KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:02:54 2014 Check: 00 .. Name: ENSTTRP00000004841/1-885 Len: 896 Check: 9481 Weight: 1.00 Name: ENSP00000353249/1-886 Len: 896 Check: 9130 Weight: 1.00 Name: ENSBTAP00000017831/1-885 Len: 896 Check: 2714 Weight: 1.00 Name: bmy_01069T0/1-845 Len: 896 Check: 7208 Weight: 1.00 Name: BACU014541/1-805 Len: 896 Check: 9387 Weight: 1.00 // 1 50 ENSTTRP00000004841/1-885 MELRCGGLLF SSRFDSGNLA HVEKVESVSS DGEGVVGGAS ASTSSIASSP ENSP00000353249/1-886 MELRCGGLLF SSRFDSGNLA HVEKVESLSS DGEGVGGGAS ALTSGIASSP ENSBTAP00000017831/1-885 MELRCGGLLF SSRFDSGNLA HVEKVESVSN DGEGVAGGAS ASTSSIASSP bmy_01069T0/1-845 MELRCGGLLF SSRFDSGNLA HVEKVESVSS DGEGVAGGTS ASTSSIASSP BACU014541/1-805 MELRCGGLLF SSRFDSGNLG HVEKVESVSS DGEGVAGGAS ASTSSIASSP 51 100 ENSTTRP00000004841/1-885 DYEFNVWTRP DCAETEFENG NRSWFYFSVR GGTPGKLIKI NVMNMNKQSK ENSP00000353249/1-886 DYEFNVWTRP DCAETEFENG NRSWFYFSVR GGMPGKLIKI NIMNMNKQSK ENSBTAP00000017831/1-885 DYEFNVWTRP DCAETEFENG NRSWFYFSVR GGTPGKLIKI NIMNMNKQSK bmy_01069T0/1-845 DYEFNVWTRP DCAETEFENG NRSWFYFSVR GGTPGKLIKI NVMNMNKQSK BACU014541/1-805 DYEFNVWTRP DCAETEFENG NRSWFYFSVR GGTPGKLIKI NVMNMNKQSK 101 150 ENSTTRP00000004841/1-885 LYSQGMAPFV RTLPTRPRWE RIRDRPTFEM TETQFVLSFV HRFVESRGAT ENSP00000353249/1-886 LYSQGMAPFV RTLPTRPRWE RIRDRPTFEM TETQFVLSFV HRFVEGRGAT ENSBTAP00000017831/1-885 LYSQGMAPFV RTLPTRPRWE RIRDRPTFEM TETQFVLSFI HRFVEGRGAT bmy_01069T0/1-845 LYSQGMAPFV RTLPTRPRWE RIRDRPTFEM TETQFVLSFV HRFVESRGAT BACU014541/1-805 LYSQGMAPFV RTLPTRPRWE RIRDRPTFEM TETQFVLSFV HRFVESRGAT 151 200 ENSTTRP00000004841/1-885 TFFAFCYPFS YSDCQDLLNQ LDQRFLENHP THSSPLDTIY YHRETLCYSL ENSP00000353249/1-886 TFFAFCYPFS YSDCQELLNQ LDQRFPENHP THSSPLDTIY YHRELLCYSL ENSBTAP00000017831/1-885 TFFAFCYPFS YSDCQDLLSQ LDQRFLENSP THSSPLDTIY YHRETLCYSL bmy_01069T0/1-845 TFFAFCYPFS YSDCQDLLNQ LDQRFLENHP THSSPLDTIY YHRETLCYSL BACU014541/1-805 TFFAFCYPFS YSDCQDLLNQ LDQRFLENHP THSSPLDTIY YHRETLCYSL 201 250 ENSTTRP00000004841/1-885 DGLRVDLLTI SSCHGLREDR EPRLEQLFPD ASTPRPFRFT GKRXXXXXXX ENSP00000353249/1-886 DGLRVDLLTI TSCHGLREDR EPRLEQLFPD TSTPRPFRFA GKRIFFLSSR ENSBTAP00000017831/1-885 DGLRVDLLTI SSCHGLREDR EPRLEQLFPD ASTPRPFRFT GKRIFFLSSR bmy_01069T0/1-845 DGLRVDLLTI SSCHGLREDR EPRLEQLFPD ASTPRPFRFT GKRIFFLSSR BACU014541/1-805 DGLRVDLLTI SSCHGLREDR EPRLEQLFPD ASTPRPFRFT GKRIFFLSSR 251 300 ENSTTRP00000004841/1-885 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000353249/1-886 VHPGETPSSF VFNGFLDFIL RPDDPRAQTL RRLFVFKLIP MLNPDGVVRG ENSBTAP00000017831/1-885 VHPGETPSSF VFNGFLDFIL RPDDPRAQTL RRLFVFKLIP MLNPDGVVRG bmy_01069T0/1-845 VHPGETPSSF VFNGFLDFIL RPDDPRAQTL RRLFVFKLIP MLNPDGVVRG BACU014541/1-805 VHPGETPSSF VFNGFLDFIL RPDDPRAQTL RRLFVFKLIP MLNPDGVVRG 301 350 ENSTTRP00000004841/1-885 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000353249/1-886 HYRTDSRGVN LNRQYLKPDA VLHPAIYGAK AVLLYHHVHS RLNSQSSSEH ENSBTAP00000017831/1-885 HYRTDSRGVN LNRQYLKPDA VLHPAIYGAK AVLLYHHVHS RLNSQSPSEH bmy_01069T0/1-845 HYRTDSRGVN LNRQYLKPDA VLHPAVYGAK AVLLYHHVHS RLNSQSPSEH BACU014541/1-805 HYRTDSRGVN LNRQYLKPDA VLHPAVYGAK AVLLYHHVHS RLNSQSPSEH 351 400 ENSTTRP00000004841/1-885 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000353249/1-886 QPSSCLPPDA PVSDLEKANN LQNEAQCGHS ADRHNAEAWK QTEPAEQKLN ENSBTAP00000017831/1-885 QHSSHLPPDA PLSDPEKADS LQNRAHLGRS SSGDKPEAWT QTEVAEQKPN bmy_01069T0/1-845 QHSPHLPPDA PLSDLEKANN LRNEARLGHS SDGENPEAWT QTEPAEPKHH BACU014541/1-805 QHSPHLPPDA PLSDLEKANN LRNEARRGHS SDGENPEAWT QTEPAGPKHH 401 450 ENSTTRP00000004841/1-885 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000353249/1-886 SVWIMPQQSA GLEESAPDTI PPKESGVAYY VDLHGHASKR GCFMYGNSFS ENSBTAP00000017831/1-885 SVWITPQESA EVEQLAPDAI PPRESGVAYY VDLHGHASKR GCFMYGNSFS bmy_01069T0/1-845 SVWIMPQQST EAEHPDPDTI PPKESGVAYY VDLHGHASKR GCFMYGNSFS BACU014541/1-805 SVWIMPQQST EAEHPDPDTI PPKESGVAYY VDLHGHASKR GCFMYGNSFS 451 500 ENSTTRP00000004841/1-885 XXXXQVENML YPKLISLNSA HFDFQGCNFS EKNMYARDRR DGQSKEGSGR ENSP00000353249/1-886 DESTQVENML YPKLISLNSA HFDFQGCNFS EKNMYARDRR DGQSKEGSGR ENSBTAP00000017831/1-885 DENTQVENML YPKLISLNSA HFDFQGCNFS EKNMYARDRR DGQSKEGSGR bmy_01069T0/1-845 DENTQVENML YPKLISLNSA HFDFQGCNFS EKNMYARDRR DGQSKEGSGR BACU014541/1-805 DENTQVENML YPKLISLNSA HFDFQGCNFS EKNMYARDRR DGQSKEGSGR 501 550 ENSTTRP00000004841/1-885 VAIYKASGII HSYTLECNYN TGRSVNSIPA ACHDNGRASP PPLPAFPSRY ENSP00000353249/1-886 VAIYKASGII HSYTLECNYN TGRSVNSIPA ACHDNGRASP PPPPAFPSRY ENSBTAP00000017831/1-885 VAIYKASGII HSYTLECNYN TGRSVNSIPA ACHDNGRASP PPPPAFPSRY bmy_01069T0/1-845 VAIYKASGII HSYTLECNYN TGRSVNSIPA ACHDNGRASP PPPPAFPSRY BACU014541/1-805 VAIYKASGII HSYTLECNYN TGRSVNSIPA ACHDNGRASP PPPPAFPSRY 551 600 ENSTTRP00000004841/1-885 TVEQFEQVGR AMAIAALDMA ECNPWPRIVL SEHNSLTNLR AWMLKHVRSS ENSP00000353249/1-886 TVELFEQVGR AMAIAALDMA ECNPWPRIVL SEHSSLTNLR AWMLKHVRNS ENSBTAP00000017831/1-885 TVELFEQVGR AMAIAALDMA ECNPWPRIVL SEHSSLTNLR AWMLKHVRSS bmy_01069T0/1-845 TVEQFEQVGR AMAIAALDMA ECNPWPRIVL SEHSSLTNLR AWMLKHVRSS BACU014541/1-805 TVEQFEQVGR AMAIAALDMA ECNPWPRIVL SEHSSLTNLR AWMLKHVRSS 601 650 ENSTTRP00000004841/1-885 RGVSTTVNTG VNKKRGSRTP PKSNNGLPVS CSENTLSCTR SFSTGTSAGG ENSP00000353249/1-886 RGLSSTLNVG VNKKRGLRTP PKSHNGLPVS CSENTLSRAR SFSTGTSAGG ENSBTAP00000017831/1-885 RGLSTTVNMS ISKKRGSRTP PRSNNGLPVS CSENTLSRAR SFSTGTSAGG bmy_01069T0/1-845 RGPSTTVNTG VNKKRGSRTP PRSNNGLPVS CSENTLSCTR SFSTGTSAGG BACU014541/1-805 RGLSTTVNTG VNKKRGSRTP PRSNNGLPVS CSENTLSCVR SFSTGTSAGG 651 700 ENSTTRP00000004841/1-885 SSSSQQNSPQ MKNSLSFPFH GSRPAGLPGL GSSTQKVSHR VLGPVREPRS ENSP00000353249/1-886 SSSSQQNSPQ MKNSPSFPFH GSRPAGLPGL GSSTQKVTHR VLGPVREPRS ENSBTAP00000017831/1-885 SSSSQQNSPQ MKNSPSFPFH GSRPAGLPGL GSSTQKVSHR VLGPVREPRS bmy_01069T0/1-845 SSSSQQNSPQ MKNSLSXPFH GSRPAGLPGL GSSTQKVSHR VLGPVRARNS BACU014541/1-805 SSSSQQNSPQ MKNSLSFPFH GSRPAGLPGL GSSTQKVSHR VLGPVREPRS 701 750 ENSTTRP00000004841/1-885 QDRRRRQQPL THHPTSSSPA PSPTPVSSNT ASLH-MGSCL LPNSLGTSGS ENSP00000353249/1-886 QDRRRQQQPL NHRP-AGSLA PSPAPTSSGP ASSHKLGSCL LPDSFNIPGS ENSBTAP00000017831/1-885 QDRRRRQQPV THRPTSSSLA PSPTPASSNL ASSH-MGSCL LPNSLSISGS bmy_01069T0/1-845 AQELKAPVPV L--------- ---TPILHSY A--------- ---------- BACU014541/1-805 QDRRRRQQPL THR------- ----PTSSSP A--------- ---------- 751 800 ENSTTRP00000004841/1-885 SCSFLPSGDK PEAVMVIGKG LLGAGPRIPC IRTRLQARPR LGRGSPPTRR ENSP00000353249/1-886 SCSLLSSGDK PEAVMVIGKG LLGTGARMPC IKTRLQARPR LGRGSPPTRR ENSBTAP00000017831/1-885 SCSFLSSGDK TEAVMVIGKG LLGAGPRIPC IRTRLQARPR LAQGSPPTRR bmy_01069T0/1-845 ---WILEGNL EAKKFMEESS LI-------A YPLSTQARPR LGRGSPPTRR BACU014541/1-805 ---------- ---------- ---------- ---------- ---------- 801 850 ENSTTRP00000004841/1-885 GMRGSSGPTS PTPRSRESSE PEPGPCSIPR -LPQAGPPRP CSAPAFSP-- ENSP00000353249/1-886 GMKGSSGPTS PTPRTRESSE LELGSCSATP GLPQARPPRP RSAPAFSP-- ENSBTAP00000017831/1-885 GMRGSPGPTS PIPQTKKSSE PELGPRCTPR -LPQAGPPRP CSAPAFSP-- bmy_01069T0/1-845 GMRGSSGPTS PIPRTRESSE PEPGPCSIPR -LPQAGPPRP RSAPAFSP-- BACU014541/1-805 -------P-S PTPVSSNTAS LHMGSCLLPN SLSISGSSCS FLSSGDKPEA 851 900 ENSTTRP00000004841/1-885 ---ISRSLSD SQSRICYSGG PLGQTEVCFV PKSP----PL TVSPRV ENSP00000353249/1-886 ---ISCSLSD SPSWNCYSRG PLGQPEVCFV PKSP----PL TVSPRV ENSBTAP00000017831/1-885 ---ISCSLSD SQSRICYSGG PLGQTEVCFV PKSP----PF TVSPRV bmy_01069T0/1-845 ---ISRSLSD SQSRICYSGG PLGQTEVCFV PKSP----PF PVSPRV BACU014541/1-805 VMVIGKGLLR AGPRIPCIRT RL-QAASGWA PAAPLCPCLF SYFP--