KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 17:03:26 2014 Check: 00 .. Name: ENSP00000435460/1-359 Len: 396 Check: 3400 Weight: 1.00 Name: ENSTTRP00000011736/1-358 Len: 396 Check: 9198 Weight: 1.00 Name: bmy_10462T0/1-298 Len: 396 Check: 875 Weight: 1.00 Name: ENSBTAP00000018010/1-357 Len: 396 Check: 1032 Weight: 1.00 // 1 50 ENSP00000435460/1-359 MMLSLNNLQN IIYNPVIPFV GTIPDQLDPG TLIVIRGHVP SDADRFQVDL ENSTTRP00000011736/1-358 MMLSLNSLQN VVCNPIIPYV GTISEQLEPG TLIVLRGHVP SDSDRFQVDL bmy_10462T0/1-298 ---------- ---------- ---------- ---------- -----FQVDL ENSBTAP00000018010/1-357 -MMSLNNLQN VIYNPVIPYV GTISEQLEPG TLIVLRGHVP SDSDRFQVDL 51 100 ENSP00000435460/1-359 QNGSSMKPRA DVAFHFNPRF KRAGCIVCNT LINEKWGREE ITYDTPFKRE ENSTTRP00000011736/1-358 QCGSSVKPRA DVAFHFNPRF RRANCIVCNT LKNEKWGWEE ITYDMPFNKE bmy_10462T0/1-298 QCGSSVKPRA DVAFHFNPRF RRANCIVCNT LKNEKWGWEE ITYDMPFKKE ENSBTAP00000018010/1-357 QCGSSVKPRA DVAFHFNPRF KRANCVVCNT LRNEKWGWEE ITYDMPFKKE 101 150 ENSP00000435460/1-359 KSFEIVIMVL KDKFQ----- ---------- ---------- ---------- ENSTTRP00000011736/1-358 KSFEIVIMVL KDKFQ----- ---------- ---------- ---------- bmy_10462T0/1-298 KSFEIVIMVL KDKFQAVLPL LPRVCVVREA PPPPGPRACG GLDGSGGDSQ ENSBTAP00000018010/1-357 KSFEIVIMVL KEKFQ----- ---------- ---------- ---------- 151 200 ENSP00000435460/1-359 --VAVNGKHT LLYGHRIGPE KIDTLGIYGK VNIHSIGFSF SSDLQSTQAS ENSTTRP00000011736/1-358 --VAVNGKHT LIYAHRISLE KIDTLGIYGK VIIHSVGFSF SSXXXXXXXX bmy_10462T0/1-298 PEVAVNGKHT LIYAHRISLE KIDTLGIYGK VIIHSVGFSF SSDLRSSQAS ENSBTAP00000018010/1-357 --VAVNGRHT LLYAHRISPE RIDTLGIYGK VIIHSVGFSF SSDLGSTQGS 201 250 ENSP00000435460/1-359 SLELTEISRE NVPKSGTPQL PSNRGGDISK IAPRTVYTKS KDSTVNHTLT ENSTTRP00000011736/1-358 XXXXXXXXXX XVQKSGMSQF PSNR-GDISK IIPRTVYTKS KGSPANHTLT bmy_10462T0/1-298 TLEWTEISEE NVQKSGVSQF PSNR-GDISK IVPRTVYTKS KGSPANHTLT ENSBTAP00000018010/1-357 TLEPTGISKE NVQKSGESQL PSNR-GDISK IVPRTVYTKS KASPANHTLT 251 300 ENSP00000435460/1-359 CTKIPPMNYV SKRLPFAARL NTPMGPGRTV VVKGEVNANA KSFNVDLLAG ENSTTRP00000011736/1-358 CSKILPTDCL SKTLPFVARL NSSMGPGRTV VIKGEVNTNA KGFAVDLLSG bmy_10462T0/1-298 CAKILPTDCL SKTLPFVARL NSSMGPGRTV VIKGEVNTNA KG-------- ENSBTAP00000018010/1-357 CAKILPTNCL SKTLPFVARL NSSMGPGRTI VIKGEVNTNA KGFTVDLLSG 301 350 ENSP00000435460/1-359 KSKDIALHLN PRLNIKAFVR NSFLQESWGE EERNITSFPF SPGMYFEMII ENSTTRP00000011736/1-358 KSRDIALHLN PRLNVKAFVR NSFLQESWGE EERNITCFPF SPGMYFEMII bmy_10462T0/1-298 ---------- ---------- ---------- ---------- ----SVSMII ENSBTAP00000018010/1-357 KSKDIALHLN PRLNVKAFVR NSFLQEAWGE EERNITCFPF SPGMYFEMII 351 400 ENSP00000435460/1-359 YCDVREFKVA VNGVHSLEYK HRFKELSSID TLEINGDIHL LEVRSW ENSTTRP00000011736/1-358 YCDVREFKVA VNGVHCLEYR HRYKDLSHID TLEIDGDIHL LEVRSW bmy_10462T0/1-298 YCDVREFKVA VNGVHSLEYR HRFKDLSHID TLEIDGDIHL LEVRSW ENSBTAP00000018010/1-357 YCDAREFKVA VNGVHSLEYK HRFKELSKVD TLEIDGDIHL LEVRSW