KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 17:03:23 2014 Check: 00 .. Name: ENSBTAP00000017984/1-234 Len: 305 Check: 6550 Weight: 1.00 Name: ENSP00000364964/1-241 Len: 305 Check: 1932 Weight: 1.00 Name: bmy_03140T0/1-269 Len: 305 Check: 8215 Weight: 1.00 Name: ENSTTRP00000013378/1-239 Len: 305 Check: 1160 Weight: 1.00 // 1 50 ENSBTAP00000017984/1-234 MTLVLQLLPL LLLSRALGDP GASLNGHPGD RVNLSCIGVS QPTRWVWAPR ENSP00000364964/1-241 MAVFLQLLP- LLLSRAQGNP GASLDGRPGD RVNLSCGGVS HPIRWVWAPS bmy_03140T0/1-269 ---------- ---------- --SLDGHPGD RVNLSCVGVS QPTRWVWAPR ENSTTRP00000013378/1-239 MALVLQLLP- LLLSRAQGNP GASLDGHPGD RVNLSCVGVS QPTRWVWAPR 51 100 ENSBTAP00000017984/1-234 FPACKGLSKG RRPILWASPS GTPTVPPAQP FAGRINALDL GIRRLELLLS ENSP00000364964/1-241 FPACKGLSKG RRPILWASSS GTPTVPPLQP FVGRLRSLDS GIRRLELLLS bmy_03140T0/1-269 FPACKGLSKG RRAILLASPS GTPTVSPVQP FAGRLRALDL DIRRLELLLS ENSTTRP00000013378/1-239 FPACKGLSKG RRAILLASPN GTPTVSPVQP FAGRLRALDL DIRRLELLLS 101 150 ENSBTAP00000017984/1-234 AGDSGTFICK GRQEEESRTE LHVLGDRAYC KAL------- ---------- ENSP00000364964/1-241 AGDSGTFFCK GRHEDESRTV LHVLGDRTYC KAPGPTH--- ---------- bmy_03140T0/1-269 AGDSGTFICK GRQENESRTE LHVLGDRAYC RAPGPTHGRS RPSHKGDLTQ ENSTTRP00000013378/1-239 AGDSGTFIC- GR-ENESRTE LHVLGDRA-C RARGLTH--- ---------- 151 200 ENSBTAP00000017984/1-234 ---------- ---------- ---------- ---------- GSSYSQILIP ENSP00000364964/1-241 ---------- ---------- ---------- ---------- GSVYPQLLIP bmy_03140T0/1-269 THAPVREGSL VWGFRSGRAS SLSPHPDLGI HRYPASNVPA GSVYPQILIP ENSTTRP00000013378/1-239 ---------- ---------- ---------- ---------- GSVYPQTLIP 201 250 ENSBTAP00000017984/1-234 LLGAGLVLGL GVLGWACWRR RRSPPHPPEP TPRFALSPPH SSTRESRAPE ENSP00000364964/1-241 LLGAGLVLGL GALGLVWWLH RRLPPQPIRP LPRFA---PL VKT------E bmy_03140T0/1-269 LLGAGLVLGL GVLGWACWLR RRSPPHPPRP PPRFV---PL VKA------E ENSTTRP00000013378/1-239 LLGAGLVLGL GVLGWACWLR RRSPPHPPRP PPRFV---PF VKA------E 251 300 ENSBTAP00000017984/1-234 ARRGGRAQDA RGPGS-GAEP A-----LRRP GSYGPQKFQP TVPSGPC--- ENSP00000364964/1-241 PQRPVKEEEP KIPGDLDQEP SLLYADLDHL ALSRPRRLST ADPADASTIY bmy_03140T0/1-269 LQRPGEEEEP KIAGDLDQEP SLLYADLDHM ALRRSCRLSP MVPADSSTTY ENSTTRP00000013378/1-239 PQRPVEEEEP KIAGDLDQEP SLLYADLDHT ALRRSCRLSP VVPADASTTY 301 350 ENSBTAP00000017984/1-234 ----- ENSP00000364964/1-241 AVVV- bmy_03140T0/1-269 ----- ENSTTRP00000013378/1-239 AVVVR