KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:03:42 2014 Check: 00 .. Name: BACU000495/1-383 Len: 763 Check: 9866 Weight: 1.00 Name: ENSP00000389630/1-723 Len: 763 Check: 4793 Weight: 1.00 Name: ENSBTAP00000018107/1-723 Len: 763 Check: 6791 Weight: 1.00 Name: bmy_10573T0/1-673 Len: 763 Check: 5227 Weight: 1.00 Name: ENSTTRP00000004006/1-723 Len: 763 Check: 5570 Weight: 1.00 // 1 50 BACU000495/1-383 ---------- ---------- ---------- ---------- ----GPTIEL ENSP00000389630/1-723 ---------- ---------- ---------- ---------M AEEEGPPVEL ENSBTAP00000018107/1-723 ---------- ---------- ---------- ---------I SREEGPTIEL bmy_10573T0/1-673 VGARRPAAGL GRPRGSATRR AGDSGPRGSR RGAPASAGTM AEEEGPTIEL ENSTTRP00000004006/1-723 ---------- ---------- ---------- ---------M AEEEGPTIEL 51 100 BACU000495/1-383 RQRKKPKSSE NKDSAKEEKI NNTAIPERVP KHILFQRFAK IFIGCLAAVT ENSP00000389630/1-723 RQRKKPKSSE NKESAKEEKI SDIPIPERAP KHVLFQRFAK IFIGCLAAVT ENSBTAP00000018107/1-723 RQRKKPKSSE NKESAKEEKI NDTPVPERAP KYILFQRFAK IFIGCLAAVT bmy_10573T0/1-673 RQRKKPKSSE NKESAKEEKI NNTAIPERVP KHILFQRFAK IFIGCLAAVT ENSTTRP00000004006/1-723 RQRKKPKSSE NKESAKEEKI NNTAIPERVP KHILFQRFAK IFIGCLAAVT 101 150 BACU000495/1-383 SGMMYALYLS AYHERKFWFS NRQELEREIT FQGDSAIYYS YYKDMLKAPS ENSP00000389630/1-723 SGMMYALYLS AYHERKFWFS NRQELEREIT FQGDSAIYYS YYKDMLKAPS ENSBTAP00000018107/1-723 SGMMYALYLS AYHERKFWFS NRQELEREIT FQGDSAIYYS YYKDMLKAPS bmy_10573T0/1-673 SGMMYALYLS AYHERKFWFS NRQELEREIT FQGDSAIYYS YYKDMLKAPS ENSTTRP00000004006/1-723 SGMMYALYLS AYHERKFWFS NRQELEREIT FQGDSAIYYS YYKDMLKAPS 151 200 BACU000495/1-383 FERGMDGVGK SKSSTGV--- ---------- --------QD CGRE------ ENSP00000389630/1-723 FERGVYELTH NNKTVSLKTI NAVQQMSLYP ELIASILYQA TGSNEIIEPV ENSBTAP00000018107/1-723 FERGVYELTH NNKTVSLKTI NAVQQMSLYP ELMASVLYQA TGSSEIIEPV bmy_10573T0/1-673 FERGVYELTH NNKTVSLKTI NAVQQMSLYP ELIASVLYQA TGSN------ ENSTTRP00000004006/1-723 FERGVYELTH NNKTVSLKTI NAVQQMSLYP ELIASVLYQA TGSNEIIEPV 201 250 BACU000495/1-383 ---------- ---------- ---------- ---------- ---------- ENSP00000389630/1-723 YFYIGIVFGL QGIYVTALFV TSWLMSGTWL AGMLTVAWFV INRVDTTRIE ENSBTAP00000018107/1-723 YFYIGIVFGL QGIYVTALFV TSWLMSGTWL AGMLTVAWFI INRVDTTRIE bmy_10573T0/1-673 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000004006/1-723 YFYIGIVFGL QGIYVTALFV TSWLMSGTWL AGMLTVAWFI INRVDTTRIE 251 300 BACU000495/1-383 ---------- ---------- ---------- ---------- ---------- ENSP00000389630/1-723 YSIPLRENWA LPYFACQIAA LTGYLKSNLN TYGERFCYLL MSASTYTFMM ENSBTAP00000018107/1-723 HSIPLRENWA LPYFACQVAA LTGYLKSNLN SYGERFCYLL MSASTYTFMM bmy_10573T0/1-673 ---------- ---------- ---------- ----RFCYLL MSASTYTFMM ENSTTRP00000004006/1-723 YSIPLRENWA LPYFACQVAA LTGYLKSNLN SYGERFCYLL MSASTYTFMM 301 350 BACU000495/1-383 ---------- ---------- ----EACSRV EN-------- ---------- ENSP00000389630/1-723 MWEYSHYLLF LQAISLFLLD TFSVEQSDKV YEVYKIYIFS LFLGYLLQFE ENSBTAP00000018107/1-723 VWEYSHYLLF LQAISLFLLD SFSLEQSDKV HEVYKIYIFS LFLGYLLQFE bmy_10573T0/1-673 MWEYSHYLLF LQAISLFLLD SFSLEQSDKV HEVYKIYIFS LFLGYLLQFE ENSTTRP00000004006/1-723 MWEYSHYLLF LQAISLFLLD SFSLEQSEKV HEVYKIYIFS LFLGYLLQFE 351 400 BACU000495/1-383 ---------- ---------- ---------- ---------- ---------- ENSP00000389630/1-723 NPALLVSPLL SLVAALMLAK CLQLNVKKGS FVAKIIKVIN FYLVCTLTIT ENSBTAP00000018107/1-723 NSALLVSPLL SLVVALMLAK CLQLNVKKGT FVAKIMKVIN FYLVCTLTVT bmy_10573T0/1-673 NSALLVSPLL SFVIALMLAK CLQLNVKKGT FVAKIMKVIN FYLVCTLTVI ENSTTRP00000004006/1-723 NSALLVSPLL SFVIALMLAK CLQLNVKKGT FVAKIMKVIN FYLVCTLTVT 401 450 BACU000495/1-383 ---------- ---------- ---------- -----NW--- ----QRPYSV ENSP00000389630/1-723 LNIIMKMFVP HKENGHMLKF LEVKFGLNMT KNFTMNWLLC QESLQAPSQD ENSBTAP00000018107/1-723 LNIIMKMFVP HKENGHMLKF LEVKFGLNMT KNFTMNWLLC QESLQAPSQD bmy_10573T0/1-673 LNIIMKMFVP HKENGHMLKF LEVKFGLNMT KNFTMNWLLC QESLQAPSQE ENSTTRP00000004006/1-723 LNIIMKMFVP HKENGHMLKF LEVKFGLNMT KNFTMNWLLC QESLQAPSQE 451 500 BACU000495/1-383 FAAVTREDFL HPFSRQ---- CF-------- ---------- ---------- ENSP00000389630/1-723 FFLRLTQSSL LPFYILVLII CFLSMLQVIF RRIN-GKSLK ETVTLEDGRI ENSBTAP00000018107/1-723 FFLRLTQSSL LPFYILVLII CFLSMIQVIF RRIN-DKSLK ETVTLEDGRI bmy_10573T0/1-673 FFLRLTQSSL LPFYILVLIT CFLSMIQVIF RRINSGKSLK ETITLEDGQI ENSTTRP00000004006/1-723 FFLRLTQSSL LPFYILVLIT CFLSMIQVIF RRIN-GKSLK ETITLEDGQI 501 550 BACU000495/1-383 ---------- ---------- ----CLKYLW TPYVCMLAAF GVCSPELWMT ENSP00000389630/1-723 GERPEIIYHV IHTILLGSLA MVIEGLKYIW IPYVCMLAAF GVCSPELWMT ENSBTAP00000018107/1-723 GERPEIIYHV IHTILLGSLA MIIEGLKYLW TPYVCMLAAF GVCSPELWMT bmy_10573T0/1-673 GERPEIIYHV IHTIXLGSLA MIIEGLKYLW TPYVCMLAAF GVCSPELWMT ENSTTRP00000004006/1-723 GERPEIIYHV IHTILLGSLA MIIEGVKYLW TPYVCMLAAF GVCSPELWMT 551 600 BACU000495/1-383 LFKWLRLRTV HPVLL----- ---------- ----FFPRLM TELMELQEFY ENSP00000389630/1-723 LFKWLRLRTV HPILLALILS MAVPTIIGLS LWKEFFPRLM TELMELQEFY ENSBTAP00000018107/1-723 LFKWLRLRTV HPVLLALILS MAVPTIIGLS LWKEFFPRLM TELMELQEFY bmy_10573T0/1-673 LFKWLRLRTV HPVLLALILS MAVPTIIGLS LWKEFFPRLM TELMELQEFY ENSTTRP00000004006/1-723 LFKWLRLRTV HPVLLALILS MAVPTIIGLS LWKEFFPRLM TELMELQEFY 601 650 BACU000495/1-383 DPDTVELMTW IKRQAPVAAV FAGSPQLMGV IKLCTGWMVT SLPLYNDDDL ENSP00000389630/1-723 DPDTVELMTW IKRQAPVAAV FAGSPQLMGA IKLCTGWMVT SLPLYNDDDL ENSBTAP00000018107/1-723 DPDTVELMTW IKRQAPVAAV FAGSPQLMGV IKLCTGWMVT SLPLYNDDDL bmy_10573T0/1-673 DPDTVELMTW IKRQAPVAAV FAGSPQLMGV IKLCTGWMVT SLPLYNDDDL ENSTTRP00000004006/1-723 DPDTVELMTW IKRQAPVAAV FAGSPQLMGV IKLCTGWMVT SLPLYNDDDL 651 700 BACU000495/1-383 LKRNENIYQI YSKRSAEDIY KILTSYKANY LIVEDAICSE VGPVRGCRVK ENSP00000389630/1-723 LKRNENIYQI YSKRSAEDIY KILTSYKANY LIVEDAICNE VGPMRGCRVK ENSBTAP00000018107/1-723 LKRNENIYQI YSKRSAEDIY KILTSYKASY LIVEDAICNE VGTMRGCRVK bmy_10573T0/1-673 LKRNENIYQI YSKRSAEDIY KILTSYKANY LIVEDAICNE VGTVRGCRVK ENSTTRP00000004006/1-723 LKRNENIYQI YSKRSAEDIY KILTSYKANY LIVEDAICNE VGTVRGCRVK 701 750 BACU000495/1-383 DLLDIANGHV VCEEGDKITY SKHGRFCHEV KINYSPYVNY FTRVYWNRSY ENSP00000389630/1-723 DLLDIANGHM VCEEGDKLTY SKYGRFCHEV KINYSPYVNY FTRVYWNRSY ENSBTAP00000018107/1-723 DLLDIANGHV VCEEGDKLTY SKHGRFCHEV KINYSPYVNY FTRVYWNRSY bmy_10573T0/1-673 DLLDIANGHV VCEEGDKITY SKHGRFCHEV KINYSPYVNY FTRVYWNRSY ENSTTRP00000004006/1-723 DLLDIANGHV VCEEGDKITY SKHGRFCHEV KINYSPYVNY FTRVYWNRSY 751 800 BACU000495/1-383 FVYKINTVIS FQS ENSP00000389630/1-723 FVYKINTVIS FQS ENSBTAP00000018107/1-723 FVYKINTVIS FQS bmy_10573T0/1-673 FVYKINTVIS FQS ENSTTRP00000004006/1-723 FVYKINTVIS FQS