KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:03:12 2014 Check: 00 .. Name: ENSTTRP00000007050/1-1252 Len: 1418 Check: 6346 Weight: 1.00 Name: ENSP00000359077/1-1257 Len: 1418 Check: 8098 Weight: 1.00 Name: ENSBTAP00000017906/1-1257 Len: 1418 Check: 950 Weight: 1.00 Name: bmy_18754T0/1-1154 Len: 1418 Check: 4037 Weight: 1.00 Name: BACU011419/1-1345 Len: 1418 Check: 2222 Weight: 1.00 // 1 50 ENSTTRP00000007050/1-1252 MAVALRYLWP LLLCSPCLLI QIPEEFP--- ---------- -GQGV----- ENSP00000359077/1-1257 MVVALRYVWP LLLCSPCLLI QIPEEYE--- ---------- -GHH------ ENSBTAP00000017906/1-1257 MAVALWFLWP LLLCSPCVLI QIPEEYE--- ---------- -GHH------ bmy_18754T0/1-1154 MAVALRYLWP LLLCSPCLLI QIPEEYE--- ---------- -GHH------ BACU011419/1-1345 MALALRYLWP LLLCSPCLLI QIPEEWVPSR TYFFPCQGPL LGWHVSFSLP 51 100 ENSTTRP00000007050/1-1252 ---------- ---------- ---------- ---------- ---------- ENSP00000359077/1-1257 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000017906/1-1257 ---------- ---------- ---------- ---------- ---------- bmy_18754T0/1-1154 ---------- ---------- ---------- ---------- ---------- BACU011419/1-1345 LSLAARISQM KDTTCRPLSI LSRPAFAPAA SGQASSFSPR NPIAVGAYKA 101 150 ENSTTRP00000007050/1-1252 ---------- ---------- --AMEPPVIT EQSPRRVVVF PTDDISLKCE ENSP00000359077/1-1257 ---------- ---------- --VMEPPVIT EQSPRRLVVF PTDDISLKCE ENSBTAP00000017906/1-1257 ---------- ---------- --VMEPPIIT EQSPRRVVVF PTDDVSLKCE bmy_18754T0/1-1154 ---------- ---------- --VMEPPVIT EQSPRRVVVF PTDDISLKCE BACU011419/1-1345 PDPASLTTEQ AILTTAVPIL SPVMEPPVIT EQSPRRVVVF PTDDISLKCE 151 200 ENSTTRP00000007050/1-1252 ASGKPQVQFR WTRDGVLFKP KEEPGVTVNQ APDSGSFTIT GNNSNFAQSF ENSP00000359077/1-1257 ASGKPEVQFR WTRDGVHFKP KEELGVTVYQ SPHSGSFTIT GNNSNFAQRF ENSBTAP00000017906/1-1257 ASGKPEVQFR WTRDGILFKP REELGMIVNQ VPHSGSFSIT GNSSNFAQSF bmy_18754T0/1-1154 ASGTPEVQFR WTRDGVLFKP KEELGVTVNQ APHSGSFTIT GNNSNFAQSF BACU011419/1-1345 ASGTPEVQFR WTRDGVLFKP KEELGVTVNQ APHSGSFTIT GNNSNFAQSF 201 250 ENSTTRP00000007050/1-1252 QGTYRCFASN KLGTAMSHEI QLMAEGTPKW PKETVRPVEA EEGESVILPC ENSP00000359077/1-1257 QGIYRCFASN KLGTAMSHEI RLMAEGAPKW PKETVKPVEV EEGESVVLPC ENSBTAP00000017906/1-1257 QGTYRCFASN KLGTAMSHEI QLMAEGTPKW PKETVKPVEV EEGESVILPC bmy_18754T0/1-1154 QGAYRCFASN RLGTAMSHEI QLMAEGTPKW PKETVRPVEV EEGESVILPC BACU011419/1-1345 QGAYRCFASN RLGTAMSHEI QLMAEGTPKW PKETVRPVEV EEGESVVLPC 251 300 ENSTTRP00000007050/1-1252 HPPPSAEPLR IYWMNSKILH IKQDERVTMG QNGNLYFANV LTSDNHSDYI ENSP00000359077/1-1257 NPPPSAEPLR IYWMNSKILH IKQDERVTMG QNGNLYFANV LTSDNHSDYI ENSBTAP00000017906/1-1257 HPPPSAEPLR IYWMNSKILH IKQDERVTMG QNGNLYFANV LTSDNHSDYI bmy_18754T0/1-1154 HPPPSAEPLR IYWMNSKILH IKQDERVTMG QNGNLYFANV LTSDNHSDYI BACU011419/1-1345 HPPPSAEPLR IYWMNSKILH IKQDERVTMG QNGNLYFANV LTSDNHSDYI 301 350 ENSTTRP00000007050/1-1252 CHAHFPGTRT IIQKEPIDLR VKATNSMMDR P---LLPIDA STHLAL--GQ ENSP00000359077/1-1257 CHAHFPGTRT IIQKEPIDLR VKATNSMIDR KPRLLFPTNS SSHLVALQGQ ENSBTAP00000017906/1-1257 CHAHFPGTRT IIQKEPIDLR VKATNSMMDR KPHLLFPTNS SSHLVALQGQ bmy_18754T0/1-1154 CHAHFPGTRT IIQKEPIDLR VKATNSMMDR KPRLLFPTNS SSHLVALQGQ BACU011419/1-1345 CHAHFPGTRT IIQKEPIDLR VKATNSMMDR KPRLLFPTNS SSHLVALQGQ 351 400 ENSTTRP00000007050/1-1252 PLALECIAXX XXXXXXXXXR PSGPMPADRV TYQNHNKTLQ LLNVGEEDDG ENSP00000359077/1-1257 PLVLECIAEG FPTPTIKWLR PSGPMPADRV TYQNHNKTLQ LLKVGEEDDG ENSBTAP00000017906/1-1257 PLILECIAEG FPTPTIKWLR PSGPMPADRV TYQNHNKTLQ LLNVGEEDDG bmy_18754T0/1-1154 PLVLECIAEG FPTPTIKWLR PSGPMPADRV TYQNHNKTLQ LLNVGEEDDG BACU011419/1-1345 PLVLECIAEG FPTPTIKWLR PSGPMPADRV TYQNHNKTLQ LLNVGEEDDG 401 450 ENSTTRP00000007050/1-1252 EYRCLAENSL GSDQHAYYVT VEAAPYWLHK PQSHLYGPGE TARLDCQVQG ENSP00000359077/1-1257 EYRCLAENSL GSARHAYYVT VEAAPYWLHK PQSHLYGPGE TARLDCQVQG ENSBTAP00000017906/1-1257 EYRCLAENSL GSDRHAYYVT VEAAPYWLHK PQSHLYGPGE TARLDCQVQG bmy_18754T0/1-1154 EYRCLAENSL GSDRHAYYVT VEAAPYWLHK PQSHLYGPGE TARLDCQVQG BACU011419/1-1345 EYRCLAENSL GSDRHAYYVT VEAAPYWLHK PQSHLYGPGE TARLDCQVQG 451 500 ENSTTRP00000007050/1-1252 RPQPEVTWRI NGIPVEELAK DQKYRIHHGA LILSNVQPSD TMVTQCEARN ENSP00000359077/1-1257 RPQPEVTWRI NGIPVEELAK DQKYRIQRGA LILSNVQPSD TMVTQCEARN ENSBTAP00000017906/1-1257 RPQPEVTWRI NGIPVEELGK DQKYRIHHGA LVLSNLQPSD TMVTQCEARN bmy_18754T0/1-1154 RPQPEVTWRI NGIPVEELAK DQKYRIHHGA LILSNVQPSD TMVTQCEARN BACU011419/1-1345 RPQPEVTWRI NGIPVEELAK DQKYRIHHGA LILSNVQPSD TMVTQCEARN 501 550 ENSTTRP00000007050/1-1252 RHGLLLANAY IYVVELPGQI LTPXXXXYMA VQGSTAYLLC KAFGAPVPSV ENSP00000359077/1-1257 RHGLLLANAY IYVVQLPAKI LTADNQTYMA VQGSTAYLLC KAFGAPVPSV ENSBTAP00000017906/1-1257 RHGLLLANAY IYVVELPAKI LTPDNETYMA VQGSTAYLLC KAFGAPVPSV bmy_18754T0/1-1154 RHGLLLANAY IYVVELPAKI LTPDNETYMA VQGSTAYLLC KAFGAPVPSV BACU011419/1-1345 RHGLLLANAY IYVVELPAKI LTPDNETYMA VQGSTAYLLC KAFGAPVPSV 551 600 ENSTTRP00000007050/1-1252 QWLDREGKTV LQDERFFPYT NGTLGIRDLQ ANDTGHYFCQ AANDQNNVTI ENSP00000359077/1-1257 QWLDEDGTTV LQDERFFPYA NGTLGIRDLQ ANDTGRYFCL AANDQNNVTI ENSBTAP00000017906/1-1257 QWLDREGKTV LQDERFFPYT NGTLGIRDLQ TNDTGHYFCQ AANDQSNVTI bmy_18754T0/1-1154 QWLDGEGKTV LQDERFFPYT NGTLGIRDLQ ANDTGHYFCQ AANDQNNVTI BACU011419/1-1345 QWLDREGKTV LQDERFFPYT NGTLGIRDLQ ANDTGHYFCQ AANDQNNVTI 601 650 ENSTTRP00000007050/1-1252 VANLQVKDAT QITQGPRSAI EKKGSRVTFT CQASFDPSLQ HSITWRGDGR ENSP00000359077/1-1257 MANLKVKDAT QITQGPRSTI EKKGSRVTFT CQASFDPSLQ PSITWRGDGR ENSBTAP00000017906/1-1257 VANLQVKDAT RIMQGPRSAI EKRGSRVMFT CQASFDPSLQ HSTTWRRDAL bmy_18754T0/1-1154 VANLQVKDAT QITQGPRSAI EKKGSRVTFT CQASFDPSLQ HSITWRGDGR BACU011419/1-1345 VANLQVKDAT QITQGPRSAI EKKGSRVTFT CQASFDPSLQ HTITWRADGR 651 700 ENSTTRP00000007050/1-1252 DLQELGDSDK YFIEDGRLVI HSLDYSDQGN YSCVASTKLD AVESRAGLLV ENSP00000359077/1-1257 DLQELGDSDK YFIEDGRLVI HSLDYSDQGN YSCVASTELD VVESRAQLLV ENSBTAP00000017906/1-1257 DLQELGDSDK YFIEDERLVI HSLDYSDQGN YSCVASTKLD VVESRAELLV bmy_18754T0/1-1154 DLQELGDSDK YFIEDGRLVI HTLDYSDQGN YTCVASTKLD AVESRAELLV BACU011419/1-1345 DLQELGDSDK YFIEDGHLVI HSLDYSDQGN YTCVASTKLD AVESRAELLV 701 750 ENSTTRP00000007050/1-1252 VXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ---------- ENSP00000359077/1-1257 VGSPGPVPRL VLSDLHLLTQ SQVRVSWSPA EDHNAPIEK- ---------- ENSBTAP00000017906/1-1257 VGSPGPVPQL ELSDHHLLKQ SQVRLSWSPA DDHNAPIEK- ---------- bmy_18754T0/1-1154 VGSPGPAPRL ELSDRHLLKW SQVRLSWSPA DDHNAPIEK- ---------- BACU011419/1-1345 VGSPGPVPQL QLSDRHLLKQ SQVHLSWSPA DDHNAPIERR ARLCRPITTP 751 800 ENSTTRP00000007050/1-1252 ---------- ---XXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000359077/1-1257 ---------- ---YDIEFED KEMAPEKWYS LGKVPGNQTS TTLKLSPYVH ENSBTAP00000017906/1-1257 ---------- ---YDIEFED KEMAPEKWYS LGKVPGNQTS TTLKLSPYVH bmy_18754T0/1-1154 ---------- ---YDIEFED KEMAPEKWHS LGKVPGNQTS TTLKLSPYVH BACU011419/1-1345 PLATRRLLHF LAEYDIEFED KEMAPEKWHS LG-------- ---------- 801 850 ENSTTRP00000007050/1-1252 XXXXXXXXXX XXXXXXXXPS ETVLTPEAAP EKNPVDVKGE GNETNNMVIT ENSP00000359077/1-1257 YTFRVTAINK YGPGEPSPVS ETVVTPEAAP EKNPVDVKGE GNETTNMVIT ENSBTAP00000017906/1-1257 YTFRVTAINK YGPGEPSPDS ETVVTPEAAP EKNPVDVKGE GNETNNMVIT bmy_18754T0/1-1154 YTFRVTAINK YGPGEPSPAS ETVVTPEAAP EKNPVDVKGE GNETNNMVIT BACU011419/1-1345 ---------- ---------- ---------- ---------- ---------- 851 900 ENSTTRP00000007050/1-1252 WKPLRWMDWN APQVQYRVQW RPQKTQGAWQ EQIVSDPFLV VSNTSTFVPY ENSP00000359077/1-1257 WKPLRWMDWN APQVQYRVQW RPQGTRGPWQ EQIVSDPFLV VSNTSTFVPY ENSBTAP00000017906/1-1257 WKPLRWMDWN APQVQYRVQW RPQKMQGAWQ EQIVSDPFLV VSNTSTFVPY bmy_18754T0/1-1154 WKPLRWMEWN APQVQYRVQW RPQKTQGAWQ EQIVSSPFLV VSNTPTFVPY BACU011419/1-1345 -KPLRWMEWN APQVQYRVQW RPQKTQGAWQ EQIVSDPFLV VSNTPTFVPY 901 950 ENSTTRP00000007050/1-1252 EIKVQAVNSQ GKGPEPQITI GYSGEDYPQA SPELEGIKIL NSSTVLVRWW ENSP00000359077/1-1257 EIKVQAVNSQ GKGPEPQVTI GYSGEDYPQA IPELEGIEIL NSSAVLVKWR ENSBTAP00000017906/1-1257 EIKVQTVNSQ GKGPEPQITI GYSGEDYPQA SPLLEPVKAL NSSTVLVRWQ bmy_18754T0/1-1154 EIKVQAVNSQ GKGPEPQITV GYSGEDYPQA SPELEGIKIL NSSTVLVRWW BACU011419/1-1345 EIKVQAVNSQ GKGPEPQITV GYSGEDYPQA SPELEGIKIL NSSTVLVRWW 951 1000 ENSTTRP00000007050/1-1252 PVDPAQVKGH LRGYNXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000359077/1-1257 PVDLAQVKGH LRGYNVTYWR EGSQRKHSKR HIHKDHVVVP ANTTSVILSG ENSBTAP00000017906/1-1257 SVDPAQVKGH LRGYNVTYWW EGSQRKHNKR HVHKGHVVVP ANATSTILGG bmy_18754T0/1-1154 PVDPAQVKGH LRGYNVTYWW EGSQRKHSKR HVHKGHVVVP ANSTSSILGG BACU011419/1-1345 PVDPAQVKGH LRGYNVTYWW EGSQRKHSKR HVHKGHVVVP ANSTSTILGG 1001 1050 ENSTTRP00000007050/1-1252 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000359077/1-1257 LRPYSSYHLE VQAFNGRGSG PASEFTFSTP EGVPGHPEAL HLECQSNTSL ENSBTAP00000017906/1-1257 LRPYSSYWVE VQAFNGRGLG PASGMTFNTP EGVPGHPEAL HLECQSDTSL bmy_18754T0/1-1154 LRPYSSYHVE VRAFNGRGLG PASEMTFSTP EG-------- ---------- BACU011419/1-1345 LRPYSSYHLE VQAFNGRGLG PASEMTFSTP EGVPGHPEAL HLECQSDTSL 1051 1100 ENSTTRP00000007050/1-1252 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000359077/1-1257 LLRWQPPLSH NGVLTGYVLS YHPLDEGGKG QLSFNLRDPE LRTHNLTDLS ENSBTAP00000017906/1-1257 LLHWQPPLSH NGVLTGYVLS YQPLNDGSKE QLSFDLPDPE LRTHNLTNLS bmy_18754T0/1-1154 ---------- ---------- ---------- ---------- ---------- BACU011419/1-1345 LLHWQPPLSH NGVLTGYVLS YQPLDDGGKE QLSFDLPDPE LRTHNLTNLS 1101 1150 ENSTTRP00000007050/1-1252 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000359077/1-1257 PHLRYRFQLQ ATTKEGPGEA IVREGGTMAL SGISDFGNIS ATAGENYSVV ENSBTAP00000017906/1-1257 PRLRYRFQLQ ATTREGPGEA IVREGGTMAL SGMPDFGNIS AMAGENYSVV bmy_18754T0/1-1154 ---------- ---------- ---------- -GTPDFGNIS AMAGENYSVV BACU011419/1-1345 PHLRYRFQLQ ATTKEGPGEA IVREGGTMAL SGTPDFGNIS AMAGENYSVV 1151 1200 ENSTTRP00000007050/1-1252 XXXXXXXXXX XXXXXXXXXX XXEKLGAHLP PQYVSYNQSS YTQWDLQPDT ENSP00000359077/1-1257 SWVPKEGQCN FRFHILFKAL GEEKGGASLS PQYVSYNQSS YTQWDLQPDT ENSBTAP00000017906/1-1257 SWVPKEGQCN FGFQIWFKAL GDEKLVARLP PQYVSYNQSS YTQWDLQPDT bmy_18754T0/1-1154 SWVPKEGQCN FGFQIWFKAL GDEKLGAHLP PQYVSYNQSS YTQWDLQPDT BACU011419/1-1345 SWVPKEGQCN FGFQIWFKAL GDEKLGAHLP PQYVSYNQSS YTQWDLQPDT 1201 1250 ENSTTRP00000007050/1-1252 DYEIHLLKER VLLHQMAVKT NGTGRVRLP- ---------- ---------- ENSP00000359077/1-1257 DYEIHLFKER MFRHQMAVKT NGTGRVRLP- ---------- ---------- ENSBTAP00000017906/1-1257 DYEIQLLKEQ VLLHQMAVKT NGTGRVRLP- ---------- ---------- bmy_18754T0/1-1154 DYEIHLLKER ALLHQMAVRT NGTGRVRLP- ---------- ---------- BACU011419/1-1345 DYEIHLLKER VLLHQMAVKT NGTGRVRLPP AGFATEGWFI GFVSAIIVLL 1251 1300 ENSTTRP00000007050/1-1252 ---------- ---------- ----PAGFAT EGWFIGFVSA IIVLLLIFLI ENSP00000359077/1-1257 ---------- ---------- ----PAGFAT EGWFIGFVSA IILLLLVLLI ENSBTAP00000017906/1-1257 ---------- ---------- ----PAGFAT EGWFIGFISA IVVLLLVLLI bmy_18754T0/1-1154 ---------- ---------- ----PAGFAT EGWFIGFVSA IIVLLLIFLI BACU011419/1-1345 LIFLILCFIK RSKGGKYSGR VRLPPAGFAT EGWFIGFVSA IIVLLLIFLI 1301 1350 ENSTTRP00000007050/1-1252 LCFIKRSKGG KYSVKDKEDT QADSEARPMK DEAFGEYRSL ESDNEEKAFG ENSP00000359077/1-1257 LCFIKRSKGG KYSVKDKEDT QVDSEARPMK DETFGEYRSL ESDNEEKAFG ENSBTAP00000017906/1-1257 LCFIKRSKGG KYSVKDKEDT QVDSEARPMK DETFGEYRSL ESDNEEKAFG bmy_18754T0/1-1154 LCFIKRSKGG KYSVKDKEDT QVDSEARPMK DETFGEY--- -SDNEEKAFG BACU011419/1-1345 LCFIKRSKGG KYSVKDKEDT QVDSEARPMK DETFGEY--- -SDNEEKAFG 1351 1400 ENSTTRP00000007050/1-1252 SSQPSLNGDI KPLGSDDSLA DYGGSVDVQF NEDGSFIGQY S--KKRRSAG ENSP00000359077/1-1257 SSQPSLNGDI KPLGSDDSLA DYGGSVDVQF NEDGSFIGQY SGKKEKEAAG ENSBTAP00000017906/1-1257 SSQPSLNGDI KPLGSDDSLA DYGGSVDVQF NEDGSFIGQY SGKKEKEVAG bmy_18754T0/1-1154 SSQPSLNGDI KPLGSDDSLA DYGGSVDVQF NEDGSFIGQY SGKKEKEAAG BACU011419/1-1345 SSQPSLNGDI KPLGSDDSLA DYGGSVDVQF NEDGSFIGQY SGKKEKDAAG 1401 1450 ENSTTRP00000007050/1-1252 GNDSSGAVSL INSAGTLE ENSP00000359077/1-1257 GNDSSGATSP INPAVALE ENSBTAP00000017906/1-1257 GNDSSGATSP INPAGTLE bmy_18754T0/1-1154 GNDSSGAASP INPAGTLE BACU011419/1-1345 GNGSSGAASP TNPTGALE