KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:03:06 2014 Check: 00 .. Name: ENSP00000384524/1-342 Len: 379 Check: 7899 Weight: 1.00 Name: ENSBTAP00000017887/1-332 Len: 379 Check: 1869 Weight: 1.00 Name: ENSTTRP00000002085/1-362 Len: 379 Check: 2947 Weight: 1.00 Name: BACU000604/1-339 Len: 379 Check: 1133 Weight: 1.00 Name: bmy_12289T0/1-300 Len: 379 Check: 7703 Weight: 1.00 // 1 50 ENSP00000384524/1-342 MDLWNWDEAS PQEVPPGNKL AGL------- ---------- ---------- ENSBTAP00000017887/1-332 MDLWNWDEVS PQEVPLGHRM SGL------- ---------- ---------- ENSTTRP00000002085/1-362 MDLWNWDEAS AQEVPLGSRL SGLGRLLGLR QCVWGGCSGG ASTDPDGALT BACU000604/1-339 MDLWNWDEAS PQEVPLGSRL SGL------- ---------- ---------- bmy_12289T0/1-300 MDLWNWDEAS PQEVPLGSRL SGL------- ---------- ---------- 51 100 ENSP00000384524/1-342 ----EGAKLG FCFPDLALQG DTPTATAETC WKGTSSSLA- -----SFPQL ENSBTAP00000017887/1-332 ----EGAELN FYIPELAVQA D--TLTEDTC WKATTLFLA- -----GLPQP ENSTTRP00000002085/1-362 FLPAEGAELD FYFPELALQG D--TLTAETG WKTTSSLS-- -----GLPQP BACU000604/1-339 ----EGAELD FYFPELALQG D--TLTAETC WKSVCGLGPL SAGEEGLPQP bmy_12289T0/1-300 ---------- ---------- ---------- ---------- -----GLPQP 101 150 ENSP00000384524/1-342 DWGSALLHPE VPWGAEPDSQ ALPWSGDWTD MACTAWDSWS GASQTLGPAP ENSBTAP00000017887/1-332 DWSST-PYPE AAWGAEPAPQ ALPWPGDWTD LPCSGTVSCS GVSQAPGPAT ENSTTRP00000002085/1-362 DWGSALPYPE APWGAEPAPQ ALPWSGDWTD LPCTGSVPWS RVSQALGPAL BACU000604/1-339 DWGSALPYPE APWGAERAPQ ALPWSGDWTD LPCTGSVPWS RVSQALGPAL bmy_12289T0/1-300 DWGSSLPYPE APWGAEPAPQ ALPWSGDWTD LPCTGSVPWS RVSQALGPAL 151 200 ENSP00000384524/1-342 LGPGPIPAAG SEGAAGQNCV PVAGEATSWS RAQAAGSNTS WDCSVGPDGD ENSBTAP00000017887/1-332 W-------TG SEGATGQNYT TSAGSTNSWS RARVASSSTS WDYSIGPDGA ENSTTRP00000002085/1-362 --------GG SEGAAAQNCA TSAESANSWS GAQVAASSTS WDYSVGPDGA BACU000604/1-339 W-------AG SEGAAAQNCA TSAGSANSWS GARVAASSTS WDYSVGPDGA bmy_12289T0/1-300 W-------AG SEGAAAQNCA TSAGSANSWS GARVAASSTS WDYSVGPDGA 201 250 ENSP00000384524/1-342 TYWGSGLGGE PRTDCTISWG GPAGPDCTTS WNPGLHAGGT TSLKRYQSSA ENSBTAP00000017887/1-332 TCWGRSLGGE LCADSTLPWA GPEASDCTTS WDSGLHTDCT SSSKEYQSSD ENSTTRP00000002085/1-362 TYWGKSLGGE PPADSTISWG GPAGSDYTIS WDSGLHTDCT TSSKEYQTSD BACU000604/1-339 TYWGKSLGGE PPADSTSSWG GPAGSDYTIS WDSGLHTDCT TSSKEYQTSD bmy_12289T0/1-300 TYWGKSLGGE PPADSTISWG GPAGSDYTIS WDSGLHTDCT TSSKEYQTSD 251 300 ENSP00000384524/1-342 LTVCSEPSPQ SDRASLARCP KTNHRGPIQL WQFLLELLHD GARSSCIRWT ENSBTAP00000017887/1-332 LTTSSEPTQQ SDRATLARYP KTNHRGPIQL WQFLLELLHD GARRSCIRWT ENSTTRP00000002085/1-362 LTTSSEPSQQ SDRATLACYP KANHRGPIQL WQFLLELLHD GARSSCIRWT BACU000604/1-339 LTTSSEPSQQ SDRVTLACYP KANHRGPIQL WQFLLELLHD GARSSCIRWT bmy_12289T0/1-300 LTTSSEPSQQ SDRATLACYP KANHRGPIQL WQFLLELLHD GARSSCIRWT 301 350 ENSP00000384524/1-342 GNSREFQLCD PKEVARLWGE RKRKPGMNYE KLSRGLRYYY RRDIVRKSGG ENSBTAP00000017887/1-332 GNSREFQLCD PKEVARLWGE RKRKPGMNYE KLSRGLRYYY RRDIVRKSGG ENSTTRP00000002085/1-362 GNSREFQLCD PKEVARLWGE RKRKPGMNYE KLSRGLRYYY RRDIVRKSGG BACU000604/1-339 GNSREFQLCD PKEVARLWGE RKRKPGMNYE KLSRGLRYYY RRDIVRKSGG bmy_12289T0/1-300 GNSREFQLCD PKEVARLWGE RKRKPGMNYE KLSRGLRYYY RRDIVRKSGG 351 400 ENSP00000384524/1-342 RKYTYRFGGR VPSLAYPDCA GGGRGAETQ ENSBTAP00000017887/1-332 RKYTYRFGGR LPSLVYPDLM GGGLEAPTQ ENSTTRP00000002085/1-362 RKYTYRFGGR VPGLVYPDCV ESGQGATTQ BACU000604/1-339 RKYTYRFGGR VPGLVYPDCV ESGQGATTQ bmy_12289T0/1-300 RKYTYRFGGR VPGLVYPDCV ESGQGATTQ