KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:03:05 2014 Check: 00 .. Name: BACU000432/1-601 Len: 1132 Check: 4719 Weight: 1.00 Name: ENSP00000348828/1-871 Len: 1132 Check: 7572 Weight: 1.00 Name: ENSBTAP00000017878/1-870 Len: 1132 Check: 9097 Weight: 1.00 Name: bmy_18986T0/1-648 Len: 1132 Check: 7574 Weight: 1.00 Name: ENSTTRP00000016005/1-870 Len: 1132 Check: 6146 Weight: 1.00 // 1 50 BACU000432/1-601 MDGKSEVDFS SNSLTTLWRR RSAPQP-QLL GRSKPRPQSY QSPSGLLITD ENSP00000348828/1-871 MDGESEVDFS SNSITPLWRR RSIPQPHQVL GRSKPRPQSY QSPNGLLITD ENSBTAP00000017878/1-870 MDTESEVDFS SNSLTPLWRR RSTPQL-QLL GRSKPRPQSY QSPSGLLITD bmy_18986T0/1-648 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000016005/1-870 MDGKTEVDFS SNNLTPLWRR RSTPQP-QLL GRSKPRPQSY QSPSGLLITD 51 100 BACU000432/1-601 FPVEDRGTLP AAQTPAQVPT ASDGRTIQRS PLLLCAHRRL VTNGRTVSPE ENSP00000348828/1-871 FPVEDGGTLL AAQIPAQVPT ASDSRTVHRS PLLLGAQRRA VANGGTASPE ENSBTAP00000017878/1-870 FPVEDRETLP AAQTLAEVPG ASDGRTVQRS PLLLCAHRRA VTNGRTVSQE bmy_18986T0/1-648 ---------- ---------- ------MSNR QLKVC----- ---------- ENSTTRP00000016005/1-870 FPVEDRGKPP AAQTPAQVPT ASDGRTIQRS PLLLCAHRRL VTNGRTVSPE 101 150 BACU000432/1-601 YRAVSPRLRR PKSPREPRAA SGGYSKSPAN GTATSLAQQP ---LHRPRTP ENSP00000348828/1-871 YRAASPRLRR PKSPKLPKAV PGGSPKSPAN GAVTLPAPPP PPVLRPPRTP ENSBTAP00000017878/1-870 YRAVSPRLRR PKSPQVPRVA SGGSPKSPAN GTVTKPAPQQ ---LHPPRTP bmy_18986T0/1-648 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000016005/1-870 YRAVSPRLRR PKSPQEPRAA SGGYPKSPAN GTATSPAQLP ---LHRPRTP 151 200 BACU000432/1-601 HAPGPCSPEG DRVGFPASPL LSPAANALTP NTASPGARSL SGQMAKDPER ENSP00000348828/1-871 NAPAPCTPEE DLTGLTASPV PSPTANGLAA NNDSPGSGSQ SGRKAKDPER ENSBTAP00000017878/1-870 RAPSPCSPEG DKTGFPTSPL PSPAANGLSP NISSQGAGSL SGSMAKDPER bmy_18986T0/1-648 ---------- ---------- -------ICE NSEPPVAGD- ---------- ENSTTRP00000016005/1-870 HASAACSPEG DRAGFPASPL LSPAASALIP NTASPGARSL SGQMAKDPER 201 250 BACU000432/1-601 GPSRLSPAPH KRSLEQKLPL QRLPSQENEL LENPSVVLST NSPAALKVGK ENSP00000348828/1-871 G---LFPGPQ KSSSEQKLPL QRLPSQENEL LENPSVVLST NSPAALKVGK ENSBTAP00000017878/1-870 GPSRLSPSLP KRSLEQKLPL QRLPSPENEL LENPSVVLST NSPAALKVGK bmy_18986T0/1-648 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000016005/1-870 GPSRLSPAPH KRSLEQKLPL QRLPSQENEL LENPSVVLST NSPAALKVGK 251 300 BACU000432/1-601 QQIIPKSLAS EIKISKSNSQ NVEPHRRLLK VRSMVEGLGA PLGPAEDEGE ENSP00000348828/1-871 QQIIPKSLAS EIKISKSNNQ NVEPHKRLLK VRSMVEGLGG PLGHAGEESE ENSBTAP00000017878/1-870 QQIIPKSLAS EIKISKSNSL NVEPHKRLLK VRSMVEGLGA PLGPAEDEGE bmy_18986T0/1-648 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000016005/1-870 QQIIPKSLAS EIKISKSNSQ NVEPHKRLLK VRSMVEGLGA PLGPAEDEGE 301 350 BACU000432/1-601 AENDLDSPGS LRRGLRSTSY RRAVVSGVDF DSPTTSKKKN RMSQPILKAV ENSP00000348828/1-871 VDNDVDSPGS LRRGLRSTSY RRAVVSGFDF DSPTSSKKKN RMSQPVLKVV ENSBTAP00000017878/1-870 AEHDLDSPGS LRRGLRSTSY RRAVVSGVDF DSPGTSKKKN RMSQPVLKAV bmy_18986T0/1-648 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000016005/1-870 AENDLDSPGS LRRGLRSTSY RRAVVSGVDF DSPTTSKKKN RMSQPILKAV 351 400 BACU000432/1-601 MEDKEKFSSL GRIKKKMLKE QGTFDGEENA VLYQNYKEKA LDIDSDEESE ENSP00000348828/1-871 MEDKEKFSSL GRIKKKMLKG QGTFDGEENA VLYQNYKEKA LDIDSDEESE ENSBTAP00000017878/1-870 MEDKEKFSSL GRIKKKMLKG QGTFDGEENA VLYQNYKEKA LDIDSDEESE bmy_18986T0/1-648 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000016005/1-870 MEDKEKFSSL GRIKKKMLKG QGTFDGEENA VLYQNYKEKA LDIDSDEESE 401 450 BACU000432/1-601 PKEQKSGEKI VIHHKPLRST WSQLSAVKRN GLSQTVSQEE RKRQEAIFEV ENSP00000348828/1-871 PKEQKSDEKI VIHHKPLRST WSQLSAVKRK GLSQTVSQEE RKRQEAIFEV ENSBTAP00000017878/1-870 PKEQKSDEKI VIHHKPLRST WSQLSAVKRN GLSQTVSQEE RKRQEAIFEV bmy_18986T0/1-648 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000016005/1-870 PKEKKSDEKI VVHHKPLRPT WSQLSAVKRN GLSQTVSQEE RKRQEAIFEV 451 500 BACU000432/1-601 ISSEHSYLLS LEILIRMFKN SKALSDTMTK TESHHLFSNI TDVCEASKK- ENSP00000348828/1-871 ISSEHSYLLS LEILIRMFKN SKELSDTMTK TERHHLFSNI TDVCEASKKF ENSBTAP00000017878/1-870 ISSEHSYLLS LEILIRMFKN SKALSDTMTK TESHHLFSNI TDVCEASKKF bmy_18986T0/1-648 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000016005/1-870 ISSEHSYLLS LEILIRMFKN SKALSDTMTK TESHHLFSNI TDVCEASKKF 501 550 BACU000432/1-601 ---------- ---------- ---------- ---------- ---------- ENSP00000348828/1-871 FIELEARHQN NIFIDDISDI VEKHTASTFD PYVKYCTNEV YQQRTLQKLL ENSBTAP00000017878/1-870 FTELEARHQN NIFIEDISDI VEKHTTSTFD PYVKYCTNEV YQQRTLQKLL bmy_18986T0/1-648 --ELEARHQN NIFIDDISDI VEKHTASTFD PYVKYCTNEV YQQRTLQKLL ENSTTRP00000016005/1-870 FTELEARHQN NIFIDDISDI VEKHTASTFD PYVKYCTNEV YQQRTLQKLL 551 600 BACU000432/1-601 ---------- ---------- ---------- ---------- ---------- ENSP00000348828/1-871 ATNPSFKEVL SRIESHEDCR NLPMISFLIL PMQRVTRLPL LMDTICQKTP ENSBTAP00000017878/1-870 ATNPSFKEVL SRIESHEDCR NLPMISFLIL PMQRVTRLPL LMDTICQKTP bmy_18986T0/1-648 ATNPSFKEVL SRIESHEDCR NLPMISFLIL PMQRVTRLPL LMDTICQKTP ENSTTRP00000016005/1-870 ATNPSFKEVL SRIESHEDCR NLPMISFLIL PMQRVTRLPL LMDTICQKTP 601 650 BACU000432/1-601 ---------- ---------- ---------- ---------- ---------- ENSP00000348828/1-871 KDSPKYEVCK RALKEVSK-- ---------- ---------- ---------- ENSBTAP00000017878/1-870 KDSPKYEVCK RALKEVSK-- ---------- ---------- ---------- bmy_18986T0/1-648 KDSSKYEVCK RALKEVSKIF GSDAGAEPGG GKFPGNRIVQ LVQSRVWCLR ENSTTRP00000016005/1-870 KDSSRYEVCK RALKEVSK-- ---------- ---------- ---------- 651 700 BACU000432/1-601 ---------- CLDSG----- ---------- ---------- ---------- ENSP00000348828/1-871 ------LVRL CNEGARKMER TEMMYTINSQ LEFKIK---- ---------- ENSBTAP00000017878/1-870 ------LVRL CNEGARKMER TEMMYTINSQ LEFKIK---- ---------- bmy_18986T0/1-648 SGAHEMLVRL CNEGARKMER TEMMYTINSQ LEFKIKFLDE YHVLHVLRVN ENSTTRP00000016005/1-870 ------LVRL CNEGARKMER TEMMYTINSQ LEFKIK---- ---------- 701 750 BACU000432/1-601 --AFRLVAPA LWLLVLRGQW RP-TEHPLCV CRRILGQGAY ---------- ENSP00000348828/1-871 --PFPLVSSS RW-LVKRGEL TAYVEDTVLF SRRTSKQQVY FFLFNDVLII ENSBTAP00000017878/1-870 --PFPLVSSS RW-LVKRGEL TAYVEDTVLF SKRTSKQQVY FFLFNDVLII bmy_18986T0/1-648 GRPFPLVSSS RW-LVKRGEL TAYVEDTGLF SKRTSKQQVY FFLFNDVLII ENSTTRP00000016005/1-870 --PFPLVSSS RW-LVKRGEL TAYVEDTVLF SKRTSKQQVY FFLFNDVLII 751 800 BACU000432/1-601 ---------- ---------- ---------- ---------- ---------- ENSP00000348828/1-871 TKKK------ ---------- ---------- ---------- ---------- ENSBTAP00000017878/1-870 TKKK------ ---------- ---------- ---------- ---------- bmy_18986T0/1-648 TKKKRKKFPR DWEDVSNTAI LPASGKKVNP LTIRKKFKVS ISSGLLVSHR ENSTTRP00000016005/1-870 TKKK------ ---------- ---------- ---------- ---------- 801 850 BACU000432/1-601 ---------- ---------- ---------- ---------- ---------- ENSP00000348828/1-871 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000017878/1-870 ---------- ---------- ---------- ---------- ---------- bmy_18986T0/1-648 IDSLFCQISE GYVIGLTTLD EKISECHHGH SLLSSGYARE EASVMSDSLL ENSTTRP00000016005/1-870 ---------- ---------- ---------- ---------- ---------- 851 900 BACU000432/1-601 ---------- ---------- ---------- ---------- ---------- ENSP00000348828/1-871 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000017878/1-870 ---------- ---------- ---------- ---------- ---------- bmy_18986T0/1-648 DLPISSVSRT MGSGCPVAAR EVPGWRIWRS VVTGMGAFWS CCGSSAIFLG ENSTTRP00000016005/1-870 ---------- ---------- ---------- ---------- ---------- 901 950 BACU000432/1-601 ---------- ---------- ---------- ---------- ---------- ENSP00000348828/1-871 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000017878/1-870 ---------- ---------- ---------- ---------- ---------- bmy_18986T0/1-648 DTESQQILTL PTNVTLFSTI CYFLNNEIGS EELEGLLPIC QILALKESSR ENSTTRP00000016005/1-870 ---------- ---------- ---------- ---------- ---------- 951 1000 BACU000432/1-601 ---------- ---------- ---------- ---------- ---------- ENSP00000348828/1-871 -----SEESY NVNDYSLRDQ LLVESCDNEE LNSSPGKNSS TMLYSRQSSA ENSBTAP00000017878/1-870 -----SEESY NVNDYSLRDQ LLVESCDSEE LNSSPGKNSS TMLYSRQNSA bmy_18986T0/1-648 TRQGGSEESY NVNDYSLRDQ LLVESCDSEE VNSSLGKNSS AVLYSRQNSA ENSTTRP00000016005/1-870 -----SEESY NVNDYSLRDQ LLVESCDSEE LNSSPGKNSS TVLYSRQNSA 1001 1050 BACU000432/1-601 ---------- ---------- ---------P KW-AGLGHAG GYGPRAPDIW ENSP00000348828/1-871 SHLFTLTVLS NHANEKVEML LGAETQSERA RWITALGHSS GKPP--ADRT ENSBTAP00000017878/1-870 SHLFTLTVLS NHANEKVEML LGAETQSERA RWITALGHSS GKHP--PDRT bmy_18986T0/1-648 SHLFTLTVLS NHVNEKVEML LGAETQSERA RWITALGHSS GKQP--PDRT ENSTTRP00000016005/1-870 SHLFTLTVLS NHVNEKVEML LGAETQSERA RWITALGHSS GKQP--PDRT 1051 1100 BACU000432/1-601 AITCFFAFLH CFCRLQESVD FELSH----- ---------G DLNLDNDPGW ENSP00000348828/1-871 SLTQVEIVRS FTAKQPDELS LQVADVVLIY QRVSDGWYEG ERLRDGERGW ENSBTAP00000017878/1-870 SLTQVEIIRS FTAKQPDELS LQVADVVLIY QHVSDGWYEG ERLRDGERGW bmy_18986T0/1-648 SLTQVEIIRS FTAKQPDELS LQVADVVLIY QCVSDGWYEG ERLRDGERGW ENSTTRP00000016005/1-870 SLTQVEIIRS FTAKQPDELS LQVADVVLIY QCVSDGWYEG ERLRDGERGW 1101 1150 BACU000432/1-601 DRRKCYQA-- ---------- ---------- -- ENSP00000348828/1-871 FPMECAKEIT CQATIDKNVE RMGRLLGLET NV ENSBTAP00000017878/1-870 FPMECAKEIT CQATIDKNVE RMGRLLGLET NV bmy_18986T0/1-648 FPMECAKEIT CQATIDKNVE RMGRLLGLET NV ENSTTRP00000016005/1-870 FPMECAKEIT CQATIDKNVE RMGRLLGLET NV