KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:03:18 2014 Check: 00 .. Name: ENSTTRP00000000591/1-314 Len: 569 Check: 6902 Weight: 1.00 Name: BACU001024/1-435 Len: 569 Check: 9575 Weight: 1.00 Name: ENSP00000267859/1-435 Len: 569 Check: 2925 Weight: 1.00 Name: bmy_22011T0/1-434 Len: 569 Check: 1639 Weight: 1.00 Name: ENSBTAP00000017939/1-314 Len: 569 Check: 6123 Weight: 1.00 // 1 50 ENSTTRP00000000591/1-314 ---------- ---------- ---------- ---------- ---------- BACU001024/1-435 ---------- ---------- ---------- -MLSLPSEPL SASGSAAAAA ENSP00000267859/1-435 MLCGFQEDAT PPPPPRPRRL HRRLPRPEEV GMLSLPPGLL TVSGSAAAAD bmy_22011T0/1-434 ---------- ---------- ---------- -MLSLPPEPL SASGSAAAAA ENSBTAP00000017939/1-314 ---------- ---------- ---------- ---------- ---------- 51 100 ENSTTRP00000000591/1-314 ---------- ---------- ---------- ---------- ---------- BACU001024/1-435 AAAVAEGLGP GLTVG--GER APLGATFCDL AVSPTSPAWR GEEDEEAKGS ENSP00000267859/1-435 AVPLRPGDWA GVSTADRGER APLGPAFCDL AVSPTSPAWR GEEDEGAKAS bmy_22011T0/1-434 AVA--EGLGP GLTVG--GER APLGATFCDL AVSPTSPAWR GEEDEEAKGS ENSBTAP00000017939/1-314 ---------- ---------- ---------- ---------- ---------- 101 150 ENSTTRP00000000591/1-314 ---------- ---------- ---------- -------MEG VELKEEWQDE BACU001024/1-435 SG-------- --------DL GSLDYQELVV DIESRLRMEG VELKEEWQDE ENSP00000267859/1-435 SG-------- --------DI GSLDYQEFVV DIESRLRMEG VELKEEWQDE bmy_22011T0/1-434 SGRVRVAVRE QSMKWSLKDL GSLDYQELVV DIESRLRMEG VELKEEWQDE ENSBTAP00000017939/1-314 ---------- ---------- ---------- -------MEG VELKEEWQDE 151 200 ENSTTRP00000000591/1-314 DFPIPLPEDD SIEADILAVT GPESQPGSLE VNGNKVRKKL MAPDISLTLD BACU001024/1-435 DFPIPLPEDD SIEADILAVT GPESQPASLE VNGNKVRKKL MAPDVSLTLD ENSP00000267859/1-435 DFPIPLPEDD SIEADILAIT GPEDQPGSLE VNGNKVRKKL MAPDISLTLD bmy_22011T0/1-434 DFPIPLPEDD SIEADILAVT GPESQPGSLE VNGNKVRKKL MAPDISLTLD ENSBTAP00000017939/1-314 DFPIPLPEDD SIEADILAVT GPESQPGSLE VNGNKVRKKL MAPDISLTLD 201 250 ENSTTRP00000000591/1-314 PSDGSVWSDD LDESGEIDLD DLDTPSEDSN EFEWEDDLPK PKTTEVIRKG BACU001024/1-435 PSDGSVLSDD LDESGEIDLD DLDTPSEDSN EFEWEDDLPK PKTTEVIRKG ENSP00000267859/1-435 PSDGSVLSDD LDESGEIDLD GLDTPSENSN EFEWEDDLPK PKTTEVIRKG bmy_22011T0/1-434 PSDGSVLSDD LDESGEIDLD DLDTPSEDSN EFEWEDDLPK PKTTEVIRKG ENSBTAP00000017939/1-314 PSDGSVLSDD LDESGEIDLD DLDTPSEDSN EFEWEDDLPK PKTTEVIRKG 251 300 ENSTTRP00000000591/1-314 SITEYTAAEE KEDGRRWRMF RIGEQDHRVD MKAIEPYKKV ISHGXXXXXX BACU001024/1-435 SITEYTAAEE KEDGRRWRMF RIGEQDHRVD MKAIEPYKKV ISHGGYYGDG ENSP00000267859/1-435 SITEYTAAEE KEDGRRWRMF RIGEQDHRVD MKAIEPYKKV ISHGGYYGDG bmy_22011T0/1-434 SITEYTAAEE KEDGRRWRMF RIGEQDHRVD MKAIEPYKKV ISHGGYYGDG ENSBTAP00000017939/1-314 SITEYTAAEE KEDGRRWRMF RIGEQDHRVD MKAIEPYKKV ISHGGYYGDG 301 350 ENSTTRP00000000591/1-314 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXY VIGTLELLVA ENYMIVYLNG BACU001024/1-435 LNAIVVFAVC FMPESGQPNY RYLMDNLF-- ---------- ---------- ENSP00000267859/1-435 LNAIVVFAVC FMPESSQPNY RYLMDNLFKY VIGTLELLVA ENYMIVYLNG bmy_22011T0/1-434 LNAIVVFAVC FMPESGQPNY RYLMDNLFKY VIGTLELLVA ENYMIVYLNG ENSBTAP00000017939/1-314 LNAIVVFAVC FMPESGQPNY RYLMDNLFKY VIGTLELLVA ENYMIVYLNG 351 400 ENSTTRP00000000591/1-314 ATTRRKMPSL GWLRKCYQQI DRRLRKNLKS LIIVHPSWFI RTLLAVTRPF BACU001024/1-435 ---------- ---------- ---------- ---------- ---------- ENSP00000267859/1-435 ATTRRKMPSL GWLRKCYQQI DRRLRKNLKS LIIVHPSWFI RTLLAVTRPF bmy_22011T0/1-434 ATTRRKMPSL GWLRKCYQQI DRRLRKNLKS LIIVHPSWFI RTLLAVTRPF ENSBTAP00000017939/1-314 ATTRRKMPSL GWLRKCYQQI DRRLRKNLKS LIIVHPSWFI RTLLAVTRPF 401 450 ENSTTRP00000000591/1-314 ISSKFSQKIR YVFNLAELAE LVPMEYVGIP ECIKQ----- -------VDQ BACU001024/1-435 -NSKFSQKIR YVFNLAELAE LVPMEYVGIP ECIKQ----- -------VDQ ENSP00000267859/1-435 ISSKFSQKIR YVFNLAELAE LVPMEYVGIP ECIKQ----- -------VDQ bmy_22011T0/1-434 ISSKFSQKIR YVFNLAELAE LVPMEYVGIP ECIKQYEEEK LKKKQKRVDQ ENSBTAP00000017939/1-314 ISSKFSQKIR YVFNLAELAE LVPMEYVGIP ECIKQ----- -------VDQ 451 500 ENSTTRP00000000591/1-314 ELNGKQDEPK SEQ------- ---------- ---------- ---------- BACU001024/1-435 ELNGKQDEPK SEQFCECFRV VDPTPLSLRR LERYSGESQQ ITPQLALQVL ENSP00000267859/1-435 ELNGKQDEPK NEQ------- ---------- ---------- ---------- bmy_22011T0/1-434 ELNGKQDEPK SEHREPHFI- ---------- ---------- ---------- ENSBTAP00000017939/1-314 ELNGKQDEPK NEQ------- ---------- ---------- ---------- 501 550 ENSTTRP00000000591/1-314 ---------- ---------- ---------- ---------- ---------- BACU001024/1-435 LQFDKAINSA LAQRVRNRVN FRGSLNTYRF CDNVWTFVLN DVEFREVTEL ENSP00000267859/1-435 ---------- ---------- ---------- ---------- ---------- bmy_22011T0/1-434 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000017939/1-314 ---------- ---------- ---------- ---------- ---------- 551 600 ENSTTRP00000000591/1-314 ---------- --------- BACU001024/1-435 IKVDKVKIVA CDGKSKCLP ENSP00000267859/1-435 ---------- --------- bmy_22011T0/1-434 ---------- --------- ENSBTAP00000017939/1-314 ---------- ---------