KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:03:22 2014 Check: 00 .. Name: bmy_11102T0/1-558 Len: 781 Check: 9979 Weight: 1.00 Name: ENSP00000446100/1-773 Len: 781 Check: 2483 Weight: 1.00 Name: ENSBTAP00000017983/1-673 Len: 781 Check: 5876 Weight: 1.00 Name: BACU009718/1-616 Len: 781 Check: 3318 Weight: 1.00 Name: ENSTTRP00000006427/1-673 Len: 781 Check: 4744 Weight: 1.00 // 1 50 bmy_11102T0/1-558 ---------- ---------- ---------- ---------- ---------- ENSP00000446100/1-773 MDVTSSSGGG GDPRQIEETK PLLGGDVSAP EGTKMGAVPC RRALLLCNGM ENSBTAP00000017983/1-673 ---------- ---------- ---------- ---------- ---------- BACU009718/1-616 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000006427/1-673 ---------- ---------- ---------- ---------- ---------- 51 100 bmy_11102T0/1-558 ---------- ---------- ---------- ---------- ---------- ENSP00000446100/1-773 RYKLLQEGDI QVCVIRHPRT FLSKILTSKF LRRWEPHHLT LADNSLASAT ENSBTAP00000017983/1-673 ---------- ---------- ---------- ---------- ---------- BACU009718/1-616 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000006427/1-673 ---------- ---------- ---------- ---------- ---------- 101 150 bmy_11102T0/1-558 --------MT WRESGEVICK TWISLSEGDP KLHPLCVLMH VYTCVAQEKK ENSP00000446100/1-773 PTGYMENSVS YSAIEDVQLL SW----ENAP K---YCLQLT IPGGTVL-LQ ENSBTAP00000017983/1-673 PTGYMENSVS YSAIEDVQLL SW----ENAP K---YCLQLT IPGGTVL-LQ BACU009718/1-616 ---------- ---------- -M----DGAA G---RC---- ---------- ENSTTRP00000006427/1-673 PTGYMENSVS YSAIEDVQLL SW----ENAP K---YCLQLT IPGGTVL-LQ 151 200 bmy_11102T0/1-558 AANSYLRDQW FHSLQWKKKI YKYKKVLSNP SRWEVVLKEI RTLVDMALTS ENSP00000446100/1-773 AANSYLRDQW FHSLQWKKKI YKYKKVLSNP SRWEVVLKEI RTLVDMALTS ENSBTAP00000017983/1-673 AANSYLRDQW FHSLQWKKKI YKYKKVLSNP SRWEVVLKEI RTLVDMALTS BACU009718/1-616 -------PSR SPALDAEKKI YKYKKVLSNP SRWEVVLKEI RTLVDMALTS ENSTTRP00000006427/1-673 XXXXXXXXXX XXXXXXXKKI YKYKKVLSNP SRWEVVLKEI RTLVDMALTS 201 250 bmy_11102T0/1-558 PLQDDSINQA PLEIVSKLLS E--------- -----AIAPL LENNHPPPDL ENSP00000446100/1-773 PLQDDSINQA PLEIVSKLLS ENTNLTTQEH ENIIVAIAPL LENNHPPPDL ENSBTAP00000017983/1-673 PLQDDSINQA PLEIVSKLLS ENTNLTTQEH ENIIVAIAPL LENNHPPPDL BACU009718/1-616 PLQDDSINQA PLEIVSKLLS ENTNLTTQEH ENIIVAIAPL LENNHPPPDL ENSTTRP00000006427/1-673 PLHDDSINQA PLEIVSKLLS ENTNLTTQEH ENIIVAIAPL LENNHPPPDL 251 300 bmy_11102T0/1-558 CEFFCKHCRE RPRSMVVIEV FTPVVQRILK HNMDFGKCPR LRLFTQEYIL ENSP00000446100/1-773 CEFFCKHCRE RPRSMVVIEV FTPVVQRILK HNMDFGKCPR LRLFTQEYIL ENSBTAP00000017983/1-673 CEFFCKHCRE RPRSMVVIEV FTPVVQRILK HNMDFGKCPR LRLFTQEYIL BACU009718/1-616 CEFFCKHCRE RPRSMVVIEV FTPVVQRILK HNMDFGKCPR LRLFTQEYIL ENSTTRP00000006427/1-673 CEFFCKHCRE RPRSMVVIEV FTPVVQRILK HNMDFGKCPR LRLFTQEYIL 301 350 bmy_11102T0/1-558 ALNELNAGME VVKKFIQSMH GPTGHCPHPR VLPNLVAVCL AAIYSCYEEF ENSP00000446100/1-773 ALNELNAGME VVKKFIQSMH GPTGHCPHPR VLPNLVAVCL AAIYSCYEEF ENSBTAP00000017983/1-673 ALNELNAGME VVKKFIQSMH GPTGHCPHPR VLPNLVAVCL AAIYSCYEEF BACU009718/1-616 ALNELNAGME VVKKFIQSMH GPTGHCPHPR VLPNLVAVCL AAIYSCYEEF ENSTTRP00000006427/1-673 ALNELNAGME VVKKFIQSMH GPTGHCPHPR VLPNLVAVCL AAIYSCYEEF 351 400 bmy_11102T0/1-558 INSRDNSPSL KEIRNGCQQP CDRKPTLPLR LLHPSPDLVS QEATLSEARL ENSP00000446100/1-773 INSRDNSPSL KEIRNGCQQP CDRKPTLPLR LLHPSPDLVS QEATLSEARL ENSBTAP00000017983/1-673 INSRDNSPSL KEIRNGCQQP CDRKPTLPLR LLHPSPDLVS QEATLSEARL BACU009718/1-616 INSRDNSPSL KEIRNGCQQP CDRKPTLPLR LLHPSPDLVS QEATLSEARL ENSTTRP00000006427/1-673 INSRDNSPSL KEIRNGCQQP CDRKPTLPLR LLHPSPDLVS QEATLSEARL 401 450 bmy_11102T0/1-558 KSVVVASSEI HVEVEPASTA KPALTASVGN DSEPNLIDCL MVSPACSTMS ENSP00000446100/1-773 KSVVVASSEI HVEVERTSTA KPALTASAGN DSEPNLIDCL MVSPACSTMS ENSBTAP00000017983/1-673 KSVVVASSEI HVEVEPASTA KPALTASAGD DNEPNLIDCL MVSPACSTMS BACU009718/1-616 KSVVVASSEI HVEVEPASTA KPALTASVGN DSEPNLIDCL MVSPACSTMS ENSTTRP00000006427/1-673 KSVVVASSEI HVEVEPASTA KPALTASVGN DSEPNLIDCL MVSPACSTMS 451 500 bmy_11102T0/1-558 IELGPQADRT LGCYVEILKL LSDYDDWRPS LASLLQPIPF PKEALAHEKF ENSP00000446100/1-773 IELGPQADRT LGCYVEILKL LSDYDDWRPS LASLLQPIPF PKEALAHEKF ENSBTAP00000017983/1-673 IELGPQADRT LGCYVEILKL LSDYDDWRPS LASLLQPIPF PKEALAHEKF BACU009718/1-616 IELGPQADRT LGCYVEILKL LSDYDDWRPS LASLLQPIPF PKEALAHEKF ENSTTRP00000006427/1-673 IELGPQADRT LGCYVEILKL LSDYDDWRPS LASLLQPIPF PKEALAHEKF 501 550 bmy_11102T0/1-558 TKELKYVIQR FAEDPRQE-- ---------- ---------- ---------- ENSP00000446100/1-773 TKELKYVIQR FAEDPRQEVH SCLLSVRAGK DGWFQLYSPG GVACDDDGEL ENSBTAP00000017983/1-673 TKELKYVIQR FAEDPRQEVH SCLLSVRAGK DGWFQLYSPG GVACDDDGEL BACU009718/1-616 TKELKYVIQR FAEDPRQEVH SCLLSVRAGK DGWFQLYSPG GVACDDDGEL ENSTTRP00000006427/1-673 TKELKYVIQR FAEDPRQEVH SCLLSVRAGK DGWFQLYSPG GVACDDDGEL 551 600 bmy_11102T0/1-558 ----VHILMG SCYKTKKFLL SLAENKLGPC MLLALRGNQT MVEILCLMLE ENSP00000446100/1-773 FASMVHILMG SCYKTKKFLL SLAENKLGPC MLLALRGNQT MVEILCLMLE ENSBTAP00000017983/1-673 FASMVHILMG SCYKTKKFLL SLAENKLGPC MLLALRGNQT MVEILCLMLE BACU009718/1-616 FASMVHILMG SCYKTKKFLL SLAENKLGPC MLLALRGNQT MVEILCLMLE ENSTTRP00000006427/1-673 FASMVHILMG SCYKTKKFLL SLAENKLGPC MLLALRGNQT MVEILCLMLE 601 650 bmy_11102T0/1-558 YNIIDNNDTQ LQIISTLEST GVGKRMYEQL CDRQRELKEL QRKGGPTRLT ENSP00000446100/1-773 YNIIDNNDTQ LQIISTLEST DVGKRMYEQL CDRQRELKEL QRKGGPTRLT ENSBTAP00000017983/1-673 YNIIDNNDTQ LQIISTLEST GVGKRMYEQL CDRQRELKEL QRKGGPTRLT BACU009718/1-616 YNIIDNNDTQ LQIISTLEST GVGKRMYEQL CDRQRELKEL ---------- ENSTTRP00000006427/1-673 YNIIDNNDTQ LQIISTLEST GVGKRMYEQL CDRQRELKEL QRKGGPTRLT 651 700 bmy_11102T0/1-558 LPSKSTR--- PQQLSPPP-- -------AFP SCTCNCP--- ---------- ENSP00000446100/1-773 LPSKSTDADL ARLLSSGSFG NLENLSLAFT NVTSACAEHL IKLPSLKQLN ENSBTAP00000017983/1-673 LPSKSTDADL ARLLSSGSFG NLENLSLAFT NVTSACAEHL IKLPSLKQLN BACU009718/1-616 ------DADL ARLLSSGSFG NLENLSLAFT NVTSACAEHL IKLPSLKQLN ENSTTRP00000006427/1-673 LPSKSTDADL ARLLSSGSFG NLENLSLAFT NVTSACAEHL IKLPSLKQLN 701 750 bmy_11102T0/1-558 LWGP------ --------SD LMTVSVC--- ------LSLD SHE------- ENSP00000446100/1-773 LWSTQFGDAG LRLLSEHLTM LQVLNLCETP VTDAGLLALS SMKSLCSLNM ENSBTAP00000017983/1-673 LWSTQFGDAG LRLLSEHLTM LQVLNLCETP VTDAGLLALS SMKSLCSLNM BACU009718/1-616 LWSTQFGDAG LRLLSEHLTM LQVLNLCETP VTDAGLLALS SMKSLCSLNM ENSTTRP00000006427/1-673 LWSTQFGDAG LRLLSEHLTM LQVLNLCETP VTDAGLLALS SMKSLCSLNM 751 800 bmy_11102T0/1-558 ESLQLKHEQH QALSGHLRRP E--------- - ENSP00000446100/1-773 NSTKLSADTY EDLKAKLPNL KEVDVRYTEA W ENSBTAP00000017983/1-673 NSTKLSADTY EDLKAKLPNL KEVDVRYTEA W BACU009718/1-616 NSTKLSADTY EDLKAKLPNL KEVDVRYTEA W ENSTTRP00000006427/1-673 NSTKLSADTY EDLKAKLPNL KEVDVRYTEA W