KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:03:22 2014 Check: 00 .. Name: ENSP00000007414/1-842 Len: 880 Check: 9092 Weight: 1.00 Name: ENSTTRP00000011792/1-770 Len: 880 Check: 136 Weight: 1.00 Name: ENSBTAP00000017982/1-842 Len: 880 Check: 1340 Weight: 1.00 Name: bmy_14048T0/1-850 Len: 880 Check: 3421 Weight: 1.00 Name: BACU006984/1-819 Len: 880 Check: 884 Weight: 1.00 // 1 50 ENSP00000007414/1-842 MDFQERDPPF LPESAQSSKP SSAQQASELW EVVEEPRVRL GTEGVMPERQ ENSTTRP00000011792/1-770 MDFQERDPPS LAESTESAKP STAQQASELW EVVEEPRGRL GAEGIMPERQ ENSBTAP00000017982/1-842 MDFQEWDPPS LAESTQSAKP SGAQQASELW EVVEEPRGRL GAEGIMPERQ bmy_14048T0/1-850 MDFQERDPPS LAESTQSAKP SSAQQASELW EVVEEPRGRL GAEGIMPERQ BACU006984/1-819 MDFQERDPPS LAESTQSAKP SSAQQASELW EVVEEPRGRL GAEGIMPERQ 51 100 ENSP00000007414/1-842 EGHLLKKRKW PLKGWHKRYF VLEDGILHYA TTRQDITKGK LHGSIDVRLS ENSTTRP00000011792/1-770 EGHLLKKRKW PLKGWHKRYF VLEDGILHYA TTRQDITKGK LHGSIDVRLS ENSBTAP00000017982/1-842 EGHLLKKRKW PLKGWHKRYF VLEDGILHYA TTRQDITKGK LHGSIDVRLS bmy_14048T0/1-850 EGHLLKKRKW PLKGWHK--- ---------- -----ITKGK LHGSIDVRLS BACU006984/1-819 EGHLLKKRKW PLKGWHK--- ---------- -----ITKGK LHGSIDVRLS 101 150 ENSP00000007414/1-842 VMSINKKAQR IDLDTEDNIY HLKIKSQDLF QSWVAQLRAH RLAHRLDMPR ENSTTRP00000011792/1-770 VMSINKKAQR IDLDTEDNIY HLKIKSQDLF QSWVAQLRAH RLAQHLDVPR ENSBTAP00000017982/1-842 VMSINKKAQR IDLDTEDNIY HLKIKSQDLF QSWVAQLRAH RSAQHLDVPR bmy_14048T0/1-850 VMSINKKAQR IDLDTEDNIY HLKIKSQDLF QSWVAQLRAH RLAQHLDVPR BACU006984/1-819 VMSINKKAQR IDLDTEDNIY HLKIKSQDLF QSWVAQLRAH RLAQHLDVPR 151 200 ENSP00000007414/1-842 GSLPSTAHRK VPGAQLPTAA TASALPGLGP REKVSSWLRD SDGLDRCSHE ENSTTRP00000011792/1-770 SLLPSTTHRK VPGAQLPAAG SASALPGVGP REKVSSWLRD SDGLDRCSHE ENSBTAP00000017982/1-842 SLLPSTAHWK VTGAQPAVSG SASALPGVGP REKVSSWLRD SDGLDRCSHE bmy_14048T0/1-850 SLLPSTTHRK VPGAQLPAAG SASALPGVGP REKVSSWLRD SDGLDRCSHE BACU006984/1-819 SLLPSTTHRK VPGAQLPAAG SASALPGVGP REKVSSWLRD SDGLDRCSHE 201 250 ENSP00000007414/1-842 LSECQGKLQE LHRLLQSLES LHRIPSAPVI PTHQASVTTE RPKKGKRTSR ENSTTRP00000011792/1-770 LSECQGKLQE LHRLLQSLES LPRIPSAPVI PTHQASVTTE RPKKGKRTSR ENSBTAP00000017982/1-842 LSECQGKLQE LHRLLQSLES LHRIPSAPVI PTHQASVTTE RPKKGKRTSR bmy_14048T0/1-850 LSECQGKLQE LHRLLQSLES LPRIPSAPVI PTHQASVTTE RPKKGKRTSR BACU006984/1-819 LSECQGKLQE LHRLLQSLES LPRTPSAPVI PTHQASVTTE RPKKGKRTSR 251 300 ENSP00000007414/1-842 MWCTQSFAKD DTIGRVGRLH GSVPNLSRYL ESRDSSGTRG LPPTDYAHLQ ENSTTRP00000011792/1-770 IWCTQSFAKD DTIGRVGRLH GSVPNLSRYL ESRDPSGPRG LPPPDYAHVQ ENSBTAP00000017982/1-842 MWCTQSFAKD DTIGRVGRLH GSVPNLSRYL ESRDPSGPRG LPPPDYAHLQ bmy_14048T0/1-850 IWCTQSFAKD DTIGRVGRLH GSVPNLSRYL ESRDPSGPRG LPPPDYAHLQ BACU006984/1-819 IWCTQSFAKD DTIGRVGRLH GSVPNLSRYL ESRDPSGPRG LPPPDYAHLQ 301 350 ENSP00000007414/1-842 RSFWALAQKV HSSLSSVLAA LTMERDQLRD MHQGSELSRM GVSEASTGQR ENSTTRP00000011792/1-770 RSFWALAQKV HSSLSSVLAA LTTERDRLRD LHQGSDPSRL GVSEAAAGPR ENSBTAP00000017982/1-842 RSFWALAQKV HSSLSSVLAA LTAERDRLRD LHPGSEPSRL GVSETSAGPR bmy_14048T0/1-850 RSFWALAQKV HSSLSSVLAA LTTERDRLRD LHQGSEPSRL GVSEAAAGPR BACU006984/1-819 RSFWALAQKV HSSLSSVLAA LTTERDRLRD LHQGSEPSRL GVSEAAAGPR 351 400 ENSP00000007414/1-842 RLHSLSTSSD TTADSFSSLN PEEQEALYMK GRELTPQLSQ TSILSLADSH ENSTTRP00000011792/1-770 RLHSLSVSSD TTADSFSSLN PEEQEALYMK GRELTPQLSQ SSVLSLADSH ENSBTAP00000017982/1-842 RLHSLSISSD TTADSFSSLN PEEQEALYMK GRELTPQLSQ SSVLSLADSH bmy_14048T0/1-850 RLHSLSVSSD TTADSFSSLN PEEQEALYMK GRELTPQLSQ SSVLSLADSH BACU006984/1-819 RLHALSVSSD TTADSFSSLN PEEQEALYMK GRELTPQLSQ SSVLSLADSH 401 450 ENSP00000007414/1-842 TEFFDACEVL LSASSSENEG SEEEESCTSE ITTSLSEEML DLRGAERCQK ENSTTRP00000011792/1-770 TEFFDACEVL LSASSSENEX XXXXXXXXXX XXXXXXXEVL DLR-EERCQK ENSBTAP00000017982/1-842 TEFFDACEVL LSASSSENEG SEEEESCTSE VTTSLSEEVL DLRGAERCQK bmy_14048T0/1-850 TEFFDACEVL LSASSSENEG SEEEESCTSE VTTSLSEEVL DLRGAERCQK BACU006984/1-819 TEFFDACEVL LSASSSENEG SEEEESCASE VTTSLSEEVL DLRGAERCQK 451 500 ENSP00000007414/1-842 GGCVPGRPMG PPRRRCLPAA SGPGADVSLW NILRNNIGKD LSKVSMPVQL ENSTTRP00000011792/1-770 -GCVPGGAVG PPRRRCLPAA SGPGADVSLW NILWNNIGKD LSKVSMPVQL ENSBTAP00000017982/1-842 ATCVPGAAVG PPRRRCLPAA SGPGTDVSLW NILRNNIGKD LSKVSMPVQL bmy_14048T0/1-850 -----GGAVG PPRRQCLPAA SGPGADVSLW NILRNNIGKD LSKVSMPVQL BACU006984/1-819 -----GGAVG PPRRRCLPAA SGPGADVSLW NILRNNIGKD LSKVSMPVQL 501 550 ENSP00000007414/1-842 NEPLNTLQRL CEELEYSSLL DQASRIADPC ERMVYIAAFA VSAYSSTYHR ENSTTRP00000011792/1-770 NEPLSTLQRL CEELEYSSLL DQASQTTDPC ERMVYIAAFA VSAYSSTYHR ENSBTAP00000017982/1-842 NEPLNTLQRL CEELEYSSLL DRASRTADPC ERMVYIAAFA VSAYSSTYHR bmy_14048T0/1-850 NEPLNTLQRL CEELEYSSLL DEASHTTDPC ERMVYIAAFA VSAYSSTYHR BACU006984/1-819 NEPLNTLQRL CEELEYSGLL DQASHTTDPC ERMVYIAAFA VSAYSSTYHR 551 600 ENSP00000007414/1-842 AGCKPFNPVL GETYECERPD RGFRFISEQV ---------- ------SHHP ENSTTRP00000011792/1-770 AGCKPFNPVL GETYECERPD RGFRFISEQX ---------- ------XXXX ENSBTAP00000017982/1-842 AGCKPFNPVL GETYECERPD RGFRFISEQV ---------- ------SHHP bmy_14048T0/1-850 AGCKPFNPVL GETYECERPD RGFRFISEQV RPWKKWAGRG SHVAKAGEHP BACU006984/1-819 AGCKPFNPVL GETYECERPD RGFRFISEQV ---------- ------SHHP 601 650 ENSP00000007414/1-842 ---------- --PISACHAE SENFAFW--- -------QDM KWKNKFWGKS ENSTTRP00000011792/1-770 ---------- --XXXXXXXX XXXXXXW--- -------QDM KWKNKFWGKS ENSBTAP00000017982/1-842 ---------- --PISACHAE SENFIFW--- -------QDM KWKNKFWGKS bmy_14048T0/1-850 GFKGPGRGSP TTPPSRRAMR SLRTSYSGKS LSLPHPTPDM KWKNKFWGKS BACU006984/1-819 ---------- --PISACHAE SENFIFW--- -------QDM KWKNKFWGKS 651 700 ENSP00000007414/1-842 LEIVPVGTVN VSLPRFGDHF EWNKVTSCIH NVLSGQRWIE HYGEVLIRNT ENSTTRP00000011792/1-770 LEIVPVGMVN VSLPRFGDHF EWNKVTSCIH NILSGQRWIE HYGEVLIRNT ENSBTAP00000017982/1-842 LEIVPVGTVN VSLPRFGDHF EWNKVTSCIH NILSGQRWIE HYGEVLIRNT bmy_14048T0/1-850 LEIVPVGMVN VSLPRFGDHF EWNKVTSCIH NILSGQRWIE HYGEVLIRNT BACU006984/1-819 LEIVPVGMVN VSLPRFGDHF EWNKVTSCIH NILSGQRWIE HYGEVLIRNT 701 750 ENSP00000007414/1-842 QDSSCHCKIT FCKAKYWSSN VHEVQGAVLS RSGRVLHRLF GKWHEGLYRG ENSTTRP00000011792/1-770 QDSSCHCKIT FCKAKYWSSN VHEVQGAVFS RSGRVLHRLF GKWPEGLYRG ENSBTAP00000017982/1-842 QDSSCHCKLT FCKAKYWSSN VHEVQGAVFS RSGRVLHRLF GKWHEGLYRG bmy_14048T0/1-850 QDSSCHCKIT FCKAKYWSSN VHEVQGAVFS RSGRVLHRLF GKWPEGLYRG BACU006984/1-819 QDSSCHCKIT FCKAKYWSSN VHEVQGAVFS RSGRVLHRLF GKWPEGLYRG 751 800 ENSP00000007414/1-842 PTPGGQCIWK PNSMPPDHER NFGFTQFALE LNELTAELKR SLPSTDTRLR ENSTTRP00000011792/1-770 PPPGGQCIWK PNSMPPNYER NFGFTQFALE LNELTAELKR SLPSTDTRLR ENSBTAP00000017982/1-842 PPPGGQCIWK PNSMPPNYER NFGFTQFALE LNELTAELKR SLPSTDTRLR bmy_14048T0/1-850 PPPG------ -DSMPPNYER NFGFTQFALE LNELTAELKR SLPSTDTRLR BACU006984/1-819 PPPGGQCIWK PNSMPPNYER NFGFTQFALE LNELTAELKR SLPSTDTRLR 801 850 ENSP00000007414/1-842 PDQRYLEEGN IQAAEAQKRR IEQLQRDRRK VMEENNIVHQ ARFFRRQTDS ENSTTRP00000011792/1-770 PDQRYLEEGN ---------- ---------- ---------- ---------- ENSBTAP00000017982/1-842 PDQRYLEEGN IQAAEAQKRR IEQLQRDRRK VMEENNIVHQ ARFFRRQTDS bmy_14048T0/1-850 PDQRYLEEGN IQAAEAQKRR IEQLQRDRRK VMEENNIVHQ ARFFRRQTDS BACU006984/1-819 PDQRYLEEGN IQAAEAQKRR IEQLQRDRRK VMEENNIVHQ ARFFRRQTDS 851 900 ENSP00000007414/1-842 SGKEWWVTNN TYWRLRAEPG YGNMDGAVLW ENSTTRP00000011792/1-770 ---------- ---------- ---------- ENSBTAP00000017982/1-842 SGKEWWVTNN TYWQLRAEPG YGNLDGAVLW bmy_14048T0/1-850 SGKEWWVTNN TYWRLRAEPG YGNLDGAVLW BACU006984/1-819 SGKEWWVTNN TYWRLRAEPG YGNLDGAVLW