KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:03:03 2014 Check: 00 .. Name: BACU007719/1-281 Len: 283 Check: 2838 Weight: 1.00 Name: ENSP00000328570/1-157 Len: 283 Check: 6372 Weight: 1.00 Name: ENSBTAP00000017860/1-158 Len: 283 Check: 814 Weight: 1.00 Name: bmy_21686T0/1-154 Len: 283 Check: 9405 Weight: 1.00 Name: ENSTTRP00000014264/1-153 Len: 283 Check: 6154 Weight: 1.00 // 1 50 BACU007719/1-281 MFRWTPGEKA PACETNASTA VTQGSVFRDS MAVTDVLTPP PQASLLLALG ENSP00000328570/1-157 ---------- ---------- -MSGSLGRAA A----ALLRW GRGA--GGGG ENSBTAP00000017860/1-158 ---------- ---------- -MSGSLGRAA ATAASALLRW GRGA---GGG bmy_21686T0/1-154 ---------- ---------- -MSGSLGRAA A----ALLRW GRGA---GGG ENSTTRP00000014264/1-153 ---------- ---------- -MSGSLGRAA A----ALLRW GRGA---GGG 51 100 BACU007719/1-281 IRGPCQAPSA SYLLLSRDLD VFSTTRVAAM --GSPSIQDG NQQLPSQESS ENSP00000328570/1-157 LWGP------ ---------- ---GVRAAGS GAGGG----G SAEQ------ ENSBTAP00000017860/1-158 LRGP------ ---------- ---GVRAAGS --GGS----G SSEH------ bmy_21686T0/1-154 LRGP------ ---------- ---GVRAESS --GGS----G SSEQ------ ENSTTRP00000014264/1-153 LRGP------ ---------- ---GVRASSS --GGS----G SSEH------ 101 150 BACU007719/1-281 TTELSLLFAF ECELPILITA ILIKSYCALV GLVHGDEPVP TASHQMLSVL ENSP00000328570/1-157 ---------- -------LDA LVKKD--KVV VFLKGTPEQP Q--------- ENSBTAP00000017860/1-158 ---------- -------LDA LVKKD--KVV VFLKGTPEQP Q--------- bmy_21686T0/1-154 ---------- -------LDA LVKKD--RVV VFLKGTPEQP Q--------- ENSTTRP00000014264/1-153 ---------- -------LDA LVKKN--RVV VF-KGTPEQP Q--------- 151 200 BACU007719/1-281 PSKYGMWLAL VPFTHSTQAR ARELFHLTGV SGLAPLGIKD YSNWPTIPQV ENSP00000328570/1-157 ---CGFSNAV VQILRLHGVR DYAAYNVLDD PELRQ-GIKD YSNWPTIPQV ENSBTAP00000017860/1-158 ---CGFSNAV VQILRLHGVR DYAAYNVLDD PQLRQ-GIKD YSNWPTIPQV bmy_21686T0/1-154 ---CGFSNAV VQILRLHGVR DYAAYNVLDD PQLRQ-GIKD YSNWPTIPQV ENSTTRP00000014264/1-153 ---CGFSNAV VQILRLHGVR DYAAYNVLDD PQLRQ-GIKD YSNWPTIPQV 201 250 BACU007719/1-281 YLNGEFVGGC DILLQMHQNG DLVEELKKLG IRSALLDEKK DQDSKLMTPM ENSP00000328570/1-157 YLNGEFVGGC DILLQMHQNG DLVEELKKLG IHSALLDEKK DQDSK----- ENSBTAP00000017860/1-158 YLNGEFVGGC DILLQMHQNG DLVEELKKLG IRSALLDDTK DQDSK----- bmy_21686T0/1-154 YLNGEFVGGC DILLQMHQNG DLVEELKKLG IRSALLDEKK DQDSK----- ENSTTRP00000014264/1-153 YLNGEFVGGC DILLQMHQNG DLVEELKKLG IRSALLDEKK DQDSK----- 251 300 BACU007719/1-281 EMAVDGGEEG KERRTAGSRK EGTEWLALTY PSG ENSP00000328570/1-157 ---------- ---------- ---------- --- ENSBTAP00000017860/1-158 ---------- ---------- ---------- --- bmy_21686T0/1-154 ---------- ---------- ---------- --- ENSTTRP00000014264/1-153 ---------- ---------- ---------- ---