KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:03:21 2014 Check: 00 .. Name: BACU004816/1-521 Len: 521 Check: 1072 Weight: 1.00 Name: bmy_00482T0/1-358 Len: 521 Check: 9121 Weight: 1.00 Name: ENSP00000379203/1-382 Len: 521 Check: 5869 Weight: 1.00 Name: ENSTTRP00000012519/1-380 Len: 521 Check: 9211 Weight: 1.00 Name: ENSBTAP00000017968/1-382 Len: 521 Check: 6771 Weight: 1.00 // 1 50 BACU004816/1-521 MTEFWLISAP GEKTCQQTWE KLHAATTKNN NLAVTSKFNI PDLKVGTLDV bmy_00482T0/1-358 MTEFWLISAX GEKTCQQTWE KLHAATTKNN NLAVTSKFNI PDLKVGTLDI ENSP00000379203/1-382 MTEFWLISAP GEKTCQQTWE KLHAATSKNN NLAVTSKFNI PDLKVGTLDV ENSTTRP00000012519/1-380 MTEFWLISAP GEKTCQQTWE KLHAATTKNN NLAATSKFNI PDLKVGTLDV ENSBTAP00000017968/1-382 MTEFWLISAP GEKTCQQTWE KLHAATTKNN NLAVSSKFNI PDLKVGTLDV 51 100 BACU004816/1-521 LVGLSDELAK LDAFVEGVVK KVAQYMADVL EDSKDKVQEN LLANGVDLVT bmy_00482T0/1-358 LVGLSDELAK LDAFVEGVVK KVAQYMADVL EDSKDKVQEN LLANGVDLVT ENSP00000379203/1-382 LVGLSDELAK LDAFVEGVVK KVAQYMADVL EDSKDKVQEN LLANGVDLVT ENSTTRP00000012519/1-380 LVGLSDELAK LDAFVEGVVK KVAQYMADVL EDSKDKVQEN LLANGVDLVT ENSBTAP00000017968/1-382 LVGLSDELAK LDAFVEGVVK KVAQYMADVL EDSKDKVQEN LLANGVDLVT 101 150 BACU004816/1-521 YITRFQWDMA KYPIKQSLKN ISEIIAKGVT QIDNDLKSRA SAYNNLKGNL bmy_00482T0/1-358 YITRFQWDMA KYPIKQSLKN ISEIIAKDNP SLE------- ---------- ENSP00000379203/1-382 YITRFQWDMA KYPIKQSLKN ISEIIAKGVT QIDNDLKSRA SAYNNLKGNL ENSTTRP00000012519/1-380 YITRFQWDMA KYPIKQSLKN ISEIIAKGVT QIDNDLKSRA SAYNNLKGNL ENSBTAP00000017968/1-382 YITRFQWDMA KYPIKQSLKN ISEIIAKGVT QIDNDLKSRA SAYNNLKGNL 151 200 BACU004816/1-521 QNLERKNAGS LLTRSLAEIV KKDDFVLDSE YLVTLLVVVP KLNHNDWIKQ bmy_00482T0/1-358 -------IGS LLTRSLAEIV KKDDFVLDSE YLVTLLVVVP KLNHNDWIKQ ENSP00000379203/1-382 QNLERKNAGS LLTRSLAEIV KKDDFVLDSE YLVTLLVVVP KLNHNDWIKQ ENSTTRP00000012519/1-380 QNLERKNAGS LLTRSLAEIV KKDDFVLDSE YLVTLLVVVP KLNHNDW-KQ ENSBTAP00000017968/1-382 QNLERKNAGS LLTRSLAEIV KKDDFVLDSE YLVTLLVVVP KLNHNDWIKQ 201 250 BACU004816/1-521 YETLAEMVVP RSSNVLSEDQ DSYLCNVTLF RKAVDDFRHK ARENKFIVRD bmy_00482T0/1-358 YETLAEMVVP RSSNVLSEDQ DSYLCNVTLF RKAVDDFRHK ARENKFIVRD ENSP00000379203/1-382 YETLAEMVVP RSSNVLSEDQ DSYLCNVTLF RKAVDDFRHK ARENKFIVRD ENSTTRP00000012519/1-380 YETLAEMVV- RSSNVLSEDQ DSYLCNVTLF RKAVDDFRHK ARENKFIVRD ENSBTAP00000017968/1-382 YETLAEMVVP RSSNVLSEDQ DSYLCNVTLF RKAVDDFRHK ARENKFIVRD 251 300 BACU004816/1-521 FQYNEEEMKA DKEEMNRLST DKKKQFGPLV RWLKVNFSEA FIAWIHVKAL bmy_00482T0/1-358 FQYNEEEMKA DKEEMNRLST DKKKQFGPLV RWLKVNFSEA FIAWIHVKAL ENSP00000379203/1-382 FQYNEEEMKA DKEEMNRLST DKKKQFGPLV RWLKVNFSEA FIAWIHVKAL ENSTTRP00000012519/1-380 FQYNEEEMKA DKEEMNRLST DKKKQFGPLV RWLKVNFSEA FIAWIHVKAL ENSBTAP00000017968/1-382 FQYNEEEMKA DKEEMNRLST DKKKQFGPLV RWLKVNFSEA FIAWIHVKAL 301 350 BACU004816/1-521 RVFVESVLRY GLPVNFQAML LQPNKKTMKK LREVLYELYK HLDSSAAAII bmy_00482T0/1-358 RVFVESVLRY GLPVNFQAML LQPSKKTMKK LREVLYELYK HLDSSAAAII ENSP00000379203/1-382 RVFVESVLRY GLPVNFQAML LQPNKKTLKK LREVLHELYK HLDSSAAAII ENSTTRP00000012519/1-380 RVFVESVLRY GLPVNFQAML LQPNKKTMKK LREVLYELYK HLDSSAAAII ENSBTAP00000017968/1-382 RVFVESVLRY GLPVNFQAML LQPNKKTMKK LREVLYELYK HLDSSAAAII 351 400 BACU004816/1-521 DNILSVSGDD VPRYSVLVSV DYVIRPGRFP CMLELLLNRR CVFWVEHTLY bmy_00482T0/1-358 DAPMDIPGLN LSQQEYYPYV YYKI------ ---------- ---------- ENSP00000379203/1-382 DAPMDIPGLN LSQQEYYPYV YYKI------ ---------- ---------- ENSTTRP00000012519/1-380 DAPMDIPGLN LSQQEYYPYV YYKI------ ---------- ---------- ENSBTAP00000017968/1-382 DAPMDIPGLN LSQQEYYPYV YYKI------ ---------- ---------- 401 450 BACU004816/1-521 SLLNEHVSSS TFKVMLLPLS NEPAFFSCKD CSLQVERLTC PKLHDAERPF bmy_00482T0/1-358 ---------- ---------- ---------D CNLLEFK--- ---------- ENSP00000379203/1-382 ---------- ---------- ---------D CNLLEFK--- ---------- ENSTTRP00000012519/1-380 ---------- ---------- ---------D CNLLEFK--- ---------- ENSBTAP00000017968/1-382 ---------- ---------- ---------D CNLLEFK--- ---------- 451 500 BACU004816/1-521 QILSEAEVDE CCVTHISTFL ICHTGGGRTM EALSIVHDEL GLSISCGAGE bmy_00482T0/1-358 ---------- ---------- ---------- ---------- ---------- ENSP00000379203/1-382 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000012519/1-380 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000017968/1-382 ---------- ---------- ---------- ---------- ---------- 501 550 BACU004816/1-521 EQQKRLKACC ESCTKVLDAT K bmy_00482T0/1-358 ---------- ---------- - ENSP00000379203/1-382 ---------- ---------- - ENSTTRP00000012519/1-380 ---------- ---------- - ENSBTAP00000017968/1-382 ---------- ---------- -