KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:03:02 2014 Check: 00 .. Name: bmy_19929T0/1-160 Len: 328 Check: 7353 Weight: 1.00 Name: BACU012605/1-172 Len: 328 Check: 9879 Weight: 1.00 Name: ENSP00000385757/1-296 Len: 328 Check: 9817 Weight: 1.00 Name: ENSTTRP00000006553/1-296 Len: 328 Check: 172 Weight: 1.00 Name: ENSBTAP00000017850/1-296 Len: 328 Check: 9554 Weight: 1.00 // 1 50 bmy_19929T0/1-160 ---MPGPRLH PRGCVSRCVL KNALEVGGRK FIASFPKVDH QDIVGRWGEG BACU012605/1-172 MNAEPERKF- --GVVVVGIG RAG-SVRIRD LRNPHASSAY LNLIG----- ENSP00000385757/1-296 MNAEPERKF- --GVVVVGVG RAG-SVRMRD LRNPHPSSAF LNLIG----- ENSTTRP00000006553/1-296 MNAEPERKF- --GVVVVGIG RAG-SVRIRD LQNPHASSAY LNLMG----- ENSBTAP00000017850/1-296 MNTEPERKF- --GVVVVGVG RAG-SVRMRD LRNPHASSAF LNLIG----- 51 100 bmy_19929T0/1-160 WHSCFLSRCF LSSAYFELHT CLFLSNRREL GSTDGVPQIS LEDALSSQEV BACU012605/1-172 ---------- ---------- ---FVSRRKL GSTDGVPQIS LEDALSSQEV ENSP00000385757/1-296 ---------- ---------- ---FVSRREL GSIDGVQQIS LEDALSSQEV ENSTTRP00000006553/1-296 ---------- ---------- ---FVSRREL GSTDGVPQIS LEDALSSQEV ENSBTAP00000017850/1-296 ---------- ---------- ---FVSRREL GSIDEVPQIS LEDALSSQEV 101 150 bmy_19929T0/1-160 EVAYICSESS SHEDYIRQFL NAGKHVLVEY PMTLSWAAAK ELWALAEQKG BACU012605/1-172 EVAYICSESS SHEDYIRQFL NAGKHVLVEY PMTLSWAAAK ELWALAEQKG ENSP00000385757/1-296 EVAYICSESS SHEDYIRQFL NAGKHVLVEY PMTLSLAAAQ ELWELAEQKG ENSTTRP00000006553/1-296 EVAYICSESS SHEDYIRQFL NAGKHVLVEY PMTLSWAAAK ELWALAEQKG ENSBTAP00000017850/1-296 EVAFICSESS SHEDYIRQFL NAGKHVLVEY PMTLSWVAAK DLWELAEQKG 151 200 bmy_19929T0/1-160 DV-------- ---------- ---------- ---------- ---------- BACU012605/1-172 KVLHEEHVEL LMEEFAFLKK EVVGKDLLKG SLLFT----- ---------- ENSP00000385757/1-296 KVLHEEHVEL LMEEFAFLKK EVVGKDLLKG SLLFTAGPLE EERFGFPAFS ENSTTRP00000006553/1-296 KVLHEEHVEL LMEEFAFLKK EVVGKDLLKG SLLFTASPLE EERFGFPAFS ENSBTAP00000017850/1-296 KVLHEEHVEL LMEEFAFLKK EVVGKDLLKG SLLFTAAPLE EERFGFPAFS 201 250 bmy_19929T0/1-160 ---------- -------CSV HLEHRPSS-- ---------- ---------- BACU012605/1-172 ---------- ---------V NLRNRKK--- ---------- ---------- ENSP00000385757/1-296 GISRLTWLVS LFGELSLVSA TLEERKEDQY MKMTVCLETE KKSPLSWIEE ENSTTRP00000006553/1-296 GISRLTWLVS LFGELSLVSA TLEERKEDQY MKMTVCLETE NKSPLTWIEE ENSBTAP00000017850/1-296 GISRLTWLVS LFGELSLVSA TLEERKEDQY MKMTVCLETE NKSPLTWIEE 251 300 bmy_19929T0/1-160 ---------- ---------- ---------- ---------- ---------- BACU012605/1-172 -----RRRFY ASLH------ ---------- ------QN-- ---------- ENSP00000385757/1-296 KGPGLKRNRY LSFHFKSGSL ENVPNVGVNK NIFLKDQNIF VQKLLGQFSE ENSTTRP00000006553/1-296 KAPGLKRNRH LSFHFKSGSL ENMPNVGVNK NIFLKDQNIF VQKLLGQFSE ENSBTAP00000017850/1-296 KAPGLKRNRR LSFHFRSGSL ENMPNVGINK NIFLKDQNIF VQKLLGQFSE 301 350 bmy_19929T0/1-160 ---------- ---------- -------- BACU012605/1-172 ---------- ---------- -------- ENSP00000385757/1-296 KELAAEKKRI LHCLGLAEEI QKYCCSRK ENSTTRP00000006553/1-296 EELAAEKKRI LHCLWLAGEI QKHCRPKK ENSBTAP00000017850/1-296 EELAAEKKRI LHCLWLAGEI QKHCCSKQ