KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:03:28 2014 Check: 00 .. Name: bmy_21884T0/1-768 Len: 792 Check: 2272 Weight: 1.00 Name: ENSP00000159060/1-568 Len: 792 Check: 9076 Weight: 1.00 Name: ENSBTAP00000018021/1-566 Len: 792 Check: 9660 Weight: 1.00 Name: BACU019155/1-568 Len: 792 Check: 4294 Weight: 1.00 Name: ENSTTRP00000005991/1-568 Len: 792 Check: 3551 Weight: 1.00 // 1 50 bmy_21884T0/1-768 ---------- ------LSWL GVNLYLFIDT FCWYEEEESF LYTRVILGVS ENSP00000159060/1-568 MMGCWILNEG LSTILVLSWL GINFYLFIDT FYWYEEEESF HYTRVILG-- ENSBTAP00000018021/1-566 MMGCWILNES LSIILVLSWL GVNLYLFINT FYWYEEEESF LYTRVILG-- BACU019155/1-568 MMGCWILNES LSIILVLSWL GVNLYLFIDT FCWYEEEESF LYTRVILG-- ENSTTRP00000005991/1-568 MMGCWILNES LSIILVLSWL GVNLYLFIDT FCWYEEEESF LYTRVILG-- 51 100 bmy_21884T0/1-768 RFGDYTLIII SEKKMHSIFP SSLVFTVSLS CVFMYGQSTL AWARASAVCL ENSP00000159060/1-568 ---------- ---------- ---------- -------STL AWARASALCL ENSBTAP00000018021/1-566 ---------- ---------- ---------- -------STL AWARASAVCL BACU019155/1-568 ---------- ---------- ---------- -------STL AWARASAVCL ENSTTRP00000005991/1-568 ---------- ---------- ---------- -------STL AWARASAVCL 101 150 bmy_21884T0/1-768 NFNCMLILLP ISRNLLSLMR GTSSCFRGPW RRQLDKNLKF HKLVAYGIAM ENSP00000159060/1-568 NFNCMLILIP VSRNLISFIR GTSICCRGPW RRQLDKNLRF HKLVAYGIAV ENSBTAP00000018021/1-566 NFNCMLILLP VSRNLISFMR GTSACFRGPW RRQLDKNLKF HKLVAYGIVI BACU019155/1-568 NFNCMLILLP ISRNLLSLMR GTSSCFRGPW RRQLDKNLKF HKLVAYGIAM ENSTTRP00000005991/1-568 NFNCMLILLP ISRNLLSLMR GTSSCFRGPW RRQLDKNLKF HKLVAYGIAM 151 200 bmy_21884T0/1-768 NATIHILAHL CNLEHYHWSQ SPEAEGLVAA LSKLGDTPDE TYLNPIRTFH ENSP00000159060/1-568 NATIHIVAHF FNLERYHWSQ SEEAQGLLAA LSKLGNTPNE SYLNPVRTFP ENSBTAP00000018021/1-566 NATIHVGAHL FNLEHYYWSQ SPEAEGLVAA LSKLGDTPNE TYLNPIRTFH BACU019155/1-568 NATIHILAHL CNLEHYHWSQ SPEAEGLAAA LSKLGDTPDE TYLNPIRTFH ENSTTRP00000005991/1-568 NATIHILAHL CNLEYYHWSQ SPEAEGLVAA LSKLGNAPDE TYLNPIRTFH 201 250 bmy_21884T0/1-768 TNTITELLXT VAGITGLVIS LALILIMTSS TEFIRQASYE LFWYTHHVFI ENSP00000159060/1-568 TNTTTELLRT IAGVTGLVIS LALVLIMTSS TEFIRQASYE LFWYTHHVFI ENSBTAP00000018021/1-566 TNTITELLTT IAGITGLLIS LALILIMTSS TEFIRQVSYE LFWYTHHVFI BACU019155/1-568 TNTITELLTT VAGITGLLIS LALILIMTSS TEFIRQASYE LFWYTHHVFI ENSTTRP00000005991/1-568 TNTITELLRT VAGITGLLIS LALILIMTSS TEFIRQASYE LFWYTHHVFI 251 300 bmy_21884T0/1-768 IFFIGLAIHG AGRIVRGQTA ESLLLHNVTF CRDHLAEWQT AARCPVPQFS ENSP00000159060/1-568 VFFLSLAIHG TGRIVRGQTQ DSLSLHNITF CRDRYAEWQT VAQCPVPQFS ENSBTAP00000018021/1-566 IFFIGLAIHG AGRIVRGQTP ESLLLHNITL CRDHPEEWQ- -VRCPVPQFS BACU019155/1-568 IFFIGLAIHG AGRIVRGQTA ESLLLHNVTF CRDHLAEWQT AARCPVPQFS ENSTTRP00000005991/1-568 IFFIGLAIHG AGRIVRGQTA ESLLLHNVTF CREHLAEWQT AAQCPVPQFS 301 350 bmy_21884T0/1-768 GKEPSAWKWV LGPVVLYACE RIIRFWRFQQ EVVITKVVSH PSGVLELHMK ENSP00000159060/1-568 GKEPSAWKWI LGPVVLYACE RIIRFWRFQQ EVVITKVVSH PSGVLELHMK ENSBTAP00000018021/1-566 GKEPSAWKWV LGPMVLYACE RIIRFWRFQQ EVIITKVVSH PSGVLELCMK BACU019155/1-568 GKEPSAWKWV LGPVVLYACE RIIRFWRFQQ EVVITKVVSH PSGVLELHMK ENSTTRP00000005991/1-568 GKEPSAWKWV LGPVVLYACE RILRFWRFQQ EVVITKVVSH PSGVLELHMK 351 400 bmy_21884T0/1-768 KRDFKMAPGQ YXLIQCPSIS SLEWHPFTLT SAPQEDFFSV HIRAAGDWTE ENSP00000159060/1-568 KRGFKMAPGQ YILVQCPAIS SLEWHPFTLT SAPQEDFFSV HIRAAGDWTA ENSBTAP00000018021/1-566 KRDFKMAPGQ YVLIQCPSIS TLEWHPFTLT SAPQEDFFSV HIRAAGDWTE BACU019155/1-568 KRDFKMVPGQ YVLIQCPSIS SLEWHPFTLT SAPQEDFFSV HIRAAGDWTE ENSTTRP00000005991/1-568 KRGFKMAPGQ YVLIQCPSIS SLEWHPFTLT SAPQEDFFSV HIRAAGDWTE 401 450 bmy_21884T0/1-768 ALCKAFGAEG QALKEPWSLP RLAVDGPFGA ALTDVFHYPV SMCIATGIGV ENSP00000159060/1-568 ALLEAFGAEG QALQEPWSLP RLAVDGPFGT ALTDVFHYPV CVCVAAGIGV ENSBTAP00000018021/1-566 ALCKAFGVEG QPLKEPWSLP RLAVDGPFGA ALTDVFHYRV SMCIAAGIGV BACU019155/1-568 ALCKAFGAEG PALKEPWSLP RLAVDGPFGA ALTDVFHYPV SMCIATGIGV ENSTTRP00000005991/1-568 ALCKAFGADG QALKEPWSLP RLAVDGPFGA ALTDVFHYPV SMCIATGIGV 451 500 bmy_21884T0/1-768 TPFAALLKSI WYQCCESQTQ WKLSKMTRHK FYCFIAITGH VIAHVSKIWT ENSP00000159060/1-568 TPFAALLKSI WYKCSEAQTP LKLSKV---- YFYWICRDAR AFE------- ENSBTAP00000018021/1-566 TPFAALLKSI WYQCCEAQTQ CKLNKV---- YFYWICRDPG AFE------- BACU019155/1-568 TPFAALLKSI WYQCCESQTQ WKLSKV---- YFYWICRDPG AFE------- ENSTTRP00000005991/1-568 TPFAALLKSI WYQCCESQTQ WKLSKV---- YFYWICRDPG AFE------- 501 550 bmy_21884T0/1-768 GCKWLCDWAA ENSSKNPQNL KVHIGTHRIL IP--PSLSPF HCYS-W---- ENSP00000159060/1-568 ---WFADLLL SLETRMSEQG KTHFLSYHIF LTGWDENQAL HIALHWDENT ENSBTAP00000018021/1-566 ---WFADLLL ALETKMSEQG KAHFLSYHIF LTGWDENQAF HIALHWDENA BACU019155/1-568 ---WFADLLL SLETRMSEQG KTHFLSYHIF LTGWDENQAF HIALHWDENT ENSTTRP00000005991/1-568 ---WFADLLL SLETRMSEQG KTHFLSYHIF LTGWDENQAF HIALHWDENT 551 600 bmy_21884T0/1-768 -AVYGFSQSC FNGRAKELPQ NAGEQSSTFL SNSIFTIIDL GYSFQSVLFC ENSP00000159060/1-568 DVITGLKQKT FYGRP----- ---------- --------NW NNEFKQIAYN ENSBTAP00000018021/1-566 DVITGLRQKT YYGRP----- ---------- --------NW NHEFQQVAFS BACU019155/1-568 DVITGLRQKT FYGRP----- ---------- --------NW NHEFRQVAYS ENSTTRP00000005991/1-568 DVITGLRQKT FYGRP----- ---------- --------NW NHEFRQVAYS 601 650 bmy_21884T0/1-768 HKERGKDSIR GCGDGEGGRE RKNYIFMINT EVSRPVLEIL VSPPVSNHHL ENSP00000159060/1-568 HPSSSIG--- ---------- ----VFFCGP KALSRTLQKM C-------HL ENSBTAP00000018021/1-566 HPSSNIG--- ---------- ----VFFCGP KALSKILQKM C-------RV BACU019155/1-568 HPSSNIG--- ---------- ----VFFCGP KALSKIIQRM C-------RL ENSTTRP00000005991/1-568 HPSSNIG--- ---------- ----VFFCGP KALSKIIQRM C-------RL 651 700 bmy_21884T0/1-768 YNSGVMVDTD PQEIDFGSKE MQVVFEDVSS AVFVGTYPGH GTGTSDGRVW ENSP00000159060/1-568 YSS-----AD PRGVHF---- ---------- ---------- ---------- ENSBTAP00000018021/1-566 YSS-----AD PRGVHF---- ---------- ---------- ---------- BACU019155/1-568 YSS-----AD PRGVHF---- ---------- ---------- ---------- ENSTTRP00000005991/1-568 YSS-----AD PRGIHF---- ---------- ---------- ---------- 701 750 bmy_21884T0/1-768 RSAWGDFLLG SDDLVHTLLK RSPGCGKVRF LLFLPEALHR SPFSAPPLPL ENSP00000159060/1-568 ---------- ---------- ---------- ------YYNK ESF------- ENSBTAP00000018021/1-566 ---------- ---------- ---------- ------YYNR ESF------- BACU019155/1-568 ---------- ---------- ---------- ------HYNR ESF------- ENSTTRP00000005991/1-568 ---------- ---------- ---------- ------HYNR ESF------- 751 800 bmy_21884T0/1-768 APKLPSVTCK SVTEGKTHKA ITRKQNMNVF LACFLKSENN RK ENSP00000159060/1-568 ---------- ---------- ---------- ---------- -- ENSBTAP00000018021/1-566 ---------- ---------- ---------- ---------- -- BACU019155/1-568 ---------- ---------- ---------- ---------- -- ENSTTRP00000005991/1-568 ---------- ---------- ---------- ---------- --