KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:02:49 2014 Check: 00 .. Name: bmy_17685T0/1-890 Len: 918 Check: 4184 Weight: 1.00 Name: ENSP00000274695/1-579 Len: 918 Check: 1291 Weight: 1.00 Name: ENSBTAP00000017811/1-578 Len: 918 Check: 8415 Weight: 1.00 Name: BACU017609/1-612 Len: 918 Check: 7011 Weight: 1.00 Name: ENSTTRP00000008609/1-578 Len: 918 Check: 6960 Weight: 1.00 // 1 50 bmy_17685T0/1-890 ----MSHLDA IEHVSRDLTN LQMNKKIPWK KYQILYQSLT PASAERSFLP ENSP00000274695/1-579 ---------- ---------- ---------- ---------M PSASCDTLLD ENSBTAP00000017811/1-578 ---------- ---------- ---------- ---------M PSASCDTFLN BACU017609/1-612 MCHGELHLKS LQFPESGVLI FQEDLRLIAN NQEK-----M PSASCDTFLD ENSTTRP00000008609/1-578 ---------- ---------- ---------- ---------M PSASCDTFLD 51 100 bmy_17685T0/1-890 WQYPMDISLL ITKLVIVLTQ KEIFHGIREC KDTIGLVDCS EKPSFHCPRD ENSP00000274695/1-579 ---------- ---------- --------DI EDIVSQEDSK PQDRHFVRKD ENSBTAP00000017811/1-578 ---------- ---------- --------DI EDIVSQEDSK PQDRHFSRKH BACU017609/1-612 ---------- ---------- --------DI EDIVSQEDSK PQDRHFARKH ENSTTRP00000008609/1-578 ---------- ---------- --------DI EDIVSQEDSK PQDRHFARKH 101 150 bmy_17685T0/1-890 GLPVHCSHGS VCLLRRHGLG LLHCRSPRTG PFFFVCCIGS PVCPTMSDTA ENSP00000274695/1-579 VVPK------ ---VRRRNTQ KYLQEEENSP P--------- ------SDST ENSBTAP00000017811/1-578 VVPK------ ---VRRRNTQ KYL-QEENSP P--------- ------SDST BACU017609/1-612 VIPK------ ---VRRRNTQ KYL-QDENSP P--------- ------SDST ENSTTRP00000008609/1-578 VVPK------ ---VRRRNTQ KYL-QDENSP P--------- ------SDST 151 200 bmy_17685T0/1-890 MDTSSEIITK DLKEKKEVVE EVNGEQEAAS EVEEGGKGVE EGEGGRGEEE ENSP00000274695/1-579 IPGIQKIWIR TW-------- ---------- -----GCSHN NSDGE----- ENSBTAP00000017811/1-578 IPGIQKIWIR TW-------- ---------- -----GCSHN NSDGE----- BACU017609/1-612 IPGIQKIWIR TW-------- ---------- -----GCSHN NSDGE----- ENSTTRP00000008609/1-578 IPGIQKIWIR TW-------- ---------- -----GCSHN NSDGE----- 201 250 bmy_17685T0/1-890 GGMKTRRLRQ LWANGQLKVT RMTVLTPRSR KLMSLNAVRN SNNADGENAS ENSP00000274695/1-579 ---------- -YMAGQLAAY GYKIT----- ---------- ------ENAS ENSBTAP00000017811/1-578 ---------- -YMAGQLAAY GYKIT----- ---------- ------ENAS BACU017609/1-612 ---------- -YMAGQLAAY GYKIT----- ---------- ------ENAS ENSTTRP00000008609/1-578 ---------- -YMAGQLAAY GYKIT----- ---------- ------ENAS 251 300 bmy_17685T0/1-890 EADLWLLNSC TVKNPAEDHF RNSINGEFDV TSEKLTKGKS P-IKLAVGFL ENSP00000274695/1-579 DADLWLLNSC TVKNPAEDHF RNSIKKAQEE NKKIVLAGCV PQAQPRQDYL ENSBTAP00000017811/1-578 DADLWLLNSC TVKNPAEDHF RNSIKKAQEE NKKIVLAGCV PQAQPRQDYL BACU017609/1-612 EADLWLLNSC TVKNPAEDHF RNSIKKAQEE NKKVVLAGCV PQAQPRQDYL ENSTTRP00000008609/1-578 EADLWLLNSC TVKNPAEDHF RNSIKKAQEE NKKVVLAGCV PQAQPRQDYL 301 350 bmy_17685T0/1-890 DAL------- LNHCYKPPRE GMW-YSFR-- --SNEKATCF GENRTCVPLG ENSP00000274695/1-579 KGLSIIGVQQ IDRVVEVVEE TIKGHSVRLL GQKKDNGRRL GGARLDLPKI ENSBTAP00000017811/1-578 KGLSIIGVQQ IDRVVEVVEE TIKGHSVRLL GQKKDNGKRL GGARLDLPKI BACU017609/1-612 KGLSIIGVQQ IDRVVEVVEE TIKGHSVRLL GQKKDNGKRL GGARLDLPKI ENSTTRP00000008609/1-578 KGLSIIGVQQ IDRVVEVVEE TIKGHSVRLL GQKKDNGKRL GGARLDLPKI 351 400 bmy_17685T0/1-890 SSPPYNCQFF LLVLRS-CFS DFFFMLSNKY DVLQCFYKVE SRYRCDLFSV ENSP00000274695/1-579 RKNPL---IE IISINTGCLN ACTYCKTKHA RGNLASYPID ELVDRAKQSF ENSBTAP00000017811/1-578 RKNPL---IE IISINTGCLN ACTYCKTKHA RGNLASYPID ELVDRAKQSF BACU017609/1-612 RKNPL---IE IISINTGCLN ACTYCKTKHA RGNLASYPVD ELVDRAKQSF ENSTTRP00000008609/1-578 RKNPL---IE IISINTGCLN ACTYCKTKHA RGNLASYPVD ELVDRAKQSF 401 450 bmy_17685T0/1-890 IKIICDLSLF EQGGTGMFFI EPLKYLITKY YKGLNWYKC- FIKDNKVLYT ENSP00000274695/1-579 QEGVCEIWLT SE-DTGAYGR D-----IGTN LPTLLWKLVE VIPEGAMLRL ENSBTAP00000017811/1-578 QEGVCEIWLT SE-DTGAYGR D-----IGSS LPALLWKLVE VIPEGAMLRL BACU017609/1-612 QEGVCEIWLT SE-DTGAYGR D-----IGTS LPALLWKLVE VIPAGAMLRL ENSTTRP00000008609/1-578 QEGVCEIWLT SE-DTGAYGR D-----IGTS LPALLWKLVE VIPEGAMLRL 451 500 bmy_17685T0/1-890 NFTQMLHDFG CSCSLSHVKA LAPAAAV--V PVVTCSSTAL FLQKSDGGDK ENSP00000274695/1-579 GMTNPPYILE HLEEMAKILN HPRVYAFLHI PVQSASDSVL M--------- ENSBTAP00000017811/1-578 GMTNPPYILE HLEEMAKILH HPRVYAFLHI PVQSASDTVL M--------- BACU017609/1-612 GMTNPPYILE HLEEMAKILS HPRVYAFLHV PVQSASDSVL V--------- ENSTTRP00000008609/1-578 GMTNPPYILE HLEEMAKILN HPRVYAFLHI PVQSASDTVL M--------- 501 550 bmy_17685T0/1-890 GELKGKPCCL NTKKIVLKNM IALFQAYEPE QSLLNKKNRI KAQEENKKIV ENSP00000274695/1-579 -EMKREYCVA DFKRVV---- ---------- -DFLKEK--- ---------- ENSBTAP00000017811/1-578 -EMKREYCVA DFKRVV---- ---------- -DFLKDK--- ---------- BACU017609/1-612 -DMKREYCVA DFKRVV---- ---------- -DFLKDK--- ---------- ENSTTRP00000008609/1-578 -EMKREYCVA DFKRVV---- ---------- -DFLKDK--- ---------- 551 600 bmy_17685T0/1-890 LAGCVPQAQP RQDYLKGLSI IGDLFNSSLC LQFTVVDTYK LHKARDFVQQ ENSP00000274695/1-579 ---------- ----VPGITI ATDI----IC -------GFP GETDQDFQET ENSBTAP00000017811/1-578 ---------- ----VPGITI ATDI----IC -------GFP GETDQDFQET BACU017609/1-612 ---------- ----VPGITI ATDI----IC -------GFP GETDEDFQET ENSTTRP00000008609/1-578 ---------- ----VPGITI ATDI----IC -------GFP GETDQDFQET 601 650 bmy_17685T0/1-890 IDRVVEVVEE TIKVKRVLSK AQFPDSFAFT LFRVLLAILF CANIKTFFVI ENSP00000274695/1-579 V--------- -----KLVEE YKFPSLF--- ---------- ---INQFYPR ENSBTAP00000017811/1-578 V--------- -----KLVEE YKFPSLF--- ---------- ---INQFYPR BACU017609/1-612 V--------- -----KLVEE YKFPSLF--- ---------- ---INQFYPR ENSTTRP00000008609/1-578 V--------- -----KLVEE YKFPSLF--- ---------- ---INQFYPR 651 700 bmy_17685T0/1-890 LEGFKELECH LLLGLLSLLS SPGAYDDLKI VVISCTNNAV RMEEKLPLQP ENSP00000274695/1-579 ---------- ---------- -PGT------ -------PAA KMEQ-VPAQV ENSBTAP00000017811/1-578 ---------- ---------- -PGT------ -------PAA KMEQ-VPAQV BACU017609/1-612 ---------- ---------- -PGT------ -------PAA KMEQ-VPAQV ENSTTRP00000008609/1-578 ---------- ---------- -PGT------ -------PAA KMEQ-VPAQV 701 750 bmy_17685T0/1-890 KTLEMHAVVK KPLEAMPSNS SKHFVEKHLA TKGEEIRSSH KINRDQS--- ENSP00000274695/1-579 KKQRTKDLSR VFHSYSPYDH KIGERQQVLV TE-ESFDSKF YVAHNQFYEQ ENSBTAP00000017811/1-578 KKQRTKELSR IFHSYNPYDH KIGQRQQVLV TE-ESFDSKF YVAHNRFYEQ BACU017609/1-612 KKQRTKDLSQ VFHSYNPYDH KIGERQRVLV TE-ESFDSKF YVAHNRFYEQ ENSTTRP00000008609/1-578 KKQRTKDLSQ VFHSYNPYDH KIGERQKVLV TE-ESFDSKF YVAHNRFYEQ 751 800 bmy_17685T0/1-890 --GPKLPTLI CRLELVCTSR EGGRGPKKAQ EKVKGHSVRL LGQKKDNGKR ENSP00000274695/1-579 VLVPKNPAFM GKM-VEVDIY ESGK------ -----HFMK- -------GQP ENSBTAP00000017811/1-578 VLVPKNPTFM GKM-VEVDIY ESGK------ -----HFMK- -------GQP BACU017609/1-612 VLVPKNPTFM GKM-VEVNVY ESGK------ -----HFMK- -------GQP ENSTTRP00000008609/1-578 VLVPKNPTFM GKM-VEVNVY ESGK------ -----HFMK- -------GQP 801 850 bmy_17685T0/1-890 LGGARLDLPK IRKNPLI--E IISINTGIFL PLSKPVPSFP PALLQLCCHW ENSP00000274695/1-579 VSDAKVYTPS ISK-PLAKGE VSGLTKDFRN GLGNQLSSGS HTSAASQCDS ENSBTAP00000017811/1-578 VSDAKVYTPS ISK-PLARGE VSGLTEEFRN RLGNHLNSVP HTSAANRRES BACU017609/1-612 VSDAKVYTPS ISK-PLAKGE ISGLTEEFRN RLGNHLNSVS HTLDATQRNS ENSTTRP00000008609/1-578 VSDAKVYAPS ISK-PLAKGE ISGLTEEFRN RLGNHLNSVS HTLDATQQDS 851 900 bmy_17685T0/1-890 LSFLLPYRPP LVHPPRCRQR PGTVEEDIWL FPKNPWGLSV DFVNLSRTNV ENSP00000274695/1-579 ASSRMVLPMP RLH------- -----QDCAL ---------- ------RMSV ENSBTAP00000017811/1-578 ASSRMVLRLQ RLH------- -----QDFAL ---------- ------KMSV BACU017609/1-612 ASSRMALPLQ RLH------- -----QDCAL ---------- ------RMSV ENSTTRP00000008609/1-578 ASSRMALQLQ RLH------- -----QDCTL ---------- ------RMSV 901 950 bmy_17685T0/1-890 WPSLWKIHKP GLIKLRDY ENSP00000274695/1-579 GLALLGLLFA FFVKVYN- ENSBTAP00000017811/1-578 GLALFALLFA LLVKVYN- BACU017609/1-612 VLALFAFLFA FLIKVYN- ENSTTRP00000008609/1-578 VLALFAFLFA FLIKVCN-