KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:03:40 2014 Check: 00 .. Name: ENSP00000427687/1-606 Len: 675 Check: 1597 Weight: 1.00 Name: ENSBTAP00000018092/1-606 Len: 675 Check: 318 Weight: 1.00 Name: ENSTTRP00000012053/1-607 Len: 675 Check: 23 Weight: 1.00 Name: bmy_14636T0/1-638 Len: 675 Check: 3049 Weight: 1.00 Name: BACU014355/1-229 Len: 675 Check: 5559 Weight: 1.00 // 1 50 ENSP00000427687/1-606 ---------- ------MPYE IKKVFASLPQ VERGVSKIIG ---------- ENSBTAP00000018092/1-606 ---------- ------MPYE IKKVFASLPQ VERGVSKIVG ---------- ENSTTRP00000012053/1-607 ---------- ------MPYE IKKVFASLPQ VERGVSKIIG ---------- bmy_14636T0/1-638 MLLVPDAGPV LAAESSQPW- ICATKGSFPN EGFGRGEAPG CLPPSVATPP BACU014355/1-229 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000427687/1-606 ---------- ---------- --GDPKGNNF L--------- --YTNGKCV- ENSBTAP00000018092/1-606 ---------- ---------- --GDPKGNSF L--------- --YTNGKCV- ENSTTRP00000012053/1-607 ---------- ---------- --GDPRGNNF L--------- --YTNGKCV- bmy_14636T0/1-638 GQRLWIGSDT AWKPVIELVL NRGDPLWGNW TQRMQQQPAA PQISNETCIS BACU014355/1-229 ---------- ---------- ---------- ---------- ---------- 101 150 ENSP00000427687/1-606 --------IL RNIDNPALAD IYTEHAHQVV VAKYAPSGFY IASGDVSGKL ENSBTAP00000018092/1-606 --------IL RNIDNPAIAD IYTEHAHQVV VAKYAPSGFY IASGDVSGKL ENSTTRP00000012053/1-607 --------IL RNIDXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXVSGKL bmy_14636T0/1-638 CMYFTNTYLL VLWQNPAIAD IYTEHAHQVV VAKYAPSGFY IASGDVSGKL BACU014355/1-229 ---------- ---------- ---------- ---------- ---------- 151 200 ENSP00000427687/1-606 RIWDTTQKEH LLKYEYQPFA GKIKDIAWTE DSKRIAVVGE GREKFGAVFL ENSBTAP00000018092/1-606 RIWDTTQKEH LLKYEYQPFA GKIKDIAWTE DSKRIAVVGE GREKFGAVFL ENSTTRP00000012053/1-607 RVWDTTQKEH LLKYEYQHFA GKIKDIAWTE DSKRIAVVGE GREKFGAVFL bmy_14636T0/1-638 RIWDTTQKEH LLKYEYQPFA GKIKDIAWTE DSKRIAVVGE GREKFGAVFL BACU014355/1-229 ---------- ---------- ---------- ---------- ---------- 201 250 ENSP00000427687/1-606 WDSGSSVGEI TGHNKVINSV DIKQSRPYRL ATGSDDNCAA FFEGPPFKFK ENSBTAP00000018092/1-606 WDSGSSVGEI TGHNKVINSV DIKQSRPYRL VTGSDDNCAA FFEGPPFKFK ENSTTRP00000012053/1-607 WDSGSSVGEI TGHNKVINSV DIKQSRPYRL VTGSDDNCAA FFEGPPFKFK bmy_14636T0/1-638 WDSGSSVGEI TGHNKVINSV DIKQSRPYRL VTGSDDNCAA FFEGPPFKFK BACU014355/1-229 ---------- ---------- ---------- ---------- ---------- 251 300 ENSP00000427687/1-606 FTIGDHSRFV NCVRFSPDGN RFATASADGQ IYIYDGKTGE KVCALGGSKA ENSBTAP00000018092/1-606 FTISDHGRFV NCVRFSPDGN RFATASADGQ IFIYDGKTGE KVCALGGSKA ENSTTRP00000012053/1-607 FTIGDHSRFV NCVRFSPDGN RFATAGADGQ IYIYDGKTGE KLCALGGSKA bmy_14636T0/1-638 FTIGDHSRFV NCVRFSPDGN RFATAGADGQ IYIYDGKTGE KVCALGGSKA BACU014355/1-229 ---------- ---------- ---------- ---------- ---------- 301 350 ENSP00000427687/1-606 HDGGIYAISW SPDSTHLLSA SGDKTSKIWD VSVNSVVSTF PMGSTVLDQQ ENSBTAP00000018092/1-606 HDGGIYAISW SPDSTRLLSA SGDKTSKIWD VNVNSVVNTF TMGSNVLDQQ ENSTTRP00000012053/1-607 HDGGIYAVSW SPDSTHLLSA SGDKTSKIWD VNVNSVVNTF TMGSNVLDQQ bmy_14636T0/1-638 HDGGIYAISW SPDSTQLLSA SGDKTSKIWD ISVNSVVNTF TMGSNVLDQQ BACU014355/1-229 ---------- ---------- ---------- ---------- ---------- 351 400 ENSP00000427687/1-606 LGCLWQKDHL LSVSLSGYIN YLDRNNPSKP LHVIKGHSKS IQCLTVHKNG ENSBTAP00000018092/1-606 LGCLWQKDHL LSISLSGYIN YLDKNNPSKP LRVIKGHSKS IQCLTVHKNG ENSTTRP00000012053/1-607 LGCLWQKDHL LSISLSGYIN YLDKNNPSKP LRVIKGHSKS IQCLTVHKNG bmy_14636T0/1-638 LGCLWQKDHL LSISLSGYIN YLDKNNPSKP LRVIK----- ---------- BACU014355/1-229 ---------- ---------- ---------- ---------- ---------- 401 450 ENSP00000427687/1-606 GKSYIYSGSH -DGHINYWDS ETGENDSFAG KGHTNQVSRM TVDESGQLIS ENSBTAP00000018092/1-606 GKSYIYSGSH -DGHINYWDS ETGENDSFAG KGHTNQVSRM TVDEHGQLVS ENSTTRP00000012053/1-607 GKPALDVSLF LNPAPHYWDS ETGENDSFAG KGHTNQVSRM TVDECGQLVS bmy_14636T0/1-638 ---------- ---------- -TGENDSFAG KGHTNQVSRM TVDECGQLVS BACU014355/1-229 ---------- ---------- ---------- ---------M TVDECGQLVS 451 500 ENSP00000427687/1-606 CSMDDTVRYT SLMLRDYSGQ GVVKLDVQPK CVAVGPGGYA VVVCIGQIVL ENSBTAP00000018092/1-606 CSMDDTVRYT NLTLRDYSGQ GVVKLDVQPK CLAVGPGGYT VVVCIGQIVL ENSTTRP00000012053/1-607 CSMDDTVRYT NLTLRDYSGQ GVVKLDIQPK CVAVGPGGYT VVVCIGQIVL bmy_14636T0/1-638 CSMDDTVRYT NLTLRDYSGQ GVVKLDIQPK CVAVGPGGYT VVVCIGQIVL BACU014355/1-229 CSMDDTVRYT NLTLRDYSGQ GVVKLDIQPK CVAVGPGGYT VVVCIG---- 501 550 ENSP00000427687/1-606 LKDQRKCFSI DNPGYEPEVV AVHPGGDTVA IGGVDGNVRL YSILGTTLKD ENSBTAP00000018092/1-606 LKDQRKCFSI DNPGYEPEVV AVHPGGETVA VGGADGNVRL YSILGTTLKD ENSTTRP00000012053/1-607 LKDQRKCFSI DSPGYEPEVV AVHPGGETVA IGGADGNVRL YSILGSTLKE bmy_14636T0/1-638 LKDQRKCFSI DSPGYEPEVV AVHPGGETVA IGGADGNVRL YSILGTTLKD BACU014355/1-229 ---QRKCFSI DSPGYEPEVV AVHPGGETVA IGGADGNVRL YSILGTTLKD 551 600 ENSP00000427687/1-606 EGKLLEAKGP VTDVAYSHDG AFLAVCDASK VVTVFSVADG YSENNVFYGH ENSBTAP00000018092/1-606 EGKLLEAKGP VTDLAFSHDG AFLAVCDASK VVTVFSVADG YSENNVFYGH ENSTTRP00000012053/1-607 EGKLLEAKGP VTDLAYSHDG AFLAVCDANK VVTVFSTADG YSENNVFYGH bmy_14636T0/1-638 EGKLLEAKGP VTDLAYSHDG AFLAVCDASK VVTVFSIADG YSENNVFYGH BACU014355/1-229 EGKLLEAKGP VTDLAYSHDG AFLAVCDASK VVTVFSIADG YSENNVFYGH 601 650 ENSP00000427687/1-606 HAKIVCLAWS PDNEHFASGG MDMMVYVWTL SDPETRVKIQ DAHRLHHVSS ENSBTAP00000018092/1-606 HAKIVCLAWS PDNEHFASGG MDMMVYVWTL SDPETRVKIQ DAHRLHHVSS ENSTTRP00000012053/1-607 HAKIVCLAWS PDNEHFASGG MDMMVYVWTL SDPETRVKIQ DAHRLHHVSS bmy_14636T0/1-638 HAKIVCLAWS PDNEHFASGG MDMMVYVWTL SDPETRVKIQ DAHRLHHVSS BACU014355/1-229 HAKIVCLAWS PDNEHFASGG MDMMVYVWTL SDPETRVKIQ DAHRLHHVSS 651 700 ENSP00000427687/1-606 LAWLDEHTLV TTSHDASVKE WTITY ENSBTAP00000018092/1-606 LAWLDEHTLV TTSHDASVKE WTIAY ENSTTRP00000012053/1-607 LAWLDEHTLV TTSHDASVKE WTIAY bmy_14636T0/1-638 LAWLDEHTLV TTSHDASVKE WTIAY BACU014355/1-229 LAWLDEHTLV TTSHDASVKE WTIAY