAT------- -------- ENSBTAP00000017794/1-663 RRRLLESLPS AAT------- -------- ENSTTRP00000003391/1-627 ---------- ---------- -------- bmy_21133T0/1-437 KEKTFGKFAL CGDVMPLTIV RKTVKHL- BACU012190/1-727 KEKTFGKFAL CGDVVPLTIV RKTVKHLL