KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:03:33 2014 Check: 00 .. Name: ENSTTRP00000007384/1-388 Len: 469 Check: 3118 Weight: 1.00 Name: BACU002715/1-259 Len: 469 Check: 8049 Weight: 1.00 Name: bmy_20993T0/1-304 Len: 469 Check: 5194 Weight: 1.00 Name: ENSP00000437082/1-390 Len: 469 Check: 980 Weight: 1.00 Name: ENSBTAP00000018054/1-393 Len: 469 Check: 3288 Weight: 1.00 // 1 50 ENSTTRP00000007384/1-388 --MGEITMDQ KPRWV-VLVV LLLQEGSAYK LVCYFTNWSR DRQEPGKFTL BACU002715/1-259 ---------- ---------- ---------- ---------- ----MGLF-- bmy_20993T0/1-304 MEKGDLGARK QYEAANQNPP KCPSVGSAYK LVCYFTNWSR DRQEPGKFTL ENSP00000437082/1-390 --MGATTMDQ KSLWAGVVVL LLLQGGSAYK LVCYFTNWSQ DRQEPGKFTP ENSBTAP00000018054/1-393 --MGVIAMDQ KSFWEGLVVL LLLQEGCAYK LVCYFTNWSQ DRQEPGKFTL 51 100 ENSTTRP00000007384/1-388 ESTDPFLCSH LIYSFVSIGN NKVIIKDKND VMLSQTISRL KTKNPKLKIL BACU002715/1-259 --LSPYACP- ---------- ---------- ---------- ---------- bmy_20993T0/1-304 ESTDPFLCSH LIYSFASISN NKVIIKDKND AMLSQTISSL KTKNPKLKIL ENSP00000437082/1-390 ENIDPFLCSH LIYSFASIEN NKVIIKDKSE VMLYQTINSL KTKNPKLKIL ENSBTAP00000018054/1-393 ENTDPFLCSH LIYSFASISN NKVIIKDKNE AKLYQTINSL KTKNPKLKIL 101 150 ENSTTRP00000007384/1-388 LSVGRYLFGS KGFHRMVDSS TLRLEFINSV ILFLRNHNFD GLDI-WIYPD BACU002715/1-259 VQKGAVLNNL DHGHPVVEAK ---------- ---------- ---------- bmy_20993T0/1-304 LSVGGYLFGS KGFHRMVDSS TLRLEFINS- ---------- ---------- ENSP00000437082/1-390 LSIGGYLFGS KGFHPMVDSS TSRLEFINSI ILFLRNHNFD GLDVSWIYPD ENSBTAP00000018054/1-393 LSIGGYLFGS KGFHPVVESS SSTLKFVNSV ILFLRNHNFD GLDISWIYPN 151 200 ENSTTRP00000007384/1-388 LKDNTCFTVL IHELAEAFQ- DFVKSTKERL LLTAGVSAGR HMIDNSYQIK BACU002715/1-259 ---------- --EMMKGFER Q--------- ---------- ---------- bmy_20993T0/1-304 ---------- --ELAEAFQQ DFVKSTKERF LLTAGVSAGR HMIDNSYQIK ENSP00000437082/1-390 QKENTHFTVL IHELAEAFQK DFTKSTKERL LLTAGVSAGR QMIDNSYQVE ENSBTAP00000018054/1-393 VKDNTHFTVL IHKLAEAFQQ DFVKSTKERL LLTAGVSAGR QMIDNSYQIK 201 250 ENSTTRP00000007384/1-388 ELVX---XXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX BACU002715/1-259 ---------- ---------- ---------- ---------- ---------- bmy_20993T0/1-304 EL-------- ---------- ---------- ---------- ---------- ENSP00000437082/1-390 KLAK---DLD FINLLSFDFH GSWEKPLITG HNSPLSKGWQ DRGPSSYYNV ENSBTAP00000018054/1-393 ELAKQSRDLD FINLLSFDFH GSWEKPLVTG HNSPLRKGQL DRGTSSYYNV 251 300 ENSTTRP00000007384/1-388 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX BACU002715/1-259 EYAVGYWINK GMPVEKVVMG IPMYGRSSTL ASAENTLGDP ASGPGAAGPI bmy_20993T0/1-304 EYAVGYWINK GMPVEKVVMG IPMYGCSSTL ASAENTLGAP ASGPGATGPI ENSP00000437082/1-390 EYAVGYWIHK GMPSEKVVMG IPTYGHSFTL ASAETTVGAP ASGPGAAGPI ENSBTAP00000018054/1-393 EYAVGYWINK GMPAEKVVMG IPTYGRSFTL ASAETAVGAP ASGPGAAGPI 301 350 ENSTTRP00000007384/1-388 XXXXXXXXXX X--------- ---------- ---------- ---------- BACU002715/1-259 TKFSGFLAYH EIPRPTLCLQ LPPSLGLSTK NSQRFTLDHP FCMLYLVISL bmy_20993T0/1-304 TKFSGFLAYY E--------- ---------- ---------- ---------- ENSP00000437082/1-390 TESSGFLAYY E--------- ---------- ---------- ---------- ENSBTAP00000018054/1-393 TKSSGFLAYY E--------- ---------- ---------- ---------- 351 400 ENSTTRP00000007384/1-388 ---------- ---------- ---------- ---ICHFLKG VKITRLQDHQ BACU002715/1-259 IDPRSEDSVV PKTLVSYLPL LFLNFKKNPL LTLICQFLKG AKITRLQDHQ bmy_20993T0/1-304 ---------- ---------- ---------- ---ICQSLKG AKITRLQDHQ ENSP00000437082/1-390 ---------- ---------- ---------- ---ICQFLKG AKITRLQDQQ ENSBTAP00000018054/1-393 ---------- ---------- ---------- ---ICQFLQG AKITRLQDQQ 401 450 ENSTTRP00000007384/1-388 VPYAVKGNQW VSYEDVESVE TKVQFLKNLN LGGAMIWSID MDDFTSKSCS BACU002715/1-259 VPYAVEGNQW VSYDDVESME TKVQFLKNLN LGGAMIWSID MDDFTSKSCS bmy_20993T0/1-304 VPYAVKGNQW ---------- --VQFLKNLN LGGAMIWSID MDDFTSKSCS ENSP00000437082/1-390 VPYAVKGNQW VGYDDVKSME TKVQFLKNLN LGGAMIWSID MDDFTGKSCN ENSBTAP00000018054/1-393 VPYAVKGNQW VGYDDVESVE TKVQFLKNLN LGGAMIWSID MDDFTGKLCS 451 500 ENSTTRP00000007384/1-388 QGSYPLFQAV KRSLGSLG- BACU002715/1-259 QGPYPLVQAV KRSLGSLGR bmy_20993T0/1-304 QGSYPLVQAV KRSLGSLGR ENSP00000437082/1-390 QGPYPLVQAV KRSLGSL-- ENSBTAP00000018054/1-393 QGPYPLVQAV KRSLGSL--