KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:03:01 2014 Check: 00 .. Name: ENSTTRP00000006108/1-773 Len: 886 Check: 4123 Weight: 1.00 Name: bmy_05893T0/1-572 Len: 886 Check: 9926 Weight: 1.00 Name: BACU006303/1-836 Len: 886 Check: 7205 Weight: 1.00 Name: ENSP00000411397/1-753 Len: 886 Check: 7770 Weight: 1.00 Name: ENSBTAP00000017848/1-798 Len: 886 Check: 6588 Weight: 1.00 // 1 50 ENSTTRP00000006108/1-773 MSTRTPLPTV NERDTENXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_05893T0/1-572 ---------- ---------- ---------- ---------- ---------- BACU006303/1-836 ---------- --------HT SHGDGRQEVT SRTGRSGARC RNSVASCADE ENSP00000411397/1-753 MSTRTPLPTV NERDTEN-HT SHGDGRQEVT SRTSRSGARC RNSIASCADE ENSBTAP00000017848/1-798 MKVLDSVPRG EEAVSAQ-HT SHGDGRQEVT SRSGRSGARC RNSIASCADE 51 100 ENSTTRP00000006108/1-773 XXXXXXXXXX XXXXXXXXXX XXMARHILTG REVAIKIIDK TQLNPTSLQK bmy_05893T0/1-572 ---------- ---------- ---------- ---------- ---------- BACU006303/1-836 QPHIGNYRLL KTIGKGNFAK VKLARHILTG REVAIKIIDK TQLNPTSLQK ENSP00000411397/1-753 QPHIGNYRLL KTIGKGNFAK VKLARHILTG REVAIKIIDK TQLNPTSLQK ENSBTAP00000017848/1-798 QPHIGNYRLL KTIGKGNFAK VKLARHILTG REVAIKIIDK TQLNPTSLQK 101 150 ENSTTRP00000006108/1-773 LFREVRIMKI LNHPNIVKLF EVIETDKTLY LIMEYASGGE VFDYLVAHGR bmy_05893T0/1-572 -------MKI LNHPNIVKLF EVIETDKTLY LIMEYASGGE VFDYLVAHGR BACU006303/1-836 ----VTCFK- ------VKLF EVIETDKTLY LIMEYASGGE VFDYLVAHGR ENSP00000411397/1-753 LFREVRIMKI LNHPNIVKLF EVIETEKTLY LIMEYASGGE VFDYLVAHGR ENSBTAP00000017848/1-798 LFREVRIMKI LNHPNIVKLF EVIETDKTLY LIMEYASGGE VFDYLVAHGR 151 200 ENSTTRP00000006108/1-773 MKEKEARAKF RQGCGRHSIQ VASFDLLSLV FTVIVSAVQY CHQKRIVHRD bmy_05893T0/1-572 MKEKEARAKF RQ-------- ---------- ---IVSAVQY CHQKRIVHRD BACU006303/1-836 MKEKEARAKF RQ-------- ---------- ---IVSAVQY CHQKRIVHRD ENSP00000411397/1-753 MKEKEARSKF RQ-------- ---------- ---IVSAVQY CHQKRIVHRD ENSBTAP00000017848/1-798 MKEKEARAKF RQ-------- ---------- ---IVSAVQY CHQKRIVHRD 201 250 ENSTTRP00000006108/1-773 LKAENLLLDA DMNIKIADFG FSNEFTVGSK LDTFCGSPPY AAPELFQGKK bmy_05893T0/1-572 LKAENLLLDA DMNIKIADFG FSNEFTVGSK LDTFCGSPPY AAPELFQGKK BACU006303/1-836 LKAENLLLDA DMNIKLADFG FSNEFTVGSK LDTFCGSPPY AAPELFQGKR ENSP00000411397/1-753 LKAENLLLDA DMNIKIADFG FSNEFTVGGK LDTFCGSPPY AAPELFQGKK ENSBTAP00000017848/1-798 LKAENLLLDA DMNIKIADFG FSNEFTVGSK LDTFCGSPPY AAPELFQGKK 251 300 ENSTTRP00000006108/1-773 YDGPEVDVWS LGVILYTLVS GSLPFDGQNL KELRERVLRG KYRIPFYMST bmy_05893T0/1-572 YDGPEVDVWS LGVILYTLVS GSLPFDGQNL KELRERVLRG KYRIPFYMST BACU006303/1-836 YDGPEVDVWS LGVILYTLVS GSLPFDGQNL KELRERVLRG KYRIPFYMST ENSP00000411397/1-753 YDGPEVDVWS LGVILYTLVS GSLPFDGQNL KELRERVLRG KYRIPFYMST ENSBTAP00000017848/1-798 YDGPEVDVWS LGVILYTLVS GSLPFDGQNL KELRERVLRG KYRIPFYMST 301 350 ENSTTRP00000006108/1-773 DCENLLKRFL VLNPIKRGTL E--------- -----QIMKD RWINAGHEED bmy_05893T0/1-572 DCENLLKRFL VLNPIKRGTL E--------- -----QIMKD RWINAGHEED BACU006303/1-836 DCENLLKRFL VLNPIKRGTL ENVSFYAANE QFTFQQIMKD RWINAGHEED ENSP00000411397/1-753 DCENLLKRFL VLNPIKRGTL E--------- -----QIMKD RWINAGHEED ENSBTAP00000017848/1-798 DCENLLKRFL VLNPIKRGTL E--------- -----QIMKD RWINAGHEDD 351 400 ENSTTRP00000006108/1-773 ELKPFVEPEL DISDQKRIDI MVGMGYSQDE IQESLSKMKY DEITATYLLL bmy_05893T0/1-572 ELKPFVEPEL DISDQKRIDI MVGMGYSQDE IQESLSKMKY DEITATYLLL BACU006303/1-836 ELKPFVEPEL DISDQKRIDI MVGMGYSQDE IQESLSKMKY DEITATYLLL ENSP00000411397/1-753 ELKPFVEPEL DISDQKRIDI MVGMGYSQEE IQESLSKMKY DEITATYLLL ENSBTAP00000017848/1-798 ELKPFVEPEL DISDQKRIDI MVGMGYTQEE IQESLSKMKY DEITATYLLL 401 450 ENSTTRP00000006108/1-773 GRKSSELDAS DSSSSSNLSL AKVRPSSDLN NSTGQSP-HK VQRSVSSSE- bmy_05893T0/1-572 GRKSSELDAS DSSSSSNLSL AKVRPSSDLS NSTGQSPHHK VQRSVSSSQK BACU006303/1-836 GRKSSELDAS DSSSSSNLSL AKVRPSSDLN NSTGQSPHHK VQRSVSSSQK ENSP00000411397/1-753 GRKSSELDAS DSSSSSNLSL AKVRPSSDLN NSTGQSPHHK VQRSVFSSQK ENSBTAP00000017848/1-798 GRKSSELDAS DSSSSSNLSL AKVRPSSDLN NSTGQSPHHK VQRSVSSSQK 451 500 ENSTTRP00000006108/1-773 QRRYSDHAGP AIPSVVAYPK RSQTSTADGD LREDGVPSRK PGGSAAGGKG bmy_05893T0/1-572 QRRYSDHAGP AIPSVVAYPK RSQTSTADGD LREDGVPSRK AGGSAAGGKG BACU006303/1-836 QRRYSDHAGP AIPSVVAYPK RSQTSTADGD LREDGVPSRK PGGSAAGGKG ENSP00000411397/1-753 QRRYSDHAGP AIPSVVAYPK RSQTSTADSD LKEDGISSRK SSGSAVGGKG ENSBTAP00000017848/1-798 QRRYSDHAGP AIPSVVAYPK RSQTSTADSD LKEDGVPSRK PGASAVGGKG 501 550 ENSTTRP00000006108/1-773 VAPASPMLGS ASNPNKADIP ERKKSSTVPG SNTASGGMTR RNTYVCSERT bmy_05893T0/1-572 VAPASPMLGS ASNPNKADIP ERKKSSTVPG SNTASGGMTR RNTYVCSERT BACU006303/1-836 VAPASPMLGS ASNPNKADIP ERKKSSTVPG SNTASGGMTR RNTYVCSERT ENSP00000411397/1-753 IAPASPMLGN ASNPNKADIP ERKKSSTVPS SNTASGGMTR RNTYVCSERT ENSBTAP00000017848/1-798 IAPASPMLGN ASNPNKADIP ERKKSSTVPS SNTASGGMTR RNTYVCSERT 551 600 ENSTTRP00000006108/1-773 TADRHSVIHN GKENS----- ---------- ---------- ---------- bmy_05893T0/1-572 TADRHSVIQN GKENSLMEMF AYAASPASVC KTSSTCRLRH HKSMSMSGSG BACU006303/1-836 TADRHSVIQN GKENSLMEMF AYAASPASVC KTSSTCRLRH HKSMSMSGSG ENSP00000411397/1-753 TADRHSVIQN GKENS----- ---------- ---------- ---------- ENSBTAP00000017848/1-798 TADRHSVIQN GKENSLTEMF AYAASPASVC KTSSTCRLRH QKSMSMSASG 601 650 ENSTTRP00000006108/1-773 ---------- ---------T IPDQRAPVAS THSISSATTP DRTRFPRGTA bmy_05893T0/1-572 RPKMMLPPID SEGDNFKAIT IPDQRAPVAS THSISSATTP DRTRFPRGTA BACU006303/1-836 RPKMMLPPID SEGDNFKAIT IPDQRAPVAS THSISSTTTP DRTRFPRGTA ENSP00000411397/1-753 ---------- ---------T IPDQRTPVAS THSISSAATP DRIRFPRGTA ENSBTAP00000017848/1-798 HPKMMLPPID SEGDNFKAIT IPDQRAPVAS THSISSSTTP DRTRFPRGTA 651 700 ENSTTRP00000006108/1-773 SRSTFHGQPR ERRTATYNGP PASPSLSHEA TPLSQTRSRG STNLFSKLTS bmy_05893T0/1-572 SRSTFHGQPR ERRTATYNGP PASPSLSHEA TPLSQTRSRG STNLFSKLTS BACU006303/1-836 SRSTFHGQPR ERRTATYNGP PASPSLSHEA TPLSQTRSRG STNLFSKLTS ENSP00000411397/1-753 SRSTFHGQPR ERRTATYNGP PASPSLSHEA TPLSQTRSRG STNLFSKLTS ENSBTAP00000017848/1-798 SRSTFHGQPR ERRTATYNGP PASPSLSHEA TPLSQTRSRG STNLFSKLTS 701 750 ENSTTRP00000006108/1-773 KLTR------ ---------- ---------- ---------- -----RNMSF bmy_05893T0/1-572 KLTR------ ---------- ---------- ---------- ---------- BACU006303/1-836 KLTRSSSAGK AQVLAPRCRK ETCCDVVGLA SESSPSAPGG ALDVVRALES ENSP00000411397/1-753 KLTR------ ---------- ---------- ---------- -----RNMSF ENSBTAP00000017848/1-798 KLTR------ ---------- ---------- ---------- ---------- 751 800 ENSTTRP00000006108/1-773 RFIKRLPTEY ERNGRYEG-- SSRNVSAEQK EENKEAKPRS LRFTWSMKTT bmy_05893T0/1-572 ---------- ---------- --RNMS---- ---------- --F------- BACU006303/1-836 YGLRALRVAH TLQAGQPGRK RSRNVSAEQK EENKEAKPRS LRFTWSMKTT ENSP00000411397/1-753 RFIKRLPTEY ERNGRYEG-- SSRNVSAEQK DENKEAKPRS LRFTWSMKTT ENSBTAP00000017848/1-798 ----RLPTEY ERNGRYEG-- SSRNVSAEQK EENKDAKPRS LRFTWSMKTT 801 850 ENSTTRP00000006108/1-773 SSMDPNDMMR EIRKVLDANN CDYEQRERFL LFCVHGDGHA ESLVQWEMEV bmy_05893T0/1-572 ---------- ---------- -------RFI ---------- ---------- BACU006303/1-836 SSMDPNDMMR EIRKVLDANN CDYEQRERFL LFCVHGDGHA ESLVQWEMEV ENSP00000411397/1-753 SSMDPGDMMR EIRKVLDANN CDYEQRERFL LFCVHGDGHA ENLVQWEMEV ENSBTAP00000017848/1-798 SCMDPKDMMR EIRKVLDANS CDYEQRERFL LFCVHGDGHA ENLVQWEMEV 851 900 ENSTTRP00000006108/1-773 CKLPRLSLNG VRFKRISGTS IAFKNIASKI ANELKL bmy_05893T0/1-572 ---------- ---KR----- ---------- ------ BACU006303/1-836 CKLPRLSLNG VRFKRISGTS IAFKNIASKI ANELKL ENSP00000411397/1-753 CKLPRLSLNG VRFKRISGTS IAFKNIASKI ANELKL ENSBTAP00000017848/1-798 CKLPRLSLNG VRFKRISGTS IAFKNIASKI ANELKL