KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:03:07 2014 Check: 00 .. Name: bmy_22082T0/1-827 Len: 1097 Check: 3371 Weight: 1.00 Name: ENSTTRP00000009317/1-982 Len: 1097 Check: 7671 Weight: 1.00 Name: ENSP00000411418/1-988 Len: 1097 Check: 5296 Weight: 1.00 Name: BACU014936/1-989 Len: 1097 Check: 4287 Weight: 1.00 Name: ENSBTAP00000017891/1-982 Len: 1097 Check: 5484 Weight: 1.00 // 1 50 bmy_22082T0/1-827 MAIECR---- ---------- ---------- ---------- GN-------- ENSTTRP00000009317/1-982 MAADSEPESE VFEITDFTTA SEWERFISKI EEVLNDWKLI GNSLAKPLEK ENSP00000411418/1-988 MAADSEPESE VFEITDFTTA SEWERFISKV EEVLNDWKLI GNSLGKPLEK BACU014936/1-989 MAADSEPESE VFEITDFTTA SEWERFISKI EEVLNDWKLI GNSLGKPLEK ENSBTAP00000017891/1-982 MAADSEPESE VFEITDFTTA SEWERFISKV EEVLNDWKLI GNSVGKPLEK 51 100 bmy_22082T0/1-827 ---------- ---------- ---------- ---------- ------IPGN ENSTTRP00000009317/1-982 GIFTSGTWEE KSDEISFADF KFSITHHYLV QEFPDKEGKD EVLEDVIPQS ENSP00000411418/1-988 GIFTSGTWEE KSDEISFADF KFSVTHHYLV QESTDKEGKD ELLEDVVPQS BACU014936/1-989 FIFTSGTWEE KSDEISFADF KFSITHHYLV QESPDKEGKD EVLEDVIPQS ENSBTAP00000017891/1-982 GIFTSGTWEE KSDEISFADF KFSVTHHYLV QESTDKEAKD EVLEDVIPQP 101 150 bmy_22082T0/1-827 GNKVLISRGD EP-----LKR RYGLREFVVI APAANNDAVL SESKCNLLLS ENSTTRP00000009317/1-982 MQDLLCMNND FPPRAHCLVR WYGLREFVVI APAANNDAVL SESKCNLLLS ENSP00000411418/1-988 MQDLLGMNND FPPRAHCLVR WYGLREFVVI APAAHSDAVL SESKCNLLLS BACU014936/1-989 MQDLLCMNND FPPRAHCLVR WYGLREFVVI APAANNDAVL SESKCNLLLS ENSBTAP00000017891/1-982 MQDLLCMNND FPPRAHCLVR WYGLREFVVI APAANNDAVL SESKCNLLLS 151 200 bmy_22082T0/1-827 SV-------- -QVPLFVQIH HKWRRLYVGE CQGPGVRTDF EMVHLRKVPN ENSTTRP00000009317/1-982 SVSVALGNTG CQVPLFVQIH QKWRRTYVGE CQGPGVRTDF EMVHLRKVPN ENSP00000411418/1-988 SVSIALGNTG CQVPLFVQIH HKWRRMYVGE CQGPGVRTDF EMVHLRKVPN BACU014936/1-989 SVSVALGNTG CQVPLFVQIH HKWRRMYVGE CQGPGVRTDF EMVHLRKVPN ENSBTAP00000017891/1-982 SVSIALGNTG CQVPLFVQIH HKWRRMYVGE CQGPGVRTDF EMVHLRKVPN 201 250 bmy_22082T0/1-827 QYTHLSGLLD IFKSKIGCPL TPLPPVSIAI RFTYVLQDWQ QYFWPQQPPD ENSTTRP00000009317/1-982 QYTHLSGLLD IFKSKIGCTL TPLPPVSIAI RFTYVLQDWQ QYFWPQQPPD ENSP00000411418/1-988 QYTHLSGLLD IFKSKIGCPL TPLPPVSIAI RFTYVLQDWQ QYFWPQQPPD BACU014936/1-989 QYTHLSGLLD IFKSKIGCTL TPLPPVSIAI RFTYVLQDWQ QYFWPQQPPD ENSBTAP00000017891/1-982 QYTHLSGLLD IFKSKIGCPL TPLPPVNIAI RFTYVLQDWQ QYFWPQQPPD 251 300 bmy_22082T0/1-827 IDALVGGEVG GLEFGKLPFG ACEDPI---- ---------- ---------S ENSTTRP00000009317/1-982 IDALVGGEVG GLEFGKLPFG ACEDPISELH LATTWPHLTE GIIVDNDVYS ENSP00000411418/1-988 IDALVGGEVG GLEFGKLPFG ACEDPISELH LATTWPHLTE GIIVDNDVYS BACU014936/1-989 IDALVGGEVG GLEFGKLPFG ACEDPISELH LATTWPHLTE GIIVDNDVYS ENSBTAP00000017891/1-982 IDALVGGEVG GLEFGKLPFG ACEDPISELH LATTWPHLTE GIIVDNDVYS 301 350 bmy_22082T0/1-827 DLDPVQAPHW SVRVRKADNP QCLLGDFVTE FFKICRRKES TDEILGRSTF ENSTTRP00000009317/1-982 DLDPIQAPHW SVRVRKADNP QCLLGDFVTE FFKICRRKES TDEILGRSTF ENSP00000411418/1-988 DLDPIQAPHW SVRVRKAENP QCLLGDFVTE FFKICRRKES TDEILGRSAF BACU014936/1-989 DLDPVQAPHW SVRVRKADNP QCLLGDFVTE FFKICRRKES TDEILGRSTF ENSBTAP00000017891/1-982 DLDPMQAPHW SVRVRKADNP QCLLGDFVTE FFKICRRKES TDEILGRSTF 351 400 bmy_22082T0/1-827 EEEGREVADI THALSKLTEP APVPIHKLSV SNMVHTAKKK IRKQRGVEES ENSTTRP00000009317/1-982 EEEGREAADI THALSKLTEP APVPIHKLSV SNMVHTAKKK IRKQRGVEES ENSP00000411418/1-988 EEEGKETADI THALSKLTEP ASVPIHKLSV SNMVHTAKKK IRKHRGVEES BACU014936/1-989 EEEGREVADI THALSKLTEP APVPIHKLSV SNMVHTAKKK IRKQRGAEES ENSBTAP00000017891/1-982 EEEGREIADI THALSKLTEP APVPIHKLSV SNMVHTAKKK IRKHRGVEES 401 450 bmy_22082T0/1-827 PLNND----- --FLFPDAAS EKPLDGTSST DNSNPTLESE EYNLYNQFKS ENSTTRP00000009317/1-982 PLNNDVLNTI LLFLFPDAAS EKPLDGTSST DNSNPPLESE EYNLYNQFKS ENSP00000411418/1-988 PLNNDVLNTI LLFLFPDAVS EKPLDGTTST DNNNPPSESE DYNLYNQFKS BACU014936/1-989 PLNNDVLNTI LLFLFPDAAS EKPLDGTSST DNSNPPLESE EYNLYNQFKS ENSBTAP00000017891/1-982 PLNNDVLNTI LLFLFPDAAS EKPLDGTSST DNSNPPLESE EYNLYNQFKS 451 500 bmy_22082T0/1-827 APSGSLTYKL ALCLCMINFY HGGLKGVAHL WQEFVLEMRF RWENNFLIPG ENSTTRP00000009317/1-982 APSDSLTYKL ALCLCMINFY HGGLKGVAHL WQEFVLEMRF RWENNFLIPG ENSP00000411418/1-988 APSDSLTYKL ALCLCMINFY HGGLKGVAHL WQEFVLEMRF RWENNFLIPG BACU014936/1-989 APSDSLTYKL ALCLCMVNFY HGGLKGVAHL WQEFVLEMRF RWENNFLIPG ENSBTAP00000017891/1-982 APSDSLTYKL ALCLCMINFY HGGLKGVAHL WQEFVLEMRF RWENNFLIPG 501 550 bmy_22082T0/1-827 LASGPPDLRC CLLHQKLQML NCCIERKKAR DEGRKTSPSD NVTNTYSGDA ENSTTRP00000009317/1-982 LASGPPDLRC CLLHQKLQML NCCIERKKAR DEGRKTSPSD NVTNTYSGDA ENSP00000411418/1-988 LASGPPDLRC CLLHQKLQML NCCIERKKAR DEGKKTSASD -VTNIYPGDA BACU014936/1-989 LASGPPDLRC CLLHQKLQML NCCIERKKAR DEGRKTNPSD NVTNTYSGDA ENSBTAP00000017891/1-982 LASGPPDLRC CLLHQKLQML NCCIERKKAR DEGRKTSPSD NVTNTYSGDA 551 600 bmy_22082T0/1-827 GKSGDQLGPD NLKDMDKEKG EVGKSWDSWS DSEEEFFECL SDTEELKGNG ENSTTRP00000009317/1-982 GKSGDQLGPD NIKDMDKEKG EVGKSWDSWS DSEEEFFECL SDTEELKGNG ENSP00000411418/1-988 GKAGDQLVPD NLKETDKEKG EVGKSWDSWS DSEEEFFECL SDTEELKGNG BACU014936/1-989 GKSGDQLGPD NLKDMDKEKG EVGKSWDSWS DSEEEFFECL SDTEELKGNG ENSBTAP00000017891/1-982 GKSGDQLGPD NLRETDKDKG EVGKSWDSWS DSEEEFFECL SDTEELKGNG 601 650 bmy_22082T0/1-827 QESGKKGGPK EMASLKPEGR LHQHGKLTLL HNGEPLYIPV TQVAVIYDIS ENSTTRP00000009317/1-982 QESGKKGGPK EMASLKPEGR LHQHGKLNLL HNGEPLYIPV T--------- ENSP00000411418/1-988 QESGKKGGPK EMANLRPEGR LYQHGKLTLL HNGEPLYIPV T--------- BACU014936/1-989 QESGKKGGPK EMASLKPEGR LHQHGKLTLL HNGEPLYIPV T--------- ENSBTAP00000017891/1-982 QESGKKGGPK EMASLKPEGR LHQHGKLTLL HNGEPLYIPV T--------- 651 700 bmy_22082T0/1-827 FVVCLTGLIF LLLHIILKLK PLKFQTLEIS LKCAVNPLPL HQKKKKFALA ENSTTRP00000009317/1-982 ---------- ---------- ---------- ---------- ---------- ENSP00000411418/1-988 ---------- ---------- ---------- ---------- ---------- BACU014936/1-989 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000017891/1-982 ---------- ---------- ---------- ---------- ---------- 701 750 bmy_22082T0/1-827 AVLFEVTIKI YNVSDSPNSA FSKKSYSRAL SFCASQEPAP MTEDLLEEQS ENSTTRP00000009317/1-982 ---------- ---------- ---------- -----QEPAP MTEDLLEEQS ENSP00000411418/1-988 ---------- ---------- ---------- -----QEPAP MTEDLLEEQS BACU014936/1-989 ---------- ---------- ---------- -----QEPAP MTEDLLEEQS ENSBTAP00000017891/1-982 ---------- ---------- ---------- -----QEPAP MTEDLLEEQS 751 800 bmy_22082T0/1-827 EVLAKLGTSA EGAHLRARMQ SACLLSDMES FKAANPGCFL EDFVRWYSPR ENSTTRP00000009317/1-982 EVLAKLGTSA EGAHLRARMQ SACLLSDMES FKAANPGCFL EDFVRWYSPR ENSP00000411418/1-988 EVLAKLGTSA EGAHLRARMQ SACLLSDMES FKAANPGCSL EDFVRWYSPR BACU014936/1-989 EVLAKLGTSA EGAHLRARMQ SACLLSDMES FKAANPGCFL EDFVRWYSPR ENSBTAP00000017891/1-982 EVLAKLGTSA EGAHLRARMQ SACLLSDMES FKAANPGCFL EDFVRWYSPR 801 850 bmy_22082T0/1-827 DYIEEEVIDE KGNMG-EGRG NSELLVRKIT W--------- ---------- ENSTTRP00000009317/1-982 DYIEEEVIDE KGNMVLKGEL SARMKIPSNM WVEAWETAKP IPARRQRRLF ENSP00000411418/1-988 DYIEEEVIDE KGNVVLKGEL SARMKIPSNM WVEAWETAKP IPARRQRRLF BACU014936/1-989 DYIEEEVIDE KGNMVLKGEL SARMKIPSNM WVEAWETAKP IPARRQRRLF ENSBTAP00000017891/1-982 DYIEEEVVDE KGNMVLKGEL SARMKIPSNM WVEAWETAKP IPARRQRRLF 851 900 bmy_22082T0/1-827 ---------- ---------- ---------- ---------- KSLENISSVK ENSTTRP00000009317/1-982 DDTREAEKVL HYLAVQKPAD LARHLLPCVI HAAVLKVKEE ESLENISSVK ENSP00000411418/1-988 DDTREAEKVL HYLAIQKPAD LARHLLPCVI HAAVLKVKEE ESLENISSVK BACU014936/1-989 DDTREAEKVL HYLAVQKPAD LARHLLPCVI HAAILKVKEE ESLENISSVK ENSBTAP00000017891/1-982 DDTREAEKVL HYLAVQKPAD LARHLLPCVI HAAVLKVKEE ESLENISSVK 901 950 bmy_22082T0/1-827 KIIKQIISHS SKVLHFPNPE DKKLEEIIHQ ITNVEAIIAR ARSLKAKFGT ENSTTRP00000009317/1-982 KIIKQIISHS SKVLHFPNPE DKKLEEIIHQ ITNVEAIIAR ARSLKAKFGT ENSP00000411418/1-988 KIIKQIISHS SKVLHFPNPE DKKLEEIIHQ ITNVEALIAR ARSLKAKFGT BACU014936/1-989 KIIKQIISHS SKVLHFPNPE DKKLEEIIHQ ITNVEAIIAR ARSLKAKFGT ENSBTAP00000017891/1-982 KIIKQIISHS SKVLHFPNPE DKKLEEIIHQ ITNVEAIIAR ARSLKAKFGT 951 1000 bmy_22082T0/1-827 EKCEQEEEKE DLERDGLLKK FTKTVERQFV SCLLEQPEVL VVGAGRGHAG ENSTTRP00000009317/1-982 EKCEQEEEKE DLEX------ --------XX XXXXXXXXXX XXXXXXXXXX ENSP00000411418/1-988 EKCEQEEEKE DLER------ --------FV SCLLEQPEVL VTGAGRGHAG BACU014936/1-989 EKCEQEEEKE DLER------ --------FV SCLLEQPEVL VVGAGRGHAG ENSBTAP00000017891/1-982 EKCEQEEEKE DLER------ --------FV SCLLEQPEVL VVGAGRGHAG 1001 1050 bmy_22082T0/1-827 RIIHKLFVNA QR-------- ---------- ---------- ---------- ENSTTRP00000009317/1-982 XXXXXXXXXX XX-------A AAMAPPEEDL KRMVPPEEKR QNLAADFPPA ENSP00000411418/1-988 RIIHKLFVNA QRLTESSDEA AAMTPPEEEL KRMGSPEERR QNSVSDFPPP BACU014936/1-989 RIIHKLFVNA QRLTESSDEA AAMAPPEEDL KRMVPPEERR QNLAADFPPT ENSBTAP00000017891/1-982 RIIHKLFVNA QR-------A ATMTPAEEEL KRMGPPEEKR QNLAADFPPP 1051 1100 bmy_22082T0/1-827 ---------- ---------- -PTVILHI-- ---------- ------- ENSTTRP00000009317/1-982 AGRELILRTT VPRPAPYSRA LPQRMYSVLT KEDFRLAGAF SSDTSFF ENSP00000411418/1-988 AGREFILRTT VPRPAPYSKA LPQRMYSVLT KEDFRLAGAF SSDTSFF BACU014936/1-989 AGRELILRTT VPRPAPYSRA LPQRMYSVLT KEDFRLAGAF SSDTSFF ENSBTAP00000017891/1-982 AGRELILRTA VPRPAPYSRA LPQRMYSVLT KEDFRLAGAF SSDTSFF