KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:03:43 2014 Check: 00 .. Name: ENSTTRP00000006667/1-533 Len: 679 Check: 8993 Weight: 1.00 Name: ENSP00000327054/1-620 Len: 679 Check: 68 Weight: 1.00 Name: ENSBTAP00000018110/1-614 Len: 679 Check: 4926 Weight: 1.00 Name: bmy_06684T0/1-569 Len: 679 Check: 4057 Weight: 1.00 Name: BACU006502/1-541 Len: 679 Check: 7164 Weight: 1.00 // 1 50 ENSTTRP00000006667/1-533 ---------- ---------- ---------- ---------- ---------- ENSP00000327054/1-620 MSPPSPGRRR EQRRPRAAAT MATPLPGRAG GPATPLSPTR LSRLQEKEEL ENSBTAP00000018110/1-614 ---------- PRTTAAAAAA MATPQPGRAG GPSTPLSPTR LSRLQEKEEL bmy_06684T0/1-569 ---------- ---------- ---------- ---------- ---------- BACU006502/1-541 ---------- ---MSRGLRG AAAPPGGRAR SLRPQRRKGQ TGGGGEKEEL 51 100 ENSTTRP00000006667/1-533 ---------- ---------- ---------- --------VS GIKTLYEAEL ENSP00000327054/1-620 RELNDRLAHY IDRVRALELE NDRLLLKISE KEEVTTREVS GIKALYESEL ENSBTAP00000018110/1-614 RELNDRLAHY IDRVRALELE NDRLQLKISE REEVTTREVS GIKTLYEAEL bmy_06684T0/1-569 ---------- ---------- ---------- ------PQVS GIKTLYEAEL BACU006502/1-541 RELNDRLAHY IDRVRALELE NDRLQLKISE RE-----EVS GIKTLYEAEL 101 150 ENSTTRP00000006667/1-533 ADARRVLDET ARDRARLQIE TGKLRADLEE ANKSAKKREG ELTVAQGRVK ENSP00000327054/1-620 ADARRVLDET ARERARLQIE IGKLRAELDE VNKSAKKREG ELTVAQGRVK ENSBTAP00000018110/1-614 ADARRVLDET ARDRACLQIE MGKLRAELEE ATKSAKKREG ELTVAQGRVR bmy_06684T0/1-569 ADARRVLDET ARDRARLQIE IGKLRADLEE ANKSAKKREG ELTVAQGRVR BACU006502/1-541 ADARRVLDET ARDRARLQIE IGKLRADLEE ANKSAKKREG ELTVAQGRVR 151 200 ENSTTRP00000006667/1-533 DLESVFHQSE AELAAALSDK RALENDVVEL RAQLAKAEDG HAVAKKQLEK ENSP00000327054/1-620 DLESLFHRSE VELAAALSDK RGLESDVAEL RAQLAKAEDG HAVAKKQLEK ENSBTAP00000018110/1-614 DLESVFHRSE AELAAALSDK RTLENDVAEL RAQLAKAEDG HAVAKKQLEK bmy_06684T0/1-569 DLESVFHQSE AELAAALSDK RTLENDVVEL RAQLAKAEDG HAVAKKQLEK BACU006502/1-541 DLESVFHQSE AELAAALSDK RALENDVVEL RAQLAKAEDG HAVAKKQLEK 201 250 ENSTTRP00000006667/1-533 ETLMRVDLEN RCQSLQEELA FRKDVFE--- ---------- ---------- ENSP00000327054/1-620 ETLMRVDLEN RCQSLQEELD FRKSVFE--- ---------- ---------- ENSBTAP00000018110/1-614 ETLMRVDLEN RCQSLQEELA FRKDVFE--- ---------- ---------- bmy_06684T0/1-569 ETLMRVDLEN RCQSLQEELA FRKDAGA--- ---------- ---------V BACU006502/1-541 ETLMRVDLEN RCQSLQEELA FRKDVFEERV TVGTASPWWV GDAGEQAGAV 251 300 ENSTTRP00000006667/1-533 ------EEVR ETRRRHERRL VEVDSSRQQE YDFKMAQALE ELRAQHDEQV ENSP00000327054/1-620 ------EEVR ETRRRHERRL VEVDSSRQQE YDFKMAQALE ELRSQHDEQV ENSBTAP00000018110/1-614 ------EEVR ETRRRHERRL VEVDSSRQQE YDFKMAQALE ELRAQHDEQV bmy_06684T0/1-569 SARLCPQEVR ETRRRHEQRL VEVDSSRQQE YDFKMAQALE ELRAQHDEQV BACU006502/1-541 STRLCPQEVR ETRRRHEQRL VEVDSSRQQE YDFKMAQALE ELRAQHDEQV 301 350 ENSTTRP00000006667/1-533 RLYRLELEQT YQAKLDNAKL SSDQNDKAAS AAREELKEAR MRVESLSYQL ENSP00000327054/1-620 RLYKLELEQT YQAKLDSAKL SSDQNDKAAS AAREELKEAR MRLESLSYQL ENSBTAP00000018110/1-614 RLYRLELEQT YQAKLDNAKL SSDQNDKAAS AAREELKEAR MRVESLSYQL bmy_06684T0/1-569 RLYRLELEQT YQAKLDNAKL ISDQNDKAAS AAREELKEAR MRVESLSYQL BACU006502/1-541 RLYRLELEQT YQAK------ ---------- ---------- ---------- 351 400 ENSTTRP00000006667/1-533 SGLQKQANAA EDRIRELEET VAGERDKFRK MLDAKEREMT EMRDVMQQQL ENSP00000327054/1-620 SGLQKQASAA EDRIRELEEA MAGERDKFRK MLDAKEQEMT EMRDVMQQQL ENSBTAP00000018110/1-614 SSLQKQASAA EDRIRELEET VAGERDKFRK MLDAKEREMM EVRDMMQQQL bmy_06684T0/1-569 SGLQKQANAA EDRIRELEET VAGERDKFRK MLDAKEREMT EMRDVMQQQL BACU006502/1-541 ------ANAA EDRIRELEET VAGERDKFRK MLDAKEREMT EMRDVMQQQL 401 450 ENSTTRP00000006667/1-533 NEYQELLDVK LALDMEISAY RKLLEGEEER LKLSPSXXXX XXXXXXXXXX ENSP00000327054/1-620 AEYQELLDVK LALDMEINAY RKLLEGEEER LKLSPSPSSR VTVSRATSSS ENSBTAP00000018110/1-614 AEYQELLDVK LALDMEISAY RKLLEGEEER LKLSPSPSSR ITISRATTSS bmy_06684T0/1-569 AEYQELLDVK LALDMEISAY RKLLEGEEER LKLSPSPSSR ITISRATSSS BACU006502/1-541 AEYQELLDVK LALDMEISAY RKLLEGEEE- ---------- ---------- 451 500 ENSTTRP00000006667/1-533 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXX- --XXXXXXXX ENSP00000327054/1-620 SG-SLSATGR LGRSKRKRLE VEEPLGSGPS VLGTGTGGSG --GFHLAQQA ENSBTAP00000018110/1-614 SGSSVSTAGR PGRSKRKRLE VQEPPGTGSS GLGSSSSTSS GGSFHLAQQA bmy_06684T0/1-569 SGSSVSVSGR LGRSKRKRLE VQEPLGTGSS GTGLGSSGSS --SFRLAQQA BACU006502/1-541 ---------- ---------- ---------S GTGSGSSGSS --SFRLAQQA 501 550 ENSTTRP00000006667/1-533 XXXXXXXXXX XXXXXXXXXX XXXXXX---- ---------- ---------- ENSP00000327054/1-620 SASGSVSIEE IDLEGKFVQL KNNSDK---- ---------- ---------- ENSBTAP00000018110/1-614 SASGSVSIEE IDLEGRFVQL KNSSDK---- ---------- ---------- bmy_06684T0/1-569 SASGSISIEE IDLEGKFVQL KNSSDKVRPP PHPWGGPRVF SEPWANARPL BACU006502/1-541 SASSSISIEE IDLEGKFVQL KNSSDK---- ---------- ---------- 551 600 ENSTTRP00000006667/1-533 --XXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXVW AAGAGVAHSP ENSP00000327054/1-620 --DQSLGNWR IKRQVLEGEE IAYKFTPKYI LRAGQMVTVW AAGAGVAHSP ENSBTAP00000018110/1-614 --DQSLGNWR IKRQVLEGEE ISYKFTPKYV LRAGQTVTVW AAGAGVAHSP bmy_06684T0/1-569 CQDQSLGNWR IKRQILEGEE IAYKFTPKYV LRAGQTVTVW AAGAGVAHSP BACU006502/1-541 --DQSLGNWR IKRQILEGEE IAYKFTPKYV LRAGQTVTVW AAGAGVAHSP 601 650 ENSTTRP00000006667/1-533 PSTLVWKSQN SWGTGESFRT ILVNADGEEV AMRTVKQSSV AREAEDGEEG ENSP00000327054/1-620 PSTLVWKGQS SWGTGESFRT VLVNADGEEV AMRTVKKSSV MRENENGEE- ENSBTAP00000018110/1-614 PSTLVWKSQN SWGTGESFRT TLVNADGEEV AMRTVKQSSV VRETENGEEG bmy_06684T0/1-569 PSTLVWKSQN SWGTGESFRT IVVNADGEEV AMRTVKQSSV VREAENGEEG BACU006502/1-541 PSTLVWKSQN SWGTGESFRT VVVNADGEEV AMRTVKQSSV VREAENGEEG 651 700 ENSTTRP00000006667/1-533 EDEAAEFGEE DLFHQQGDPR TTSRGCRVM ENSP00000327054/1-620 EEEEAEFGEE DLFHQQGDPR TTSRGCYVM ENSBTAP00000018110/1-614 EDEAAEFGEE DLFHQQGDPR TTSRGCRVM bmy_06684T0/1-569 EDEAAEFGEE DLFHQQGDPR TTSRGCRVM BACU006502/1-541 EDEAAEFGEE DLFHQQGDPR TTSRGCRVM