KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:03:44 2014 Check: 00 .. Name: ENSTTRP00000006227/1-912 Len: 997 Check: 1001 Weight: 1.00 Name: ENSBTAP00000018119/1-996 Len: 997 Check: 6535 Weight: 1.00 Name: bmy_18973T0/1-549 Len: 997 Check: 3678 Weight: 1.00 Name: ENSP00000440556/1-912 Len: 997 Check: 9786 Weight: 1.00 Name: BACU012212/1-912 Len: 997 Check: 212 Weight: 1.00 // 1 50 ENSTTRP00000006227/1-912 MPGKRGWGWW WARLLLCLLL SLSGPWVPSS LGKPKGHPQM NSIRIDGDIT ENSBTAP00000018119/1-996 MPGKRGWGWW WAQLPLCLLL SLSGPWVPSS LGKPKGHPHM NSIRIDGDIT bmy_18973T0/1-549 -----GLLWF ---------- ---PPYI--- ---------- ---------- ENSP00000440556/1-912 MPGKRGLGWW WARLPLCLLL SLYGPWMPSS LGKPKGHPHM NSIRIDGDIT BACU012212/1-912 MPGKRGWGWQ WARLLLCLLL SLSGPWVPSS LGKPKGHPQM NSIRIDGDIT 51 100 ENSTTRP00000006227/1-912 LGGLFPVHGR GSEGKACGEL KKEKGIHRLE AMLFALDRIN NDPDLLPNIT ENSBTAP00000018119/1-996 LGGLFPVHGR GSEGKACGEL KKEKGIHRLE AMLFALDRIN NDPDLLPNIT bmy_18973T0/1-549 ---------- ---------- ---------- ---------- ---------- ENSP00000440556/1-912 LGGLFPVHGR GSEGKPCGEL KKEKGIHRLE AMLFALDRIN NDPDLLPNIT BACU012212/1-912 LGGLFPVHGR GSEGKACGEL KKEKGIHRLE AMLFALDRIN NDPDLLPNIT 101 150 ENSTTRP00000006227/1-912 LGARILDTCS RDTHALEQSL TFVQALIEKD GTEVRCGSGG PPIITKPERV ENSBTAP00000018119/1-996 LGARILDTCS RDTHALEQSL TFVQALIEKD GTEVRCGSGG PPIITKPERV bmy_18973T0/1-549 ---------- ---------- ---------- -----CEDGG PH-------- ENSP00000440556/1-912 LGARILDTCS RDTHALEQSL TFVQALIEKD GTEVRCGSGG PPIITKPERV BACU012212/1-912 LGARILDTCS RDTHALEQSL TFVQALIEKD GTEVRCGSGG PPIITKPERV 151 200 ENSTTRP00000006227/1-912 VGVIGASGSS VSIMVANILR FFKIPQISYA STAPDLSDNS RYDFFSRVVP ENSBTAP00000018119/1-996 VGVIGASGSS VSIMVANILR LFKIPQISYA STAPDLSDNS RYDFFSRVVP bmy_18973T0/1-549 ---------- ---------- ---------- ---------- ---------- ENSP00000440556/1-912 VGVIGASGSS VSIMVANILR LFKIPQISYA STAPDLSDNS RYDFFSRVVP BACU012212/1-912 VGVIGASGSS VSIMVANILR LFKIPQISYA STAPDLSDNS RYDFFSRVVP 201 250 ENSTTRP00000006227/1-912 SDTYQAQAMV DIVRALKWNY VSTLASEGSY GESGVEAFVQ KSREDGGVCI ENSBTAP00000018119/1-996 SDTYQAQAMV DIVRALKWNY VSTLASEGSY GESGVEAFMQ KSREDGGVCI bmy_18973T0/1-549 ---------- ---------- ---------- GRPHSEYFV- ---------- ENSP00000440556/1-912 SDTYQAQAMV DIVRALKWNY VSTVASEGSY GESGVEAFIQ KSREDGGVCI BACU012212/1-912 SDTYQAQAMV DIVRALKWNY VSTLASEGSY GESGVEAFIQ KSREDGGVCI 251 300 ENSTTRP00000006227/1-912 AQSVKIPREP KPGEFDKIIR RLLETSNARA VIIFANEDDI RHVLEAARKA ENSBTAP00000018119/1-996 AQSVKIPREP KPGEFDKIIR RLLETSNARA VIIFANEDDI RRVLEAARKA bmy_18973T0/1-549 ---------- ---------- ---------- ---------- ---------- ENSP00000440556/1-912 AQSVKIPREP KAGEFDKIIR RLLETSNARA VIIFANEDDI RRVLEAARRA BACU012212/1-912 AQSVKIPREP KPGEFDKIIR RLLETSNARA VIIFANEDDI RRVLEAARKA 301 350 ENSTTRP00000006227/1-912 NQTGHFFWMG SDSWGSKIAP VLHLEEVAEG AVTILPKRMS VRGFDRYFSS ENSBTAP00000018119/1-996 NQTGHFFWMG SDSWGSKIAP VLHLEEVAEG AVTILPKRMS VRGFDRYFSS bmy_18973T0/1-549 ---------- ---------- ---------- ---------- ---------- ENSP00000440556/1-912 NQTGHFFWMG SDSWGSKIAP VLHLEEVAEG AVTILPKRMS VRGFDRYFSS BACU012212/1-912 NQTGHFFWMG SDSWGSKIAP VLHLEEVAEG AVTILPKRMS VRGFDRYFSS 351 400 ENSTTRP00000006227/1-912 RTLDNNRRNI WFAEFWEDNF HCKLSRHALK KGSHVKKCTS RERIGQDSAY ENSBTAP00000018119/1-996 RTLDNNRRNI WFAEFWEDNF HCKLSRHALK KGSHVKKCTN RERIGQDSAY bmy_18973T0/1-549 ---------- ---------- ---------- --------AD RERIGQDSAY ENSP00000440556/1-912 RTLDNNRRNI WFAEFWEDNF HCKLSRHALK KGSHVKKCTN RERIGQDSAY BACU012212/1-912 RTLDNNRRNI WFAEFWEDNF HCKLSRHALK KGSHVKKCTN RERIGQDSAY 401 450 ENSTTRP00000006227/1-912 EQEGKVQFVI DAVYAMGHAL HAMHRDLCPG RVGLCPRMDP VDGTQLLKYI ENSBTAP00000018119/1-996 EQEGKVQFVI DAVYAMGHAL HAMHRDLCPG RVGLCPRMDP VDGTQLLKYI bmy_18973T0/1-549 EQEGKVQFVI DAVYAMGHAL HAMHRDLCPG RVGLCPRMDP VDGTQLLKYI ENSP00000440556/1-912 EQEGKVQFVI DAVYAMGHAL HAMHRDLCPG RVGLCPRMDP VDGTQLLKYI BACU012212/1-912 EQEGKVQFVI DAVYAMGHAL HAMHRDLCPG RVGLCPRMDP VDGTQLLKYI 451 500 ENSTTRP00000006227/1-912 RSVNFSGIAG NPVTFNENGD APGRYDIYQY QLRNGSAEYK VIGSWTDHLH ENSBTAP00000018119/1-996 RNVNFSGIAG NPVTFNENGD APGRYDIYQY QLRNGSAEYK VIGSWTDHLH bmy_18973T0/1-549 RSVNFSGIAG NPVTFNENGD APGRYDIYQY QLHNGSAEYK VIGSWTDHLH ENSP00000440556/1-912 RNVNFSGIAG NPVTFNENGD APGRYDIYQY QLRNDSAEYK VIGSWTDHLH BACU012212/1-912 RSVNFSGIAG NPVTFNENGD APGRYDIYQY QLHNGSAEYK VIGSWTDHLH 501 550 ENSTTRP00000006227/1-912 LRIERMHWPG SGQQLPRSIC SLPCQPGERK KTEKVMPCCW HCXXXXXXXX ENSBTAP00000018119/1-996 LRIERMLWPG SGQQLPRSVC SLPCQPGERK KTVKGMPCCW HCEPCTGYQY bmy_18973T0/1-549 LRIERMQWPG SGQQLPRSIC SLPCQPGERK KTVKGMPCCW HCEPCTGYQY ENSP00000440556/1-912 LRIERMHWPG SGQQLPRSIC SLPCQPGERK KTVKGMPCCW HCEPCTGYQY BACU012212/1-912 LRIERMQWPG SGQQLPRSIC SLPCQPGERK KTVKGMPCCW HCEPCTGYQY 551 600 ENSTTRP00000006227/1-912 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000018119/1-996 QVDGYTCKAC PYDMRPTENR TGCRPIPIIK LEWGSPWAVL PLFLAVAGIA bmy_18973T0/1-549 QVDRYTCKTC PYDMRPTENR TGCQPIPIIK LEWDSPWAVL PLFLAVVGIA ENSP00000440556/1-912 QVDRYTCKTC PYDMRPTENR TGCRPIPIIK LEWGSPWAVL PLFLAVVGIA BACU012212/1-912 QVDRYTCKTC PYDMRPTENR TGCQPIPIIK LEWDSPWAVL PLFLAVVGIA 601 650 ENSTTRP00000006227/1-912 XXXXXXXXXX XXXXXXXXXX XXRELSYVLL AGIFLCYATT FLMIAEPDLG ENSBTAP00000018119/1-996 ATLFVVVTFV RYNDTPIVKA SGRELSYVLL AGIFLCYATT FLMIAEPDLG bmy_18973T0/1-549 ATLFVVVTFV RYNDTPIVKA SGRELSYVLL AGIFLCYATT FLMIAEPDLG ENSP00000440556/1-912 ATLFVVITFV RYNDTPIVKA SGRELSYVLL AGIFLCYATT FLMIAEPDLG BACU012212/1-912 ATLFVVVTFV RYNDTPIVKA SGRELSYVLL AGIFLCYATT FLMIAEPDLG 651 700 ENSTTRP00000006227/1-912 TCSLRRIFLG LGMSISYAAL LTKTNRIYRI FEQGKRSVSA PRFISPASQL ENSBTAP00000018119/1-996 TCSLRRIFLG LGMSISYAAL LTKTNRIYRI FEQGKRSVSA PRFISPASQL bmy_18973T0/1-549 TCSLRRIFLG LGMSISYAAL LTKTNRIYRI FEQGKRSVSA PRFISPASQL ENSP00000440556/1-912 TCSLRRIFLG LGMSISYAAL LTKTNRIYRI FEQGKRSVSA PRFISPASQL BACU012212/1-912 TCSLRRIFLG LGMSISYAAL LTKTNRIYRI FEQGKRSVSA PRFISPASQL 701 750 ENSTTRP00000006227/1-912 AITFSLISLQ LLGICVWFVV DPSHSVVDFQ DQRTLDPRFA RGVLKCDISD ENSBTAP00000018119/1-996 AITFSLISLQ LLGICVWFVV DPSHSVVDFQ DQRTLDP-LR RGVLKCDISD bmy_18973T0/1-549 AITFSLISLQ LLGICVWFVV DPSHSVVDFQ DQRTLDPRFA RGVLKCDISD ENSP00000440556/1-912 AITFSLISLQ LLGICVWFVV DPSHSVVDFQ DQRTLDPRFA RGVLKCDISD BACU012212/1-912 AITFSLISLQ LLGICVWFVV DPSHSVVDFQ DQRTLDPRFA RGVLKCDISD 751 800 ENSTTRP00000006227/1-912 LSLICLLGYS MLLMVTCTVY AIKTRGVPET FNEAKPIGFT MYTTCIVWLA ENSBTAP00000018119/1-996 LSLICLLGYS MLLMVTCTVY AIKTRGVPET FNEAKPIGFT MYTTCIVWLA bmy_18973T0/1-549 LSLICLLGYS MLLMVTCTVY AIKTRGVPET FNEAKPIGFT MYTTCIVWLA ENSP00000440556/1-912 LSLICLLGYS MLLMVTCTVY AIKTRGVPET FNEAKPIGFT MYTTCIVWLA BACU012212/1-912 LSLICLLGYS MLLMVTCTVY AIKTRGVPET FNEAKPIGFT MYTTCIVWLA 801 850 ENSTTRP00000006227/1-912 FIPIFFGTSQ SADKXXXXXX XXXXXXXXXX XXXXXXXYMP KVYIILFH-- ENSBTAP00000018119/1-996 FIPIFFGTSQ SADKLYIQTT TLTVSVSLSA SVSLGMLYMP KVYIILFHLP bmy_18973T0/1-549 FIPIFFGTSQ SADKLYIQTT TLTVSVSLSA SVSLGMLYMP KVYIILFH-- ENSP00000440556/1-912 FIPIFFGTSQ SADKLYIQTT TLTVSVSLSA SVSLGMLYMP KVYIILFH-- BACU012212/1-912 FIPIFFGTSQ SADKLYIQTT TLTVSVSLSA SVSLGMLYMP KVYIILFH-- 851 900 ENSTTRP00000006227/1-912 ---------- ---------- --PEQNVPKR KRSLKAV--- -----VTAAT ENSBTAP00000018119/1-996 PLECRWPHPV LMLPGPCISS LFPSLPSPAL SRLFSCAPPV SHFSFLSSAP bmy_18973T0/1-549 ---------- ---------- --PEQNVPKR KRSLKAV--- -----VTAAT ENSP00000440556/1-912 ---------- ---------- --PEQNVPKR KRSLKAV--- -----VTAAT BACU012212/1-912 ---------- ---------- --PEQNVPKR KRSLKAV--- -----VTAAT 901 950 ENSTTRP00000006227/1-912 MSNKFTQKGS FRP------- ---------- ---------- -------NGE ENSBTAP00000018119/1-996 SSPSFPSPCH LLPIHQILHV AKEKKRRKKN QNTKKPKQKQ IPSVLPSAAS bmy_18973T0/1-549 MSNKFTQKGS LRP------- ---------- ---------- -------NGE ENSP00000440556/1-912 MSNKFTQKGN FRP------- ---------- ---------- -------NGE BACU012212/1-912 MSNKFTQKGS LRP------- ---------- ---------- -------NGE 951 1000 ENSTTRP00000006227/1-912 AKSELC---- ---------- ----ENLEAP ALATKQTYVA Y-TNHAI ENSBTAP00000018119/1-996 SPWPLCVPAA RSLPACPPPS AACAARLPAA PPADDTEFSA WVSGDGY bmy_18973T0/1-549 AKSELC---- ---------- ----ENLEAP ALATKQTYVA Y-TNHAI ENSP00000440556/1-912 AKSELC---- ---------- ----ENLEAP ALATKQTYVT Y-TNHAI BACU012212/1-912 AKSELC---- ---------- ----ENLEAP ALATKQTYVA Y-TNHAI