KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:03:20 2014 Check: 00 .. Name: ENSTTRP00000005910/1-1212 Len: 1309 Check: 7827 Weight: 1.00 Name: ENSBTAP00000017965/1-1227 Len: 1309 Check: 5986 Weight: 1.00 Name: ENSP00000364220/1-1220 Len: 1309 Check: 9016 Weight: 1.00 Name: bmy_20145T0/1-1162 Len: 1309 Check: 4127 Weight: 1.00 Name: BACU005728/1-1268 Len: 1309 Check: 7474 Weight: 1.00 // 1 50 ENSTTRP00000005910/1-1212 MPGLLNQITG AALPLTASDV TSFVSGYALG LTASLTYGNL EAQPFQGLFV ENSBTAP00000017965/1-1227 MPGLLNQITG AALPLTASDV TSFVSGYALG LTASLTYGNL EAQPFQGLFV ENSP00000364220/1-1220 MPGLLNWITG AALPLTASDV TSCVSGYALG LTASLTYGNL EAQPFQGLFV bmy_20145T0/1-1162 MPGLLNQITG AALPLTASDV TSFVSGYALG L--------- --------FV BACU005728/1-1268 MPGLVNQITG AALPLTASDV TSFVSGYALG LTASLTYGNL EAQPFQGLFV 51 100 ENSTTRP00000005910/1-1212 YPLDEYTTVI GFEAVIADRV VTVQIKDKAK MEGGRLDATG LRAATVTGNI ENSBTAP00000017965/1-1227 YPLDEHTTVI GFEAVIGDRV VTVQIKDKAK IEGGHFEATG IRAATVT--- ENSP00000364220/1-1220 YPLDECTTVI GFEAVIADRV VTVQIKDKAK LESGHFDASH VRSPTVTGNI bmy_20145T0/1-1162 YPLDEYTTVI GFEAVIADRV VTVQIKDKAK MEGGHLDATG LRAATVT--- BACU005728/1-1268 YPLDEYTTVI GFEAVIADRV VTVQIKDKAK MEGGHLDATG LRAATVT--- 101 150 ENSTTRP00000005910/1-1212 LIP------- SCTPGKVALD EDLERILFVV NLGTIAPMEN VTIFVSTSSE ENSBTAP00000017965/1-1227 --DRTKHQKS ILSPGKVALD EDLERILFVV NLGTIAPMEN VFVFISTSSE ENSP00000364220/1-1220 LQDGVSIAPH SCTPGKVTLD EDLERILFVA NLGTIAPMEN VTIFISTSSE bmy_20145T0/1-1162 ---------- ----GKVALD EDLERILFVV NLGTVAPMEN VTIFVSTSSE BACU005728/1-1268 ---------- ----GKVALD EDLERILFVV NLGTIAPMEN VTIFVSTSSE 151 200 ENSTTRP00000005910/1-1212 LLTLPSGAVR VLLPAVCAPT VPQFCTESTG PSNQQTHGKD KHCFGPRALD ENSBTAP00000017965/1-1227 LPTLPSGAVR VQLPAVCAPT VPQFCTESTG APSQQVHGRD KHCFG--SLD ENSP00000364220/1-1220 LPTLPSGAVR VLLPAVCAPT VPQFCTKSTG TSNQQAQGKD RHCFGAWAPG bmy_20145T0/1-1162 LPTLPSGAVR VLLPAVCAPT VPQFCTENTG PSNQQTHGKD KHCFGPQALD BACU005728/1-1268 LPTLPSGAVR VLLPAVCAPT VPQFCTESTG PSNQQTHGKD KHCFDPQALD 201 250 ENSTTRP00000005910/1-1212 SWNKLSLATL LDTDVSNPME YEFNFQLEIR GPCLLAGVES PTHEIRADAS ENSBTAP00000017965/1-1227 SWNRLCLSTL LDTDVSNPME YEFNFQLEIR GPCLLAGVES PTHEIRADAA ENSP00000364220/1-1220 SWNKLCLATL LNTEVSNPME YEFNFQLEIR GPCLLAGVES PTHEIRADAA bmy_20145T0/1-1162 SWNKLCLATL LDTDVSNPME YEFNFQLEIR GPCLLAGVES PTHEIRADAA BACU005728/1-1268 SWNKLCLATL LDTDVSNPME YEFNFQLEIR GPCLLAGVES PTHEIRADAA 251 300 ENSTTRP00000005910/1-1212 PSARSAESII ITLANRHTFD RPVEILIHPS ---------- ---------- ENSBTAP00000017965/1-1227 PSASSAESII VTLANRHTFD RPVEILIHPS ---------- ---------- ENSP00000364220/1-1220 PSARSAKSII ITLANKHTFD RPVEILIHPS ---------- ---------- bmy_20145T0/1-1162 PSARSAKSII ITLANRHTFD RPVEILIHPS ---------- ---------- BACU005728/1-1268 PSARSAKSII ITLANRHTFD RPVEILIHPS GTVHQAGPPE CLWEGGGADP 301 350 ENSTTRP00000005910/1-1212 ---------- ---------- ---------- ---------- EPYMPHVLME ENSBTAP00000017965/1-1227 ---------- ---------- ---------- ---------- EPHLPHVLME ENSP00000364220/1-1220 ---------- ---------- ---------- ---------- EPHMPHVLIE bmy_20145T0/1-1162 ---------- ---------- ---------- ---------- EPYMPHVLME BACU005728/1-1268 MGHRHVAPHP VASERICHST EAPSITLTLG QVPRVDLISA EPYMPHVLME 351 400 ENSTTRP00000005910/1-1212 KGDMTLGEFD QHLKGRTDFI KGMKKDSSAE RKXXXXXXXX XXXXXXXXXX ENSBTAP00000017965/1-1227 KGDMTLGEFD QHLKGRADFI KGMKKDSSAE RKTEIIRKRL HKDIPHHSVI ENSP00000364220/1-1220 KGDMTLGEFD QHLKGRTDFI KGMKKKSRAE RKTEIIRKRL HKDIPHHSVI bmy_20145T0/1-1162 KGDMTLGEFD QHLKGRTDFI KGMKKDSSAE RKTEIIRKRL HKDIPHHSVI BACU005728/1-1268 KGDMTLGEFD QHLKGRTDFI KGMKKDSSAE RKTEIIRKRL HKDIPHHSVI 401 450 ENSTTRP00000005910/1-1212 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XDAMLVALKS ENSBTAP00000017965/1-1227 MLNFCPDLQS VQPNLRKTRG EFIFLVDRSG SMNGTNIQCV KDAMLVALKS ENSP00000364220/1-1220 MLNFCPDLQS VQPCLRKAHG EFIFLIDRSS SMSGISMHRV KDAMLVALKS bmy_20145T0/1-1162 MLNFCPDLQS VQPNLRKTHG EFIFLIDRSD SMNGTNIHRV KDAMLVALKS BACU005728/1-1268 MLNFCPDLQS VQPNLRKTHG EFIFLIDRSD SMNGTNIHRV KDAMLVALKS 451 500 ENSTTRP00000005910/1-1212 LMPACLFNVI GFGSTFKTLF PSSQTYNEES LAKACDNIQR MQADMGGTNI ENSBTAP00000017965/1-1227 LVPTCLFNVI GFGSTFKTLF PSSQTYNEEN LAMACDSIQK MRADMGGTNI ENSP00000364220/1-1220 LMPACLFNII GFGSTFKSLF PSSQTYSEDS LAMACDDIQR MKADMGGTNI bmy_20145T0/1-1162 LMPACLFNVI GFGSTFKTLF PSSQTYNEES LAKACDNIQR MQADMGGTNI BACU005728/1-1268 LMPACLFNVI GFGSTFKTLF PSSQTYNEES LAKACDNIQR MQADMGGTDI 501 550 ENSTTRP00000005910/1-1212 LSPLKWVIRQ PVPRGHPRLL FVITDGAVSN TGKVLELLRN HAFSTRCYSF ENSBTAP00000017965/1-1227 LSPLKWVIRQ PVLRGCPRLL FLITDGAVNN TGKVLELVRN HAFSTRCYSF ENSP00000364220/1-1220 LSPLKWVIRQ PVHRGHPRLL FVITDGAVNN TGKVLELVRN HAFSTRCYSF bmy_20145T0/1-1162 LSPLKWIIRQ PVLRGHPRLL FLITDGAVNN TGKVLELVRN HAFSTRCYSF BACU005728/1-1268 LSPLKWIIRQ PALRGHPRLL FLITDGAAHN TGKVLELVRN HAFSTRCYSF 551 600 ENSTTRP00000005910/1-1212 GIGPNVCHRL VKGLATVSKG SAEFLVEGER LQPKMVKSLK KAMAPVLSDV ENSBTAP00000017965/1-1227 GIGPNVCHRL VKGLATVSKG SAEFLEEGER LQPKMVKSLK KAMAPVLSDV ENSP00000364220/1-1220 GIGPNVCHRL VKGLASVSEG SAELLMEGER LQPKMVKSLK KAMAPVLSDV bmy_20145T0/1-1162 GIGPNVCHRL VKGLATVSKG SAEFLVEGER LQPKMVKSLK KAMAPVLSDV BACU005728/1-1268 GIGPNVCHRL VKGLATVSKG SAEFLVEGER LQPKMVKSLK KAMAPVLSDV 601 650 ENSTTRP00000005910/1-1212 TVEWVFPETT EVLISPVSTS SLFPGERLVG YGIVCDASLY ISNPRTDKRR ENSBTAP00000017965/1-1227 TVEWVFPETT EVLISPVSTS SLFPGERLVG YGIVCDASLY ISNPRTDKRR ENSP00000364220/1-1220 TVEWIFPETT EVLVSPVSAS SLFPGERLVG YGIVCDASLH ISNPRSDKRR bmy_20145T0/1-1162 TVEWVFPETT EALISPVSTS SLFPGERLVG YGIVCDASLY ISNPRTDKRR BACU005728/1-1268 TVEWVFPETT EALISPVSTS SLFPGERLVG YGIVCDASLY ISNPRTDKRR 651 700 ENSTTRP00000005910/1-1212 RYSMLHSQES GSSVFYHSQD EGPSPDTGDC AKSLGTPFNL RQAKDAQPSS ENSBTAP00000017965/1-1227 RYSMLHSQES GSSVFYHSQD EEPNPDSGDC VRSVGAPFNP RQAKDAQPSS ENSP00000364220/1-1220 RYSMLHSQES GSSVFYHSQD DGPGLEGGDC AKNSGAPFIL GQAKNARLAS bmy_20145T0/1-1162 RYSMLHSQES GSSVFYHSQD EGPSPDSGDC AKSLGTPFTL RQAKDAQPSS BACU005728/1-1268 RYSMLHSQES SSSVFYHSQD EGPSPDSGDC AKSLGTPFTL RQAKGAQPSS 701 750 ENSTTRP00000005910/1-1212 GDSATSPGLD FSQRRRAYST NQITTHKPSP RALTASDPTT AARRYPLRKA ENSBTAP00000017965/1-1227 GDATPNPGLD LSQRRRAYST NQITNHKPTP RTLIASDPTT ATRRYPLRKT ENSP00000364220/1-1220 GDSTTKHDLN LSQRRRAYST NQITNHKPLP RATMASDPMP AAKRYPLRKA bmy_20145T0/1-1162 RDSATYPGLD FSQRRRAYST NQITNHKPSP RGLTASDPTT AARRYPLRKT BACU005728/1-1268 GDSATNPGLD FSQRRRAYST NQITNHKPSP RALTASDPTT AARRYPLRKT 751 800 ENSTTRP00000005910/1-1212 KLQDLTKQTS LDAPRWQIDL Q---PLLNSG PDLSQGPR-L WGPVARRPSL ENSBTAP00000017965/1-1227 KLQDLTNQTS LDAPWWQIDL QLTISLKTKG QFLSVTPKCL CSP---TPSS ENSP00000364220/1-1220 RLQDLTNQTS LDVQRWQIDL Q---PLLNSG QDLNQGPK-L RGPGARRPSL bmy_20145T0/1-1162 KLQDLTKQTS LDAPRWQIDL Q---PLLNSG PDPSQGPR-L WGPGARRPSL BACU005728/1-1268 KLQDLTKQTS LDAPRWQIDL Q---PLLNSG LDPSQGPR-L WGPGARRPSL 801 850 ENSTTRP00000005910/1-1212 LPQGCR---- PFLPSGQETQ AWSAMNEL-- ------ASDS CSPGDLELSH ENSBTAP00000017965/1-1227 FQAGVHVPRA NLIFFNYKSN TITPARAASC SKARRMARAA RRRKD--TLH ENSP00000364220/1-1220 LPQGCQ---- PFLPWGQETQ AWSPVRER-- ------TSDS RSPGDLEPSH bmy_20145T0/1-1162 LPQGCQ---- PFLPSGQETQ AWSPMKELDP GSGLKPASDS CSPGELELSH BACU005728/1-1268 LPQGWQ---- PFLPSSQETQ AWSPMKELDL GSGLKPASDS CSPGELELSH 851 900 ENSTTRP00000005910/1-1212 HPSAFETETS SDWETLAESE EQAS---PRR PAS---PGPV LGKR-VKGLR ENSBTAP00000017965/1-1227 RTGSCAPPLT GPGGPSTKHT SHCKCWLSRR PLTTALPSTG PGVAGLLGLA ENSP00000364220/1-1220 HPSAFETETS SDWDPPAESQ ERAS---PSR PAT---PAPV LGKALVKGLH bmy_20145T0/1-1162 HPSAFETETS SDWEPLGESE EQAS---PRR PAT---PGPV LGKAVVKGLR BACU005728/1-1268 HPSAFETETS SDWEPLAESE EQAS---PRR PTT---PGPV LGKAVVKGLR 901 950 ENSTTRP00000005910/1-1212 DSQPLQWXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX X------XXX ENSBTAP00000017965/1-1227 RSSDSGWAIS DTAPPPPGWA PGLYEADLWS PCSQETCRKI LSTTCGGRTF ENSP00000364220/1-1220 DSQRLQWEVS FELGTPGPER GGAQDADLWS ETFHHLAARA II-----RDF bmy_20145T0/1-1162 DSQPLQWEVS FELGPPGPRR GGAREPDLWS ETFHHLAARA II-----RDF BACU005728/1-1268 DSQPLQWEVS FELGPPGPKR GGAREPDLWS ETFHHLAARA II-----RDF 951 1000 ENSTTRP00000005910/1-1212 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000017965/1-1227 RVRTVPSAPP SAGSSRRYQV NAVHTSKACN VISKYTAFVP VDINKSRYLP ENSP00000364220/1-1220 EQLAEREGEI EQGSNRRYQV SALHTSKACN IISKYTAFVP VDVSKSRYLP bmy_20145T0/1-1162 EQLAEREGEI EQGSSRRYQV NAVHTSKACN VISKYTAFVP VDRSKSRYLP BACU005728/1-1268 EQLAEREGEI EQGSSRRYQV NAVHTSKACN VISKYTAFVP VDRSKSRYLP 1001 1050 ENSTTRP00000005910/1-1212 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000017965/1-1227 TVVGYPNSG- --KMVSSRVL TRQWKGTS-G FGRSQTMLGE DSAAGDSKYQ ENSP00000364220/1-1220 TVVEYPNSAA -LRMLGSRAL AQQWRGTSSG FGRPQTMLGE DSAPGNGKFQ bmy_20145T0/1-1162 TVVGYPNSGA VLRMVSSRVL TRQSRGTSAG FRRTQTMLGE DSAAGDGKFH BACU005728/1-1268 TVVGYPNSGA VLRMVSSRVL TRQSRGTSAG FRRSQTMLGE DSAAGDGKFQ 1051 1100 ENSTTRP00000005910/1-1212 XXXVEESPTA SFSENTSPGR EKYATPE-XX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000017965/1-1227 NLNVEESTLT PFSESMA--R EKYATLEAGP LRGLATNTVS SLKASDTLFG ENSP00000364220/1-1220 ALNMEASPTA LFSEARSPGR EKHGASE-GP QRSLATNTLS SMKASENLFG bmy_20145T0/1-1162 NLNVEESPTA PFSENTSPGR EK-------- ---------- ---------- BACU005728/1-1268 NLNVEESPTA PFSENTSPGR EQYATPE-GP LRSLATNTLS SLKASETLFG 1101 1150 ENSTTRP00000005910/1-1212 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000017965/1-1227 SRLSLNKSRL LTRAAKGFLG KPLTKTPDSA QGNQSSDYIP LVSLQLASGA ENSP00000364220/1-1220 SWLNLNKSRL LTRAAKGFLS KPLIKAVEST SGNQSFDYIP LVSLQLASGA bmy_20145T0/1-1162 --LNLNKSRL LTRAAKGFLG KPLTKAPESA PGSQSLDYVP LVSLQLASGA BACU005728/1-1268 SRLNLNKSRL LARAAKGFLG KPLTKAPESA PGSQSLDYVP LVSLQLASGA 1151 1200 ENSTTRP00000005910/1-1212 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000017965/1-1227 FLLNQAFCEA IHVPMEKLKW TSPFTCHRVS LTTR----QP PSPQPCTSPA ENSP00000364220/1-1220 FLLNEAFCEA THIPMEKLKW TSPFTCHRVS LTTRPSESKT PSPQLCTSSP bmy_20145T0/1-1162 FLLNQAFCEA IHIPMEKLKW TSPFTCHRAS LTAR----QP PSPQMCTSPS BACU005728/1-1268 FLLNQAFCEA IHIPMEKLKW TSPFTCHRVS LTAR----QH PGPQMCTSPS 1201 1250 ENSTTRP00000005910/1-1212 XXXXXXXXXX XXXXXXXTPG WEPRAAVEHT GQLWATVVAL AWLEHSSASY ENSBTAP00000017965/1-1227 PLHPSRDGLS QEPLAEGRPG QEPRAVVEHM GKMWATVVAL AWLEHSSASY ENSP00000364220/1-1220 PRHPSCDSFS LEPLAKGKLG LEPRAVVEHT GKLWATVVGL AWLEHSSASY bmy_20145T0/1-1162 PRHPSCDSFS PEPLAEGKPG WEPRAVVEHT GKLWATVVAL AWLEHSSASY BACU005728/1-1268 PRHPSCDSFS PEPRAEGKPG WEPRAAVERT GKLWATVVAL AWLEHSSASY 1251 1300 ENSTTRP00000005910/1-1212 FVEWELVAAK ASSWLEQQEV PEGRTRGALK AAARQLFVLL RHWDESLGFN ENSBTAP00000017965/1-1227 FVEWELVAAK ASSWLEQQEV PEGRTQGTLK AAARQLFVLL RHWDENLEFN ENSP00000364220/1-1220 FTEWELVAAK ANSWLEQQEV PEGRTQGTLK AAARQLFVLL RHWDENLEFN bmy_20145T0/1-1162 FVEWELVAAK ASSWLEQQEV PEGRTRGALK AAARQLFVLL RHWDENLEFN BACU005728/1-1268 FVEWELVAAK ASSWLEQQEV PEGRTRGALK AAARQLFVLL RHWDENLEFN 1301 1350 ENSTTRP00000005910/1-1212 MLCYNPNYV ENSBTAP00000017965/1-1227 MLCYNPNYV ENSP00000364220/1-1220 MLCYNPNYV bmy_20145T0/1-1162 MLCYNPNYV BACU005728/1-1268 MLCYNPNYV