KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:03:18 2014 Check: 00 .. Name: ENSP00000436068/1-489 Len: 580 Check: 964 Weight: 1.00 Name: ENSBTAP00000017940/1-497 Len: 580 Check: 8900 Weight: 1.00 Name: ENSTTRP00000009453/1-486 Len: 580 Check: 277 Weight: 1.00 Name: bmy_13362T0/1-522 Len: 580 Check: 8787 Weight: 1.00 Name: BACU012712/1-465 Len: 580 Check: 1067 Weight: 1.00 // 1 50 ENSP00000436068/1-489 MEP-GLEHAL ------RRTP SWSSLGGSEH QEMSFLEQEN SSSWPSPAVT ENSBTAP00000017940/1-497 MEPAELEHAL CGSLFSTQTP SWSSFGGPEH QEMSFLEQGD STSWPSPAMT ENSTTRP00000009453/1-486 ----EPEHAL ------RRTP SWSSLLGPEH QEMSFLEQGD STSWPSPAMT bmy_13362T0/1-522 ---------- ---------- ---------- --MSFLEQGD STSWPSPAMT BACU012712/1-465 ---------- ---------- ---------- --MSFLEQGD STSWPSPAMT 51 100 ENSP00000436068/1-489 SSSERIRGKR RAKALRWTRQ KSVEEGEPPG QGEGPRSRPA AESTGLEATF ENSBTAP00000017940/1-497 TSAEISLGEQ RTKVSRWKSQ EDVEERELPG LEGGPQSRAA AESTGLEATF ENSTTRP00000009453/1-486 TSSERSHGEQ GTKASRWTRQ EDVEEGEPPG LGEGLQSRPA AESTGLEATF bmy_13362T0/1-522 TSSERSHGEQ GTKASRWTRQ EDVEEGEPPG LGE------- ---------- BACU012712/1-465 TSSERSHGEQ GTKASRWTRQ EDVEEGEPPD LGEGLQSRPA AESTGLEATF 101 150 ENSP00000436068/1-489 PKTTPLAQAD P-AGVGTPPT GWDCLPSDCT ASAAGSSTDD VELATEFPAT ENSBTAP00000017940/1-497 PKATPLAQAT PLSAVGTPTT ERDSLPADCT ASASSSSTDD LDQGIEFSAP ENSTTRP00000009453/1-486 PKATPWTQAA PLAGVGSPTA EWDILPPDCA ASASSSSTDD LDVGIEFSAT bmy_13362T0/1-522 --------AA PLAGVDSPTA ERDILPPDCA ASASGSSTDD LDLGIEFSAT BACU012712/1-465 PKATPWTQAA PLAGVDSPTA ERDILPADCA ASASGSSADD LDLGIEFSAT 151 200 ENSP00000436068/1-489 EAWECELEGL LEERPALCLS PQAPFPKLGW DDELRKPGAQ IYMRFMQEHT ENSBTAP00000017940/1-497 AAWGDEL-GL VEERPAQCPS PQVPVLRLGW DDELRKPGAQ VYMHFMQEHT ENSTTRP00000009453/1-486 AAWGDEL-GL VEERPAPCPS PQALLPRLSW DDELQKPGAQ VYMHFMQEHT bmy_13362T0/1-522 AAWGNEL-GL VEERPAPCPS PQALLPRLGW DDELRKPGAQ VYMHFMQEHT BACU012712/1-465 AAWGNEL-GL VEERPAPCPS PQALLPRLGW DDELRKPGAQ VYMHFMQEHT 201 250 ENSP00000436068/1-489 CYDAMATSSK LVIFDTMLEI KKAFFALVAN GVRAAPLWDS KKQSFVGMLT ENSBTAP00000017940/1-497 CYDAMATSSK LVIFDTMLQI KKAFFALVAN GVRAAPLWDS KKQSFVGMLT ENSTTRP00000009453/1-486 CYDAMATSSK IVIFDTMLQI KKAFFALVAN GVRAAPLWDS KKQSFVGMLT bmy_13362T0/1-522 CYDAMATSSK LVIFDTMLQI KKAFFALVAN GVRAAPLWDS KKQSFVGMLT BACU012712/1-465 CYDAMATSSK LVIFDTMLQI KKAFFALVAN GVRAAPLWDS KKQRFVGMLT 251 300 ENSP00000436068/1-489 ITDFILVLHR YYRSPLVQIY EIEQHKIETW REIYLQGCFK PLVSISPNDS ENSBTAP00000017940/1-497 ITDFILVLHR YYRSPLVQIY EIEEHKIETW REIYLQGCFK PLVSISPSDS ENSTTRP00000009453/1-486 ITDFILVLHR YYRSPLVQIY EIEEHTIETW REIYLQGSFK PLVSISPSDS bmy_13362T0/1-522 ITDFILVLHR YYRSPLVQIY EIEDHKIETW REIYLQGCFK PLVSISPSDS BACU012712/1-465 ITDFILVLHR YYRSPLVQIY EIEDHKIETW REIYLQGCFK PLVSISPSDS 301 350 ENSP00000436068/1-489 LFEAVYTLIK NRIHRLPVLD PVSGNVLHIL THKRLLKFLH IF-------- ENSBTAP00000017940/1-497 LFEAVYTLIK NRIHRLPVLD PVSGAVLHIL THKRLLKFLH IF-------- ENSTTRP00000009453/1-486 LFEAVYTLIK NRIHRLPVLD PVSGAVLHIL THKRLLKFLH IF-------- bmy_13362T0/1-522 LFEAVYTLIK NRIHRLPVLD PVSGAVLHIL THKRLLKFLH IFVSLGTASA BACU012712/1-465 LFEAVYTLIK NRIHRLPVLD PVSGAVLHIL THKRLLKFLH IF-------- 351 400 ENSP00000436068/1-489 ---------- ---------- ---------- -------GSL LPRPSFLYRT ENSBTAP00000017940/1-497 ---------- ---------- ---------- ------QRTL LPRPSFLYRT ENSTTRP00000009453/1-486 ---------- ---------- ---------- -------GTL LPRPSFLSCT bmy_13362T0/1-522 GDPRGREVFS PRDWGGSSWE PSGGYSTLIP TCPQPKQGTL LPGPSFLSRT BACU012712/1-465 ---------- ---------- ---------- ------QGTL LPGPSFLSRT 401 450 ENSP00000436068/1-489 IQDLGIGTFR DLAVVLETAP ILTALDIFVD RRVSALPVVN ECGQVVGLYS ENSBTAP00000017940/1-497 IQDLGIGTFR DLAVVLETAP ILTALDIFVD RRVSALPVIN EAGQVVGLYS ENSTTRP00000009453/1-486 IQDVGIGTFR DLAMVLETAP ILTALDIFVD RRVSALPVVN EAGQVVGLYS bmy_13362T0/1-522 IQDVGIGTFR DLAMVLETAP ILTALDIFVD RRVSALPVVN EAGQVVGLYS BACU012712/1-465 IQDVGIGTFR DLAMVLETAP ILTALDIFVD RRVSALPVVN EAGQVVGLYS 451 500 ENSP00000436068/1-489 RFDVIHLAAQ QTYNHLDMSV GEALRQRTLC LEGVLSCQPH ESLGEVIDRI ENSBTAP00000017940/1-497 RFDVIHLAAQ QTYNHLDISV GEALRRRTLC LEGVLSCQPH ETLGEVIDRI ENSTTRP00000009453/1-486 RFDVIHLAAQ QTYNHLDVSV GEALRQRTLC LEKVVSCQPH ETLGEVIDRI bmy_13362T0/1-522 RFDVIHLAAQ QTYNHLDVSV GEALRQRTLC LEEVISCQPH ETLGEVIDRI BACU012712/1-465 RFDVIHLAAQ QTYNHLDVSV GEALKQRTLC LEEVISCQPH ETLGEVIDRI 501 550 ENSP00000436068/1-489 AREQVHRLVL VDETQHLLGV VSLSDILQAL V--------- ---------- ENSBTAP00000017940/1-497 AREQVHRLVL VDETQHLLGV VSLSDILQAL V--------- ---------- ENSTTRP00000009453/1-486 VQEQVHRLVL VDETQHLLGV VSLSDILQAL V--------- ---------- bmy_13362T0/1-522 VREQVHRLVL VDETQHLLGV VSLSDILQAL ASPALPDCPC PACAPRSPQE BACU012712/1-465 VREQVHRLVL VDETQHLLGV VSLSDILQAL V--------- ---------- 551 600 ENSP00000436068/1-489 ---------- ------LSPA GIDALGA--- ENSBTAP00000017940/1-497 ---------- ------LSPA GIDALGA--- ENSTTRP00000009453/1-486 ---------- ------LSPA GIDALGA--- bmy_13362T0/1-522 CLVHRGMMKL RTAESSLELS EPEALGLPQG BACU012712/1-465 ---------- ------LSPA GIDALGA---