KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 17:03:04 2014 Check: 00 .. Name: ENSBTAP00000017877/1-633 Len: 644 Check: 1702 Weight: 1.00 Name: ENSTTRP00000014320/1-633 Len: 644 Check: 6832 Weight: 1.00 Name: bmy_12287T0/1-629 Len: 644 Check: 3761 Weight: 1.00 Name: BACU000602/1-639 Len: 644 Check: 3516 Weight: 1.00 // 1 50 ENSBTAP00000017877/1-633 MELAQQAREL GCWAAEEMEV PVAARVPEST LRRLCLGQGA DIWAYVLRHV ENSTTRP00000014320/1-633 MELAQQAREL GCWAAEEMEA PVAARAPEST LRRLCLGQGA DIWAYVLRHV bmy_12287T0/1-629 MELSQQAREL GSWAAEEMEA PVAARAPEST LRRLCLGQGA DIWAYVLRHV BACU000602/1-639 MELSQQAREL GCWAAEEMEA PVAARAPEST LRRLCLGQGA DIWAYVLRHV 51 100 ENSBTAP00000017877/1-633 HSQRNVRKIR GNLLWYGHQD NPEARRKLEL EADVARLRAE ILELDQSLEL ENSTTRP00000014320/1-633 HSQRNVKXXX XXXXXXXXXX SPEARRKLKL EAAVAHLRAE ILELDQSLEL bmy_12287T0/1-629 HNQRNVKKIR GNLLWYGHQD SPEARRKLKL EAAVAHLRAE ILELDQSLEL BACU000602/1-639 HSQRNVKKIR GNLLWYGHQD SPEARRKLKL EAAVAHLRAE ILELDQSLEL 101 150 ENSBTAP00000017877/1-633 MEQETEAQDM AMEQNLQRMQ DTQRRALLLR AQAGAMRRQQ RELQDPMQRL ENSTTRP00000014320/1-633 LERETEAQDM AMEQALQSVQ DTQRRALLLR AQAGAMQRQQ RGLQGPMQQL bmy_12287T0/1-629 LERETEAQDM AMEQALQSMQ DTQRRALLLR AQAGAMRRQQ RGLQGPMQQL BACU000602/1-639 LERETEAQDM AMEQGLQSMQ DTQRRALLLR AQAGAMRRQQ RGLQGPMQQL 151 200 ENSBTAP00000017877/1-633 QNQLKRLQDI ERKAKVDINF GPLISAALGL EPAVL----- HDVRTACSLR ENSTTRP00000014320/1-633 QNQLKHLQDI ERKAKVDINF GPLTSAALSL EPVVL----- GDVRTACSLR bmy_12287T0/1-629 QNQLKHLQDI ERKAKVDINF GPLTSAALSL EPVVLVRVLG HGGKGRCP-- BACU000602/1-639 QNQLKHLQDI ERKAKVDINF GPLTSAALSL EPVVL----- GDVRTACSLR 201 250 ENSBTAP00000017877/1-633 TQFLQSLLSP QAQGGGVLTL QDDHFGTSYQ QWLSSVESLL TNHPPGHVLA ENSTTRP00000014320/1-633 TQFLQKLLMP RAKGGSIPTP RDDLFGTSYQ QWLSSVESLL TNHPPGHILA bmy_12287T0/1-629 ----NGLQPP DP----VPAE APDASGQGRQ H-----STLL TNHPPGHVLA BACU000602/1-639 TQFLQKLLMP RAKGGSIPTP RDDLFGTSYQ QWLSSVETLL TNHPPGHVLA 251 300 ENSBTAP00000017877/1-633 ALQHLAAERE AEIQSLCSVD GLQDMERT-- ----RSQAPN QSDSSQTLPS ENSTTRP00000014320/1-633 ALEHLAAERE AEIQSLCTVD ELQDTELA-- ----RPQAPD QPNSSQALPS bmy_12287T0/1-629 ALEHLAAERE AEIQSLCSVD ELQDTEIASS APILSSQAPD QPNSSQALPS BACU000602/1-639 ALEHLAAERE AEIQSLCSVD ELQDTEIASS APILSSQAPD QPNSSQALPS 301 350 ENSBTAP00000017877/1-633 VVHLIQEGWR SVGELVTQRE PLLKEHQVLT LRLQGLMEKA DRCILGSSER ENSTTRP00000014320/1-633 MVHLIQEGWQ SVAALVTQRG PLLEDHQILT RHLQGLMEQM ERCTMGSSER bmy_12287T0/1-629 MVHLIQEGWQ SVAALVTQRG PLLKDHQILT RHLQGLMEDM ERCTVGSSER BACU000602/1-639 MVHLIQEGWQ SVAALVTQRG PLLEDHQILT RHLQGLMEDM ERCTVGSSER 351 400 ENSBTAP00000017877/1-633 QTLVLGLRVC ALWAELKALR ALSQELEEAT GRRQILLQEL QAKQQRILRW ENSTTRP00000014320/1-633 QALLLGLRSS ALRAELKALH AMSQELEEAA GQRQLLLQEL QAKQQRILHW bmy_12287T0/1-629 QALVLGIRSS ALWAELKALH AMSQELEEAS GQRQLLLQEL QAKQQRILHW BACU000602/1-639 QALVLGIRSS ALWAELKALR AMSQELEEAS GQRQLLLQEL QAKQQRILHW 401 450 ENSBTAP00000017877/1-633 RQLVEETQEQ IRLLIKGNSA SKTRLCRSPE EVLALVQRKV VPMSEAVAPQ ENSTTRP00000014320/1-633 RQLVEETQEQ VRLLIKGNSA SKTSLCQSPG EVLALVRQKV VPTSEMVAPQ bmy_12287T0/1-629 RQLVEETQEQ VRLLIKGNSA SKTSLCRSPG EVLALVRQKV VPTSEMVAPQ BACU000602/1-639 RQLVEETQEQ VRLLIKGNSA SKTSLCRSPG EVLALVQQKV VPTSEMVAPQ 451 500 ENSBTAP00000017877/1-633 SQELVRCLEQ EAQHLPHLPL GPLLQHSPGG LQPLPTILPS IHQLHPASPR ENSTTRP00000014320/1-633 SQELLRCLEE GAQHLPHLLL GTLLRHSPGG LQPLRTVLPS IHQLHPASPR bmy_12287T0/1-629 SQELLRCLEE EAQHLPHLLL GTLLRHSPGG LQPLPTVLPS IHQLHPASPR BACU000602/1-639 SQELLRCLEE EAQHLPHLLL GTLLRHSPEG LQPLPTVLPS IHQLHPASPR 501 550 ENSBTAP00000017877/1-633 GSSLIALSHT LGLPAGKAPE LLLPRAASLR QDLLFLQDQQ SLRRWYLLHM ENSTTRP00000014320/1-633 GSSLIVLSHT LGLPAGKAPE LLLPKAASLR QDLLFLQDQR SLRCWYLLHM bmy_12287T0/1-629 GSSLIVLSHT LGLPAGKAPE LLLPKAASLR QDLLFLQDQR SLRCWYLLHM BACU000602/1-639 GSSLIVLSHT LGLPAGKAPE LLLPKAASLR QDLLFLQDQR SLRCWYLLHM 551 600 ENSBTAP00000017877/1-633 KTNLPPGPST QELLRIQESQ EKEQKESLGQ ALKRLENLLK QALKRVPELQ ENSTTRP00000014320/1-633 KTSLPPGPST RELLQIWASQ EEEQKENLGQ ALKRLENLLK QALKRIPELQ bmy_12287T0/1-629 KTSLPPGPST QELLQIRASQ EKEQKENLGR ALKRLESLLE QALKRIPELQ BACU000602/1-639 KTSLPPGPST QELLQIRASQ EKEQKENLGR ALKRLESLLK RALKRIPELQ 601 650 ENSBTAP00000017877/1-633 GVVGDWWEQP GQAALSRELC QGLSLSQWQL RWVQAQGALQ QLCR ENSTTRP00000014320/1-633 GVVGDWWEQP GQAALSGELC QGLSLPQWQL RWIQAQGALQ QLCR bmy_12287T0/1-629 GVVGDWWEQP GQAALSGELC QGLSLPQWQL RWIQAQGALQ QLCR BACU000602/1-639 GVVGDWWEQP GQAALSGELC QGLSLPQWQL RWIQAQGALQ QLCR