KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:03:23 2014 Check: 00 .. Name: ENSTTRP00000005889/1-972 Len: 972 Check: 8852 Weight: 1.00 Name: bmy_11377T0/1-793 Len: 972 Check: 3421 Weight: 1.00 Name: ENSP00000392094/1-972 Len: 972 Check: 3064 Weight: 1.00 Name: ENSBTAP00000017986/1-972 Len: 972 Check: 3516 Weight: 1.00 Name: BACU008416/1-972 Len: 972 Check: 2108 Weight: 1.00 // 1 50 ENSTTRP00000005889/1-972 MDTDLYDEFG NYIGPELDSD EDDDELGRET KDLDEXXXXX XXXXXXXXXX bmy_11377T0/1-793 MNP------- SCIGRSLDHS ---------- ---------- ---------- ENSP00000392094/1-972 MDTDLYDEFG NYIGPELDSD EDDDELGRET KDLDEMDDDD DDDDVGDHDD ENSBTAP00000017986/1-972 MDTDLYDEFG NYIGPELDSD EDDDELGRET KDLDEVDEDE DDDDVGDHDE BACU008416/1-972 MDTDLYDEFG NYIGPELDSD EDDDELGRET KDLDEVDDDD DDDELGDHDE 51 100 ENSTTRP00000005889/1-972 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XPIIKPVKTK bmy_11377T0/1-793 ---------- ---------- ---------- ---------- ---------- ENSP00000392094/1-972 DHPGMEVVLH EDKKYYPTAE EVYGPEVETI VQEEDTQPLT EPIIKPVKTK ENSBTAP00000017986/1-972 DHPGMEVVLH EDKKYYPTAE EVYGPEVETI VQEEDTQPLT EPIIKPVKTK BACU008416/1-972 DHPGMEVVLH EDKKYYPTAE EVYGPEVETI VQEEDTQPLT EPIIKPVKTK 101 150 ENSTTRP00000005889/1-972 KFTLMEQTLP VTVYEMDFLA DLMDNSELIR NVTLCGHLHH GKTCFVDCLI bmy_11377T0/1-793 ---------- ---------- ---------R PLSLC----- ---------- ENSP00000392094/1-972 KFTLMEQTLP VTVYEMDFLA DLMDNSELIR NVTLCGHLHH GKTCFVDCLI ENSBTAP00000017986/1-972 KFTLMEQTLP VTVYEMDFLA DLMDNSELIR NVTLCGHLHH GKTCFVDCLI BACU008416/1-972 KFTLMEQTLP VTVYEMDFLA DLMDNSELIR NVTLCGHLHH GKTCFVDCLI 151 200 ENSTTRP00000005889/1-972 EQTHPEIRKR YDQDLCYTDI LFTEQERGVG IKSTPVTVVL PDTKGKSYLF bmy_11377T0/1-793 ---------- ---------- ---DFQRGVG IKSTPVTVVL PDTKGKSYLF ENSP00000392094/1-972 EQTHPEIRKR YDQDLCYTDI LFTEQERGVG IKSTPVTVVL PDTKGKSYLF ENSBTAP00000017986/1-972 EQTHPEIRKR YDQDLCYTDI LFTEQERGVG IKSTPVTVVL PDTKGKSYLF BACU008416/1-972 EQTHPEIRKR YDQDLCYTDI LFTEQERGVG IKSTPVTVVL PDTKGKSYLF 201 250 ENSTTRP00000005889/1-972 NIMDTPGHVN FSDEVTAGLR ISDGVVLFID AAEGVMLNTE RLIKHAVQER bmy_11377T0/1-793 NIMDTPGHVN FSDEVTAGLR ISDGVVLFID AAEGVMLNTE RLIKHAVQER ENSP00000392094/1-972 NIMDTPGHVN FSDEVTAGLR ISDGVVLFID AAEGVMLNTE RLIKHAVQER ENSBTAP00000017986/1-972 NIMDTPGHVN FSDEVTAGLR ISDGVVLFID AAEGVMLNTE RLIKHAVQER BACU008416/1-972 NIMDTPGHVN FSDEVTAGLR ISDGVVLFID AAEGVMLNTE RLIKHAVQER 251 300 ENSTTRP00000005889/1-972 LAVTVCINKI DRLILELKLP PTDAYYKLRH IVDEVNGLIS MYSTDENLIL bmy_11377T0/1-793 LAVTVCINKI DRLILELKLP PTDAYYKLRH IVDEVNGLIS MYSTDENLIL ENSP00000392094/1-972 LAVTVCINKI DRLILELKLP PTDAYYKLRH IVDEVNGLIS MYSTDENLIL ENSBTAP00000017986/1-972 LAVTVCINKI DRLILELKLP PTDAYYKLRH IVDEVNGLIS MYSTDENLIL BACU008416/1-972 LAVTVCINKI DRLILELKLP PTDAYYKLRH IVDEVNGLIS MYSTDENLIL 301 350 ENSTTRP00000005889/1-972 SPLLGNVCFS SSQYSICFTL GSFAKIYADT FGDINYQEFA KRLWGDIYFN bmy_11377T0/1-793 SPLLGNVCFS SSQYSICFTL GSFAKIYADT FGDINYQEFA KRLWGDIYFN ENSP00000392094/1-972 SPLLGNVCFS SSQYSICFTL GSFAKIYADT FGDINYQEFA KRLWGDIYFN ENSBTAP00000017986/1-972 SPLLGNVCFS SSQYSICFTL GSFAKIYADT FGDINYQEFA KRLWGDIYFN BACU008416/1-972 SPLLGNVCFS SSQYSICFTL GSFAKIYADT FGDINYQEFA KRLWGDIYFN 351 400 ENSTTRP00000005889/1-972 PKTRKFTKKA PTSSSQRSFV EFILEPLYKI LAQVVGDVDT SLPRTLDELG bmy_11377T0/1-793 PKTRKFTKKA PTSSSQRSFV EFILEPLYKI LAQVVGDVDT SLPRTLDELG ENSP00000392094/1-972 PKTRKFTKKA PTSSSQRSFV EFILEPLYKI LAQVVGDVDT SLPRTLDELG ENSBTAP00000017986/1-972 PKTRKFTKKA PTSSSQRSFV EFILEPLYKI LAQVVGDVDT SLPRTLDELG BACU008416/1-972 PKTRKFTKKA PTSSSQRSFV EFILEPLYKI LAQVVGDVDT SLPRTLDELG 401 450 ENSTTRP00000005889/1-972 IHLTKEELKL NIRPLLRLVC KKFFGEFTGF VDMCVQHIPS PKVGAKPKIE bmy_11377T0/1-793 IHLTKEELKL NIRPLLRLVC KKFFGEFTGF VDMCVQHIPS PKVGAKPKIE ENSP00000392094/1-972 IHLTKEELKL NIRPLLRLVC KKFFGEFTGF VDMCVQHIPS PKVGAKPKIE ENSBTAP00000017986/1-972 IHLTKEELKL NIRPLLRLVC KKFFGEFTGF VDMCVQHIPS PKVGAKPKIE BACU008416/1-972 IHLTKEELKL NIRPLLRLVC KKFFGEFTGF VDMCVQHIPS PKAGAKPKIE 451 500 ENSTTRP00000005889/1-972 HTYTGGVDSD LGEAMSDCDP DGPLMCHTTK MYSTDDGVQF HAFGRVLSGT bmy_11377T0/1-793 HTYTGGVDSD LGEAMSDCDP DGPLMCHTTK MYSTDDGVQF HAFGRVLSGT ENSP00000392094/1-972 HTYTGGVDSD LGEAMSDCDP DGPLMCHTTK MYSTDDGVQF HAFGRVLSGT ENSBTAP00000017986/1-972 HTYTGGVDSD LGEAMSDCDP DGPLMCHTTK MYSTDDGVQF HAFGRVLSGT BACU008416/1-972 HTYTGGVDSD LGEAMSDCDP DGPLMCHTTK MYSTDDGVQF HAFGRVLSGT 501 550 ENSTTRP00000005889/1-972 IHAGQPVKVL GENYTLEDEE DSQICTVGRL WISVARYHIE VNRVPAGNWV bmy_11377T0/1-793 IHAGQPVKVL GENYTLEDEE DSQICTVGRL WISVAR---- ---------- ENSP00000392094/1-972 IHAGQPVKVL GENYTLEDEE DSQICTVGRL WISVARYHIE VNRVPAGNWV ENSBTAP00000017986/1-972 IHAGQPVKVL GENYTLEDEE DSQICTVGRL WISVARYHIE VNRVPAGNWV BACU008416/1-972 IHAGQPVKVL GENYTLEDEE DSQICTVGRL WISVARYHIE VNRVPAGNWV 551 600 ENSTTRP00000005889/1-972 LIEGVDQPIV KTATITEPRG NEEAQIFRPL KFNTTSVIKI AVEPVNPSEL bmy_11377T0/1-793 ---------- -PGVLTALHF GSQAQIFRPL KFNTTSVIKI AVEPVNPSEL ENSP00000392094/1-972 LIEGVDQPIV KTATITEPRG NEEAQIFRPL KFNTTSVIKI AVEPVNPSEL ENSBTAP00000017986/1-972 LIEGVDQPIV KTATITEPRG NEEAQIFRPL KFNTTSVIKI AVEPVNPSEL BACU008416/1-972 LIEGVDQPIV KTATITEPRG NEEAQIFRPL KFNTTSVIKI AVEPVNPSEL 601 650 ENSTTRP00000005889/1-972 PKMLDGLRKV NKSYPSLTTK VEESGEHVIL GTGELYLDCV MHDLRKMYSE bmy_11377T0/1-793 PKMLDGLRKV NKSYPSLTTK VEESGEHVIL GTGELYLDCV MHDLRKMYSE ENSP00000392094/1-972 PKMLDGLRKV NKSYPSLTTK VEESGEHVIL GTGELYLDCV MHDLRKMYSE ENSBTAP00000017986/1-972 PKMLDGLRKV NKSYPSLTTK VEESGEHVIL GTGELYLDCV MHDLRKMYSE BACU008416/1-972 PKMLDGLRKV NKSYPSLTTK VEESGEHVIL GTGELYLDCV MHDLRKMYSE 651 700 ENSTTRP00000005889/1-972 IDIKVADPVV TFCETVVETS SLKCFAETPN KKNKITMIAE PLEKGLAEDI bmy_11377T0/1-793 IDIKVADPVV TFCETVVETS SLKCFAETPN KKNKITMIAE PLEKGLAEDI ENSP00000392094/1-972 IDIKVADPVV TFCETVVETS SLKCFAETPN KKNKITMIAE PLEKGLAEDI ENSBTAP00000017986/1-972 IDIKVADPVV TFCETVVETS SLKCFAETPN KKNKITMIAE PLEKGLAEDI BACU008416/1-972 IDIKVADPVV TFCETVVETS SLKCFAETPN KKNKITMIAE PLEKGLAEDI 701 750 ENSTTRP00000005889/1-972 ENEVVQITWN RKKLGEFFQT KYDWDLLAAR SIWAFGPDAT GPNILVDDTL bmy_11377T0/1-793 ENEVVQITWN RKKLGEFFQT KYDWDLLAAR SIWAFGPDAT GPNILVDDTL ENSP00000392094/1-972 ENEVVQITWN RKKLGEFFQT KYDWDLLAAR SIWAFGPDAT GPNILVDDTL ENSBTAP00000017986/1-972 ENEVVQITWN RKKLGEFFQT KYDWDLLAAR SIWAFGPDAT GPNILVDDTL BACU008416/1-972 ENEVVQITWN RKKLGEFFQT KYDWDLLAAR SIWAFGPDAT GPNILVDDTL 751 800 ENSTTRP00000005889/1-972 PSEVDKALLG SVKDSIVQGF QWGTREGPLC DELIRNVKFK ILDAVVAQEP bmy_11377T0/1-793 PSEVDKALLG SVKDSIVQGF QWGTREGPLC DELIRNVKFK ILDAVVAQEP ENSP00000392094/1-972 PSEVDKALLG SVKDSIVQGF QWGTREGPLC DELIRNVKFK ILDAVVAQEP ENSBTAP00000017986/1-972 PSEVDKALLG SVKDSIVQGF QWGTREGPLC DELIRNVKFK ILDAVVAQEP BACU008416/1-972 PSEVDKALLG SVKDSIVQGF QWGTREGPLC DELIRNVKFK ILDAVVAQEP 801 850 ENSTTRP00000005889/1-972 LHRGGGQIIP TARRVVYSAF LMXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_11377T0/1-793 LHRGGGQIIP TARRVVYSAF LMATPRLMEP YYFVEVQAPA DCVSAVYTVL ENSP00000392094/1-972 LHRGGGQIIP TARRVVYSAF LMATPRLMEP YYFVEVQAPA DCVSAVYTVL ENSBTAP00000017986/1-972 LHRGGGQIIP TARRVVYSAF LMATPRLMEP YYFVEVQAPA DCVSAVYTVL BACU008416/1-972 LHRGGGQIIP TARRVVYSAF LMATPRLMEP YYFVEVQAPA DCVSAVYTVL 851 900 ENSTTRP00000005889/1-972 XXXXGHVTQD APIPGSPLYT IKAFIPAIDS FGFETDLRTH TQGQAFSLSV bmy_11377T0/1-793 ARRRGHVTQD APIPGSPLYT IKAFIPAIDS FGFETDLRTH TQGQAFSLSV ENSP00000392094/1-972 ARRRGHVTQD APIPGSPLYT IKAFIPAIDS FGFETDLRTH TQGQAFSLSV ENSBTAP00000017986/1-972 ARRRGHVTQD APIPGSPLYT IKAFIPAIDS FGFETDLRTH TQGQAFSLSV BACU008416/1-972 ARRRGHVTQD APIPGSPLYT IKAFIPAIDS FGFETDLRTH TQGQAFSLSV 901 950 ENSTTRP00000005889/1-972 FHHWQIVPGD PLDKSIVIRP LEPQPAPHLA REFMIKTRRR KGLSEDVSIS bmy_11377T0/1-793 FHHWQIVPGD PLDKSIVIRP LEPQPAPHLA REFMIKTRRR KGLSEDVSIS ENSP00000392094/1-972 FHHWQIVPGD PLDKSIVIRP LEPQPAPHLA REFMIKTRRR KGLSEDVSIS ENSBTAP00000017986/1-972 FHHWQIVPGD PLDKSIVIRP LEPQPAPHLA REFMIKTRRR KGLSEDVSIS BACU008416/1-972 FHHWQIVPGD PLDKSIVIRP LEPQPAPHLA REFMIKTRRR KGLSEDVSIS 951 1000 ENSTTRP00000005889/1-972 KFFDDPMLLE LAKQDVVLNY PM bmy_11377T0/1-793 KFFDDPMLLE LAKQDVVLNY PM ENSP00000392094/1-972 KFFDDPMLLE LAKQDVVLNY PM ENSBTAP00000017986/1-972 KFFDDPMLLE LAKQDVVLNY PM BACU008416/1-972 KFFDDPMLLE LAKQDVVLNY PM