KEY:
ENSP* - Homo sapiens (Human)
ENSBTA* - Bos taurus (Cow)
ENSTTR* - Tursiops truncatus (Dolphin)
bmy_* - Balaena mysticetus (Bowhead whale)
BACU* - Balaenoptera acutorostrata (Minke whale)
Copy from below the line for a valid .msf file.
----------------------------------------------------------------------------------
NoName MSF: 5 Type: P Thu May 15 17:03:22 2014 Check: 00 ..
Name: ENSP00000007414/1-842 Len: 880 Check: 9092 Weight: 1.00
Name: ENSTTRP00000011792/1-770 Len: 880 Check: 136 Weight: 1.00
Name: ENSBTAP00000017982/1-842 Len: 880 Check: 1340 Weight: 1.00
Name: bmy_14048T0/1-850 Len: 880 Check: 3421 Weight: 1.00
Name: BACU006984/1-819 Len: 880 Check: 884 Weight: 1.00
//
1 50
ENSP00000007414/1-842 MDFQERDPPF LPESAQSSKP SSAQQASELW EVVEEPRVRL GTEGVMPERQ
ENSTTRP00000011792/1-770 MDFQERDPPS LAESTESAKP STAQQASELW EVVEEPRGRL GAEGIMPERQ
ENSBTAP00000017982/1-842 MDFQEWDPPS LAESTQSAKP SGAQQASELW EVVEEPRGRL GAEGIMPERQ
bmy_14048T0/1-850 MDFQERDPPS LAESTQSAKP SSAQQASELW EVVEEPRGRL GAEGIMPERQ
BACU006984/1-819 MDFQERDPPS LAESTQSAKP SSAQQASELW EVVEEPRGRL GAEGIMPERQ
51 100
ENSP00000007414/1-842 EGHLLKKRKW PLKGWHKRYF VLEDGILHYA TTRQDITKGK LHGSIDVRLS
ENSTTRP00000011792/1-770 EGHLLKKRKW PLKGWHKRYF VLEDGILHYA TTRQDITKGK LHGSIDVRLS
ENSBTAP00000017982/1-842 EGHLLKKRKW PLKGWHKRYF VLEDGILHYA TTRQDITKGK LHGSIDVRLS
bmy_14048T0/1-850 EGHLLKKRKW PLKGWHK--- ---------- -----ITKGK LHGSIDVRLS
BACU006984/1-819 EGHLLKKRKW PLKGWHK--- ---------- -----ITKGK LHGSIDVRLS
101 150
ENSP00000007414/1-842 VMSINKKAQR IDLDTEDNIY HLKIKSQDLF QSWVAQLRAH RLAHRLDMPR
ENSTTRP00000011792/1-770 VMSINKKAQR IDLDTEDNIY HLKIKSQDLF QSWVAQLRAH RLAQHLDVPR
ENSBTAP00000017982/1-842 VMSINKKAQR IDLDTEDNIY HLKIKSQDLF QSWVAQLRAH RSAQHLDVPR
bmy_14048T0/1-850 VMSINKKAQR IDLDTEDNIY HLKIKSQDLF QSWVAQLRAH RLAQHLDVPR
BACU006984/1-819 VMSINKKAQR IDLDTEDNIY HLKIKSQDLF QSWVAQLRAH RLAQHLDVPR
151 200
ENSP00000007414/1-842 GSLPSTAHRK VPGAQLPTAA TASALPGLGP REKVSSWLRD SDGLDRCSHE
ENSTTRP00000011792/1-770 SLLPSTTHRK VPGAQLPAAG SASALPGVGP REKVSSWLRD SDGLDRCSHE
ENSBTAP00000017982/1-842 SLLPSTAHWK VTGAQPAVSG SASALPGVGP REKVSSWLRD SDGLDRCSHE
bmy_14048T0/1-850 SLLPSTTHRK VPGAQLPAAG SASALPGVGP REKVSSWLRD SDGLDRCSHE
BACU006984/1-819 SLLPSTTHRK VPGAQLPAAG SASALPGVGP REKVSSWLRD SDGLDRCSHE
201 250
ENSP00000007414/1-842 LSECQGKLQE LHRLLQSLES LHRIPSAPVI PTHQASVTTE RPKKGKRTSR
ENSTTRP00000011792/1-770 LSECQGKLQE LHRLLQSLES LPRIPSAPVI PTHQASVTTE RPKKGKRTSR
ENSBTAP00000017982/1-842 LSECQGKLQE LHRLLQSLES LHRIPSAPVI PTHQASVTTE RPKKGKRTSR
bmy_14048T0/1-850 LSECQGKLQE LHRLLQSLES LPRIPSAPVI PTHQASVTTE RPKKGKRTSR
BACU006984/1-819 LSECQGKLQE LHRLLQSLES LPRTPSAPVI PTHQASVTTE RPKKGKRTSR
251 300
ENSP00000007414/1-842 MWCTQSFAKD DTIGRVGRLH GSVPNLSRYL ESRDSSGTRG LPPTDYAHLQ
ENSTTRP00000011792/1-770 IWCTQSFAKD DTIGRVGRLH GSVPNLSRYL ESRDPSGPRG LPPPDYAHVQ
ENSBTAP00000017982/1-842 MWCTQSFAKD DTIGRVGRLH GSVPNLSRYL ESRDPSGPRG LPPPDYAHLQ
bmy_14048T0/1-850 IWCTQSFAKD DTIGRVGRLH GSVPNLSRYL ESRDPSGPRG LPPPDYAHLQ
BACU006984/1-819 IWCTQSFAKD DTIGRVGRLH GSVPNLSRYL ESRDPSGPRG LPPPDYAHLQ
301 350
ENSP00000007414/1-842 RSFWALAQKV HSSLSSVLAA LTMERDQLRD MHQGSELSRM GVSEASTGQR
ENSTTRP00000011792/1-770 RSFWALAQKV HSSLSSVLAA LTTERDRLRD LHQGSDPSRL GVSEAAAGPR
ENSBTAP00000017982/1-842 RSFWALAQKV HSSLSSVLAA LTAERDRLRD LHPGSEPSRL GVSETSAGPR
bmy_14048T0/1-850 RSFWALAQKV HSSLSSVLAA LTTERDRLRD LHQGSEPSRL GVSEAAAGPR
BACU006984/1-819 RSFWALAQKV HSSLSSVLAA LTTERDRLRD LHQGSEPSRL GVSEAAAGPR
351 400
ENSP00000007414/1-842 RLHSLSTSSD TTADSFSSLN PEEQEALYMK GRELTPQLSQ TSILSLADSH
ENSTTRP00000011792/1-770 RLHSLSVSSD TTADSFSSLN PEEQEALYMK GRELTPQLSQ SSVLSLADSH
ENSBTAP00000017982/1-842 RLHSLSISSD TTADSFSSLN PEEQEALYMK GRELTPQLSQ SSVLSLADSH
bmy_14048T0/1-850 RLHSLSVSSD TTADSFSSLN PEEQEALYMK GRELTPQLSQ SSVLSLADSH
BACU006984/1-819 RLHALSVSSD TTADSFSSLN PEEQEALYMK GRELTPQLSQ SSVLSLADSH
401 450
ENSP00000007414/1-842 TEFFDACEVL LSASSSENEG SEEEESCTSE ITTSLSEEML DLRGAERCQK
ENSTTRP00000011792/1-770 TEFFDACEVL LSASSSENEX XXXXXXXXXX XXXXXXXEVL DLR-EERCQK
ENSBTAP00000017982/1-842 TEFFDACEVL LSASSSENEG SEEEESCTSE VTTSLSEEVL DLRGAERCQK
bmy_14048T0/1-850 TEFFDACEVL LSASSSENEG SEEEESCTSE VTTSLSEEVL DLRGAERCQK
BACU006984/1-819 TEFFDACEVL LSASSSENEG SEEEESCASE VTTSLSEEVL DLRGAERCQK
451 500
ENSP00000007414/1-842 GGCVPGRPMG PPRRRCLPAA SGPGADVSLW NILRNNIGKD LSKVSMPVQL
ENSTTRP00000011792/1-770 -GCVPGGAVG PPRRRCLPAA SGPGADVSLW NILWNNIGKD LSKVSMPVQL
ENSBTAP00000017982/1-842 ATCVPGAAVG PPRRRCLPAA SGPGTDVSLW NILRNNIGKD LSKVSMPVQL
bmy_14048T0/1-850 -----GGAVG PPRRQCLPAA SGPGADVSLW NILRNNIGKD LSKVSMPVQL
BACU006984/1-819 -----GGAVG PPRRRCLPAA SGPGADVSLW NILRNNIGKD LSKVSMPVQL
501 550
ENSP00000007414/1-842 NEPLNTLQRL CEELEYSSLL DQASRIADPC ERMVYIAAFA VSAYSSTYHR
ENSTTRP00000011792/1-770 NEPLSTLQRL CEELEYSSLL DQASQTTDPC ERMVYIAAFA VSAYSSTYHR
ENSBTAP00000017982/1-842 NEPLNTLQRL CEELEYSSLL DRASRTADPC ERMVYIAAFA VSAYSSTYHR
bmy_14048T0/1-850 NEPLNTLQRL CEELEYSSLL DEASHTTDPC ERMVYIAAFA VSAYSSTYHR
BACU006984/1-819 NEPLNTLQRL CEELEYSGLL DQASHTTDPC ERMVYIAAFA VSAYSSTYHR
551 600
ENSP00000007414/1-842 AGCKPFNPVL GETYECERPD RGFRFISEQV ---------- ------SHHP
ENSTTRP00000011792/1-770 AGCKPFNPVL GETYECERPD RGFRFISEQX ---------- ------XXXX
ENSBTAP00000017982/1-842 AGCKPFNPVL GETYECERPD RGFRFISEQV ---------- ------SHHP
bmy_14048T0/1-850 AGCKPFNPVL GETYECERPD RGFRFISEQV RPWKKWAGRG SHVAKAGEHP
BACU006984/1-819 AGCKPFNPVL GETYECERPD RGFRFISEQV ---------- ------SHHP
601 650
ENSP00000007414/1-842 ---------- --PISACHAE SENFAFW--- -------QDM KWKNKFWGKS
ENSTTRP00000011792/1-770 ---------- --XXXXXXXX XXXXXXW--- -------QDM KWKNKFWGKS
ENSBTAP00000017982/1-842 ---------- --PISACHAE SENFIFW--- -------QDM KWKNKFWGKS
bmy_14048T0/1-850 GFKGPGRGSP TTPPSRRAMR SLRTSYSGKS LSLPHPTPDM KWKNKFWGKS
BACU006984/1-819 ---------- --PISACHAE SENFIFW--- -------QDM KWKNKFWGKS
651 700
ENSP00000007414/1-842 LEIVPVGTVN VSLPRFGDHF EWNKVTSCIH NVLSGQRWIE HYGEVLIRNT
ENSTTRP00000011792/1-770 LEIVPVGMVN VSLPRFGDHF EWNKVTSCIH NILSGQRWIE HYGEVLIRNT
ENSBTAP00000017982/1-842 LEIVPVGTVN VSLPRFGDHF EWNKVTSCIH NILSGQRWIE HYGEVLIRNT
bmy_14048T0/1-850 LEIVPVGMVN VSLPRFGDHF EWNKVTSCIH NILSGQRWIE HYGEVLIRNT
BACU006984/1-819 LEIVPVGMVN VSLPRFGDHF EWNKVTSCIH NILSGQRWIE HYGEVLIRNT
701 750
ENSP00000007414/1-842 QDSSCHCKIT FCKAKYWSSN VHEVQGAVLS RSGRVLHRLF GKWHEGLYRG
ENSTTRP00000011792/1-770 QDSSCHCKIT FCKAKYWSSN VHEVQGAVFS RSGRVLHRLF GKWPEGLYRG
ENSBTAP00000017982/1-842 QDSSCHCKLT FCKAKYWSSN VHEVQGAVFS RSGRVLHRLF GKWHEGLYRG
bmy_14048T0/1-850 QDSSCHCKIT FCKAKYWSSN VHEVQGAVFS RSGRVLHRLF GKWPEGLYRG
BACU006984/1-819 QDSSCHCKIT FCKAKYWSSN VHEVQGAVFS RSGRVLHRLF GKWPEGLYRG
751 800
ENSP00000007414/1-842 PTPGGQCIWK PNSMPPDHER NFGFTQFALE LNELTAELKR SLPSTDTRLR
ENSTTRP00000011792/1-770 PPPGGQCIWK PNSMPPNYER NFGFTQFALE LNELTAELKR SLPSTDTRLR
ENSBTAP00000017982/1-842 PPPGGQCIWK PNSMPPNYER NFGFTQFALE LNELTAELKR SLPSTDTRLR
bmy_14048T0/1-850 PPPG------ -DSMPPNYER NFGFTQFALE LNELTAELKR SLPSTDTRLR
BACU006984/1-819 PPPGGQCIWK PNSMPPNYER NFGFTQFALE LNELTAELKR SLPSTDTRLR
801 850
ENSP00000007414/1-842 PDQRYLEEGN IQAAEAQKRR IEQLQRDRRK VMEENNIVHQ ARFFRRQTDS
ENSTTRP00000011792/1-770 PDQRYLEEGN ---------- ---------- ---------- ----------
ENSBTAP00000017982/1-842 PDQRYLEEGN IQAAEAQKRR IEQLQRDRRK VMEENNIVHQ ARFFRRQTDS
bmy_14048T0/1-850 PDQRYLEEGN IQAAEAQKRR IEQLQRDRRK VMEENNIVHQ ARFFRRQTDS
BACU006984/1-819 PDQRYLEEGN IQAAEAQKRR IEQLQRDRRK VMEENNIVHQ ARFFRRQTDS
851 900
ENSP00000007414/1-842 SGKEWWVTNN TYWRLRAEPG YGNMDGAVLW
ENSTTRP00000011792/1-770 ---------- ---------- ----------
ENSBTAP00000017982/1-842 SGKEWWVTNN TYWQLRAEPG YGNLDGAVLW
bmy_14048T0/1-850 SGKEWWVTNN TYWRLRAEPG YGNLDGAVLW
BACU006984/1-819 SGKEWWVTNN TYWRLRAEPG YGNLDGAVLW