KEY:
ENSP* - Homo sapiens (Human)
ENSBTA* - Bos taurus (Cow)
ENSTTR* - Tursiops truncatus (Dolphin)
bmy_* - Balaena mysticetus (Bowhead whale)
BACU* - Balaenoptera acutorostrata (Minke whale)
Copy from below the line for a valid .msf file.
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NoName MSF: 5 Type: P Thu May 15 17:03:45 2014 Check: 00 ..
Name: ENSBTAP00000018128/1-1101 Len: 1166 Check: 1691 Weight: 1.00
Name: ENSP00000412178/1-1117 Len: 1166 Check: 3790 Weight: 1.00
Name: ENSTTRP00000015659/1-1118 Len: 1166 Check: 8028 Weight: 1.00
Name: bmy_04106T0/1-1125 Len: 1166 Check: 4013 Weight: 1.00
Name: BACU008945/1-1121 Len: 1166 Check: 3798 Weight: 1.00
//
1 50
ENSBTAP00000018128/1-1101 METFIKRHFQ RKAPGPGEGP RRPSGVGLPT SKARRRSPAG QASSSLAQRR
ENSP00000412178/1-1117 METFFRRHFR GKVPGPGEGQ QRPSSVGLPT GKARRRSPAG QASSSLAQRR
ENSTTRP00000015659/1-1118 METFFRRHFQ RKAPGPGEGQ RRPGGVGLPT GKARRRSPAG QASSSLVQRR
bmy_04106T0/1-1125 METFFRRHFQ RKASGPGEGQ RWPGGVGLPT GKARRRSPAG QASSSLVQRR
BACU008945/1-1121 METFFRRHFQ RKASGPGEGQ RRPGGVGLPT GKARRRSPAG QASSSLVQRR
51 100
ENSBTAP00000018128/1-1101 RSSAQLQGCL LGCGVGAPRP GRRRRSSTAP PACNPRFAVE EVPT-QPQPA
ENSP00000412178/1-1117 RSSAQLQGCL LSCGVRAQGS S-RRRSSTVP PSCNPRFIVD KVLT--PQPT
ENSTTRP00000015659/1-1118 RSSAQLQGCL LGCGVGAPRS S-RRRSSTAP PACNPRFTVD EVPA--LQPA
bmy_04106T0/1-1125 RSSAQLQGCL LGCGVGAPHS S-RRRSSTAP PACNPRFTVD EVPALQLQPA
BACU008945/1-1121 RSSAQLQGCL LGCGVGAPRS S-RRRSSTAP PACNPRFTVD EVPALQLQPA
101 150
ENSBTAP00000018128/1-1101 VVGPQLLVAP LLLAGLVGME DEEGLQKEDV RVALPSAAQP GSGTPGPSPP
ENSP00000412178/1-1117 TVGAQLLGAP LLLTGLVGMN EEEGVQEDVV AEASS-AIQP GTKTPGPP--
ENSTTRP00000015659/1-1118 TVGALRLGAP LLLAGLLGMD EEEGVQEEDV TVASLAATQP GTKRPGPS--
bmy_04106T0/1-1125 AVGAPRLGAP LLLAGLVGMD EEEGVQEEDV TVASL-ATQP GTKRPGPS--
BACU008945/1-1121 AVGAPCLGAP LLLAGLVGMD EEEGVQEEDV TVASL-ATQP GIKRPGPS--
151 200
ENSBTAP00000018128/1-1101 PPRSALPLLP VPRWRRRRAS SQLLPADVVK DHGLWGLHGH YRRLSQPRPV
ENSP00000412178/1-1117 PPRGAQPLLP LPRY-LRRAS SHLLPADAVY DHALWGLHGY YRRLSQRRPS
ENSTTRP00000015659/1-1118 PHRGALPVLP IPRWRRRRAS SHLLPADVVK DRALWGLHGY YRPLSPQRPS
bmy_04106T0/1-1125 PHRGALPLLP IPR--RRRAS SHLLPADVVK DRALWGLHGY YRPLSQQRPS
BACU008945/1-1121 PHRGALPLLP IPRWRRRRAS SHLLPADVVK DRALWGLHGY YRPLSQQRPS
201 250
ENSBTAP00000018128/1-1101 SQNPTPGGRR ASGTAAGLGM PARVRPLCRR RQVALRRKSA GPQTWSALLA
ENSP00000412178/1-1117 GQHPGPGGRR ASGTTAGTML PTRVRPLSRR RQVALRRKAA GPQAWSALLA
ENSTTRP00000015659/1-1118 GQHLSLGGRK ASGTAAGPRM PACVRPLSRR RQVALRRKSA GPQTWSALLA
bmy_04106T0/1-1125 GQHLSLGGQR ASGTAAGPGM PACVRPLSRR RQVALRRKSA GPQTWSALLA
BACU008945/1-1121 GQHLSLGGRR ASGTAAGPGM PACVRPLSRR RQVALRRKSA GPQTWSALLA
251 300
ENSBTAP00000018128/1-1101 KAITKSGLQH LAPPPPAPGA PCSEPERQIR STVDWSESAT YGEHIWFETN
ENSP00000412178/1-1117 KAITKSGLQH LAPPPPTPGA PCSESERQIR STVDWSESAT YGEHIWFETN
ENSTTRP00000015659/1-1118 KAITKSGLQH LAPPPPAPGA PRSEPERQIR STVDWSESAT YGEHIWFETN
bmy_04106T0/1-1125 KAITKSGLQH LAPPPPAPGA PRSEPERQIR STVDWSESAT YGEHIWFETN
BACU008945/1-1121 KAITKSGLQH LAPPPPAPGA PRSEPERQIR STVDWSESAT YGEHIWFETN
301 350
ENSBTAP00000018128/1-1101 VSGDFCYVGE QYCVAKMLQK SVSRRKCAAC KIVVHTPCIE QLEKINFRCK
ENSP00000412178/1-1117 VSGDFCYVGE QYCVARML-K SVSRRKCAAC KIVVHTPCIE QLEKINFRCK
ENSTTRP00000015659/1-1118 VSGDFCYVGE QYCVAKML-K SVSRRKCAAC KIVVHTPCIE QLEKXXXXXX
bmy_04106T0/1-1125 VSGDFCYVGE QYCVAXMLQK SVSRRKCAAC KIVVHTPCIE QLEKINFRCK
BACU008945/1-1121 VSGDFCYVGE QYCVAKMLQK SVSRRKCAAC KIVVHTPCIE QLEKINFRCK
351 400
ENSBTAP00000018128/1-1101 PSFRESGSRN VREPTFVRHH WVHRRRQDGK CRHCGKGFQQ KFTFHSKEIV
ENSP00000412178/1-1117 PSFRESGSRN VREPTFVRHH WVHRRRQDGK CRHCGKGFQQ KFTFHSKEIV
ENSTTRP00000015659/1-1118 XXXXXXXXXX XXXPTFVRHH WVHRRRQDGK CRHCGKGFQQ KFTFHSKEIV
bmy_04106T0/1-1125 PSFRESGSRN VREPTFVRHH WVHRRRQDGK CRHCGKGFQQ KFTFHSKEIV
BACU008945/1-1121 PSFRESGSRN VREPTFVRHH WVHRRRQDGK CRHCGKGFQQ KFTFHSKEIV
401 450
ENSBTAP00000018128/1-1101 AISCSWCKQA YHSKVSCFML QQIEEPCSLG VHAAVVIPPT WILRARRPQN
ENSP00000412178/1-1117 AISCSWCKQA YHSKVSCFML QQIEEPCSLG VHAAVVIPPT WILRARRPQN
ENSTTRP00000015659/1-1118 AISCSWCKQA YHSKVSCFMM QQIEEPCSLG VHAAVVIPPT WILRARRPQN
bmy_04106T0/1-1125 AISCSWCKQA YHSKVSCFML QQIEEPCSLG VHAAVVIPPT WILRARRPQN
BACU008945/1-1121 AISCSWCKQA YHSKVSCFML QQIEEPCSLG VHAAVVIPPT WILRARRPQN
451 500
ENSBTAP00000018128/1-1101 TLKASKKKKR ASFKRKSSKK GPEEGRWRPF IIRPTPSPLM KPLLVFVNPK
ENSP00000412178/1-1117 TLKASKKKKR ASFKRKSSKK GPEEGRWRPF IIRPTPSPLM KPLLVFVNPK
ENSTTRP00000015659/1-1118 TLKASKKKKR ASFKRKSSKK GPEEGRWRPF IIRPTPSPLM KPLLVFVNPK
bmy_04106T0/1-1125 TLKASKKKKR ASFKRKSSKK GPEEGRWRPF IIRPTPSPLM KPLLVFVNPK
BACU008945/1-1121 TLKASKKKKR ASFKRKSSKK GPEEGRWRPF IIRPTPSPLM KPLLVFVNPK
501 550
ENSBTAP00000018128/1-1101 SGGNQGAKII QSFLWYLNPR QVFDLSQGGP REALEMYRRV HNLRILACGG
ENSP00000412178/1-1117 SGGNQGAKII QSFLWYLNPR QVFDLSQGGP KEALEMYRKV HNLRILACGG
ENSTTRP00000015659/1-1118 SGGNQGAKII QSFLWYLNPR QVFDLSQGGP KEALEMYRRV HNLRILACGG
bmy_04106T0/1-1125 SGGNQGAKII QSFLWYLNPR QVFDLSQGGP KEALEMYRRV HNLRILACGG
BACU008945/1-1121 SGGNQGAKII QSFLWYLNPR QVFDLSQGGP KEALEMYRRV HNLRILACGG
551 600
ENSBTAP00000018128/1-1101 DGTVGWILST LDQLRLKPPP PVAILPLGTG NDLARTLNWG GGYTDEPVSK
ENSP00000412178/1-1117 DGTVGWILST LDQLRLKPPP PVAILPLGTG NDLARTLNWG GGYTDEPVSK
ENSTTRP00000015659/1-1118 DGTVGWILST LDQLRLKPPP PVAILPLGTG NDLARTLNWG GGYTDEPVSK
bmy_04106T0/1-1125 DGTVGWILST LDQLRLKPPP PVAILPLGTG NDLARTLNWG GGYTDEPVSK
BACU008945/1-1121 DGTVGWILST LDQLRLKPPP PVAILPLGTG NDLARTLNWG GGYTDEPVSK
601 650
ENSBTAP00000018128/1-1101 ILSHVEEGNV VQLDRWDLHA EPNPEAGPEE RDEGATDQLP LDVFNNYFSL
ENSP00000412178/1-1117 ILSHVEEGNV VQLDRWDLHA EPNPEAGPED RDEGATDRLP LDVFNNYFSL
ENSTTRP00000015659/1-1118 ILSHVEEGNV VQLDRWDLRA EPNPEAGPEE RDEGATDRLP LNVFNNYFSL
bmy_04106T0/1-1125 ILSHVEEGNV VQLDRWDLRV EPNPEAGPEE RDEGATDRV- ----------
BACU008945/1-1121 ILSHVEEGNV VQLDRWDLRA EPNPEAGPEE RDEGATDRLP LDVFNNYFSL
651 700
ENSBTAP00000018128/1-1101 GFDAHVTLEF HESREANPEK FNSRFRNKMF YAGTAFSDFL MGSSKDLAKH
ENSP00000412178/1-1117 GFDAHVTLEF HESREANPEK FNSRFRNKMF YAGTAFSDFL MGSSKDLAKH
ENSTTRP00000015659/1-1118 G-DAHVTLEF HESREANPEK FNSRFRNKMF YAGTAFSDFL MGSSKDLAKH
bmy_04106T0/1-1125 ---------- ----EANPEK FNSRFRNKMF YAGTAFSDFL MGSSKDLAKH
BACU008945/1-1121 GFDAHVTLEF HESREANPEK FNSRFRNKMF YAGTAFSDFL MGSSKDLAKH
701 750
ENSBTAP00000018128/1-1101 IRVVVSG--L CPQAGWVGPA GGIPPGCICP QPRPPVPACS V-MGLPGKRK
ENSP00000412178/1-1117 IRVVCDGMDL TPK------I QDLKPQCVVF LNIPRYCAGT MPWGHPGEHH
ENSTTRP00000015659/1-1118 IRVVCDGTDL TPK------I QDLKPQCIVF LNIPRYCAGT MPWGHPGEHH
bmy_04106T0/1-1125 IRVVCDGTDL TPK------I QDLKPQCIVF LNIPRYCAGT MPWGHPGEHH
BACU008945/1-1121 IRVVCDGTDL TPK------I QDLKPQCIVF LNIPRYCAGT MPWGHPGEHH
751 800
ENSBTAP00000018128/1-1101 ACGPA----G PWPLTLSLPC PQAALQVGGH GERLTQCREV LLTTSKAIPV
ENSP00000412178/1-1117 DFEPQRHDDG YLEVIGFTMT SLAALQVGGH GERLTQCREV VLTTSKAIPV
ENSTTRP00000015659/1-1118 DFEPQRHDDG YLEVIGFTMT SLAALQVGGH GERLTQCREV LLTTSKAIPV
bmy_04106T0/1-1125 DFEPQRHDDG YLEVIGFTMT SLAALQVGGH GERLTQCREV LLTTSKAIPV
BACU008945/1-1121 DFEPQRHDDG YLEVIGFTMT SLAALQVGGH GERLTQCREV LLTTSKAIPV
801 850
ENSBTAP00000018128/1-1101 QVDGEPCKLA ASRIRIALRN QATMVQKAKR RSAAPLHSDQ QPVPEQLRVQ
ENSP00000412178/1-1117 QVDGEPCKLA ASRIRIALRN QATMVQKAKR RSAAPLHSDQ QPVPEQLRIQ
ENSTTRP00000015659/1-1118 QVDGEPCKLA ASCIRISLRN QATMVQKAKR RSAAPLHSDQ QPVPEQLRIQ
bmy_04106T0/1-1125 QVDGEPCKLA ASRIRISLRN QATMVQKAKR RSAAPLHSDQ QPVPEQLRIQ
BACU008945/1-1121 QVDGEPCKLA ASRIRISLRN QATMVQKAKR RSAAPLHSDQ QPVPEQLRVQ
851 900
ENSBTAP00000018128/1-1101 VSRVSMHDYE ALHYDKEQLK EASVPLGTVV VPGDSDLELC RAHIERLRQE
ENSP00000412178/1-1117 VSRVSMHDYE ALHYDKEQLK EASVPLGTVV VPGDSDLELC RAHIERLQQE
ENSTTRP00000015659/1-1118 VSRVSMHDYE ALHYDKEQLK EASVPLGTVV VPGDSDLELC RAHIERLRQE
bmy_04106T0/1-1125 VSRVSMHDYE ALHYDKEQLK EASVPLGTVV VPGDSDLELC RAHIERLRQE
BACU008945/1-1121 VSRVSMHDYE ALHYDKEQLK EASVPLGTVV VPGDSDLELC RAHIERLRQE
901 950
ENSBTAP00000018128/1-1101 PEGAGAKSPM CQKLSPKWCF LDATTASRFY RIDRAQPVTS HVTLSFHVIL
ENSP00000412178/1-1117 PDGAGAKSPT CQKLSPKWCF LDATTASRFY RIDRAQEHLN YVT---EIAQ
ENSTTRP00000015659/1-1118 PEGAGAKSPT CQKLSPKWCF LDATTASRFY RIDRAQEHLN YVT---EIAQ
bmy_04106T0/1-1125 PEDAGAKSPT CQKLSPKWCF LDATTASRFY RIDRAQEHLN YVT---EIAR
BACU008945/1-1121 PEDAGATPPT CQKLSPKWCF LDATTASRFY RIDRAQEHLN YVT---EIAQ
951 1000
ENSBTAP00000018128/1-1101 SHPVTLSPQV VVTSH----P VTSSHLVTSP CHISFCRSLP GDAAPPTGEE
ENSP00000412178/1-1117 DEIYILDPEL LGASARPDLP TPTSPLPTSP CS-PTPRSLQ GDAAPPQGEE
ENSTTRP00000015659/1-1118 DEIYILDPEL LGASARPDLP TPSSPLPTSP CS-PRPRSLP GDAAPPTGEE
bmy_04106T0/1-1125 DEIYILDPEL LGASARPDLP TPSSPLPTSP CS-PRPRSLP GDAAPPTGEE
BACU008945/1-1121 DEIYILDPEL LGASARPDLP TPSSPLPSSP CS-PRPRSLP GDAAPPTGEE
1001 1050
ENSBTAP00000018128/1-1101 LIEAAKRNDF CKLQELHRAG GDLMHRVERS RTLLHHAVST GSKEVVRYLL
ENSP00000412178/1-1117 LIEAAKRNDF CKLQELHRAG GDLMHRDEQS RTLLHHAVST GSKDVVRYLL
ENSTTRP00000015659/1-1118 LIEAAKRNDF CKLQELHRAG GDLMHRDERG RTLLHHAVST GSKEVVRYLL
bmy_04106T0/1-1125 LIEAAKRNDF CKLQELHRAG GDLMHRDERS RTLLHHAVST GSKEVVRYLL
BACU008945/1-1121 LIEAAKRNDF CKLQELHRAG GDLMHRDKRS RTLLHHAVST GSKEVVRYLL
1051 1100
ENSBTAP00000018128/1-1101 EHAPTEILDA VEEK------ ---------- ---------- -----GD---
ENSP00000412178/1-1117 DHAPPEILDA VEEN------ ---------- ---------- -----GETCL
ENSTTRP00000015659/1-1118 DHAPTEILDA VEEN------ ---------- ---------- -----GETCL
bmy_04106T0/1-1125 DHAPTEILDA VEEKTLNFLP FLMAFGRQEG SEDWMGSTAS PCSPSGETCL
BACU008945/1-1121 DHAPTEILDA VEEN------ ---------- ---------- -----GETCL
1101 1150
ENSBTAP00000018128/1-1101 ---------- --------GS SPPRS-HQGD TPRQRAEKAQ DTELAAYLEN
ENSP00000412178/1-1117 HQAAALGQRT ICHYIVEAGA SLMKTDQQGD TPRQRAEKAQ DTELAAYLEN
ENSTTRP00000015659/1-1118 HQAAALGQRT ICHYIVEAGA SLMKTDQQGD TPRQRAERAQ DTELAAYLEN
bmy_04106T0/1-1125 HQAAALGQRT ICHYIVEAGA SLMKTDQQGD TPRQRAEKAQ DTELAAYLEN
BACU008945/1-1121 HQAAALGQRT ICHYIVEAGA SLMKTDQQGD TPRQRAEKAQ DTELAAYLEN
1151 1200
ENSBTAP00000018128/1-1101 RQHYQMIQRE DQETAV
ENSP00000412178/1-1117 RQHYQMIQRE DQETAV
ENSTTRP00000015659/1-1118 RQHYQMIQRE DQETAV
bmy_04106T0/1-1125 RQHYQMIQRE DQETAV
BACU008945/1-1121 RQHYQMIQRE DQETAV