KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:03:45 2014 Check: 00 .. Name: ENSBTAP00000018128/1-1101 Len: 1166 Check: 1691 Weight: 1.00 Name: ENSP00000412178/1-1117 Len: 1166 Check: 3790 Weight: 1.00 Name: ENSTTRP00000015659/1-1118 Len: 1166 Check: 8028 Weight: 1.00 Name: bmy_04106T0/1-1125 Len: 1166 Check: 4013 Weight: 1.00 Name: BACU008945/1-1121 Len: 1166 Check: 3798 Weight: 1.00 // 1 50 ENSBTAP00000018128/1-1101 METFIKRHFQ RKAPGPGEGP RRPSGVGLPT SKARRRSPAG QASSSLAQRR ENSP00000412178/1-1117 METFFRRHFR GKVPGPGEGQ QRPSSVGLPT GKARRRSPAG QASSSLAQRR ENSTTRP00000015659/1-1118 METFFRRHFQ RKAPGPGEGQ RRPGGVGLPT GKARRRSPAG QASSSLVQRR bmy_04106T0/1-1125 METFFRRHFQ RKASGPGEGQ RWPGGVGLPT GKARRRSPAG QASSSLVQRR BACU008945/1-1121 METFFRRHFQ RKASGPGEGQ RRPGGVGLPT GKARRRSPAG QASSSLVQRR 51 100 ENSBTAP00000018128/1-1101 RSSAQLQGCL LGCGVGAPRP GRRRRSSTAP PACNPRFAVE EVPT-QPQPA ENSP00000412178/1-1117 RSSAQLQGCL LSCGVRAQGS S-RRRSSTVP PSCNPRFIVD KVLT--PQPT ENSTTRP00000015659/1-1118 RSSAQLQGCL LGCGVGAPRS S-RRRSSTAP PACNPRFTVD EVPA--LQPA bmy_04106T0/1-1125 RSSAQLQGCL LGCGVGAPHS S-RRRSSTAP PACNPRFTVD EVPALQLQPA BACU008945/1-1121 RSSAQLQGCL LGCGVGAPRS S-RRRSSTAP PACNPRFTVD EVPALQLQPA 101 150 ENSBTAP00000018128/1-1101 VVGPQLLVAP LLLAGLVGME DEEGLQKEDV RVALPSAAQP GSGTPGPSPP ENSP00000412178/1-1117 TVGAQLLGAP LLLTGLVGMN EEEGVQEDVV AEASS-AIQP GTKTPGPP-- ENSTTRP00000015659/1-1118 TVGALRLGAP LLLAGLLGMD EEEGVQEEDV TVASLAATQP GTKRPGPS-- bmy_04106T0/1-1125 AVGAPRLGAP LLLAGLVGMD EEEGVQEEDV TVASL-ATQP GTKRPGPS-- BACU008945/1-1121 AVGAPCLGAP LLLAGLVGMD EEEGVQEEDV TVASL-ATQP GIKRPGPS-- 151 200 ENSBTAP00000018128/1-1101 PPRSALPLLP VPRWRRRRAS SQLLPADVVK DHGLWGLHGH YRRLSQPRPV ENSP00000412178/1-1117 PPRGAQPLLP LPRY-LRRAS SHLLPADAVY DHALWGLHGY YRRLSQRRPS ENSTTRP00000015659/1-1118 PHRGALPVLP IPRWRRRRAS SHLLPADVVK DRALWGLHGY YRPLSPQRPS bmy_04106T0/1-1125 PHRGALPLLP IPR--RRRAS SHLLPADVVK DRALWGLHGY YRPLSQQRPS BACU008945/1-1121 PHRGALPLLP IPRWRRRRAS SHLLPADVVK DRALWGLHGY YRPLSQQRPS 201 250 ENSBTAP00000018128/1-1101 SQNPTPGGRR ASGTAAGLGM PARVRPLCRR RQVALRRKSA GPQTWSALLA ENSP00000412178/1-1117 GQHPGPGGRR ASGTTAGTML PTRVRPLSRR RQVALRRKAA GPQAWSALLA ENSTTRP00000015659/1-1118 GQHLSLGGRK ASGTAAGPRM PACVRPLSRR RQVALRRKSA GPQTWSALLA bmy_04106T0/1-1125 GQHLSLGGQR ASGTAAGPGM PACVRPLSRR RQVALRRKSA GPQTWSALLA BACU008945/1-1121 GQHLSLGGRR ASGTAAGPGM PACVRPLSRR RQVALRRKSA GPQTWSALLA 251 300 ENSBTAP00000018128/1-1101 KAITKSGLQH LAPPPPAPGA PCSEPERQIR STVDWSESAT YGEHIWFETN ENSP00000412178/1-1117 KAITKSGLQH LAPPPPTPGA PCSESERQIR STVDWSESAT YGEHIWFETN ENSTTRP00000015659/1-1118 KAITKSGLQH LAPPPPAPGA PRSEPERQIR STVDWSESAT YGEHIWFETN bmy_04106T0/1-1125 KAITKSGLQH LAPPPPAPGA PRSEPERQIR STVDWSESAT YGEHIWFETN BACU008945/1-1121 KAITKSGLQH LAPPPPAPGA PRSEPERQIR STVDWSESAT YGEHIWFETN 301 350 ENSBTAP00000018128/1-1101 VSGDFCYVGE QYCVAKMLQK SVSRRKCAAC KIVVHTPCIE QLEKINFRCK ENSP00000412178/1-1117 VSGDFCYVGE QYCVARML-K SVSRRKCAAC KIVVHTPCIE QLEKINFRCK ENSTTRP00000015659/1-1118 VSGDFCYVGE QYCVAKML-K SVSRRKCAAC KIVVHTPCIE QLEKXXXXXX bmy_04106T0/1-1125 VSGDFCYVGE QYCVAXMLQK SVSRRKCAAC KIVVHTPCIE QLEKINFRCK BACU008945/1-1121 VSGDFCYVGE QYCVAKMLQK SVSRRKCAAC KIVVHTPCIE QLEKINFRCK 351 400 ENSBTAP00000018128/1-1101 PSFRESGSRN VREPTFVRHH WVHRRRQDGK CRHCGKGFQQ KFTFHSKEIV ENSP00000412178/1-1117 PSFRESGSRN VREPTFVRHH WVHRRRQDGK CRHCGKGFQQ KFTFHSKEIV ENSTTRP00000015659/1-1118 XXXXXXXXXX XXXPTFVRHH WVHRRRQDGK CRHCGKGFQQ KFTFHSKEIV bmy_04106T0/1-1125 PSFRESGSRN VREPTFVRHH WVHRRRQDGK CRHCGKGFQQ KFTFHSKEIV BACU008945/1-1121 PSFRESGSRN VREPTFVRHH WVHRRRQDGK CRHCGKGFQQ KFTFHSKEIV 401 450 ENSBTAP00000018128/1-1101 AISCSWCKQA YHSKVSCFML QQIEEPCSLG VHAAVVIPPT WILRARRPQN ENSP00000412178/1-1117 AISCSWCKQA YHSKVSCFML QQIEEPCSLG VHAAVVIPPT WILRARRPQN ENSTTRP00000015659/1-1118 AISCSWCKQA YHSKVSCFMM QQIEEPCSLG VHAAVVIPPT WILRARRPQN bmy_04106T0/1-1125 AISCSWCKQA YHSKVSCFML QQIEEPCSLG VHAAVVIPPT WILRARRPQN BACU008945/1-1121 AISCSWCKQA YHSKVSCFML QQIEEPCSLG VHAAVVIPPT WILRARRPQN 451 500 ENSBTAP00000018128/1-1101 TLKASKKKKR ASFKRKSSKK GPEEGRWRPF IIRPTPSPLM KPLLVFVNPK ENSP00000412178/1-1117 TLKASKKKKR ASFKRKSSKK GPEEGRWRPF IIRPTPSPLM KPLLVFVNPK ENSTTRP00000015659/1-1118 TLKASKKKKR ASFKRKSSKK GPEEGRWRPF IIRPTPSPLM KPLLVFVNPK bmy_04106T0/1-1125 TLKASKKKKR ASFKRKSSKK GPEEGRWRPF IIRPTPSPLM KPLLVFVNPK BACU008945/1-1121 TLKASKKKKR ASFKRKSSKK GPEEGRWRPF IIRPTPSPLM KPLLVFVNPK 501 550 ENSBTAP00000018128/1-1101 SGGNQGAKII QSFLWYLNPR QVFDLSQGGP REALEMYRRV HNLRILACGG ENSP00000412178/1-1117 SGGNQGAKII QSFLWYLNPR QVFDLSQGGP KEALEMYRKV HNLRILACGG ENSTTRP00000015659/1-1118 SGGNQGAKII QSFLWYLNPR QVFDLSQGGP KEALEMYRRV HNLRILACGG bmy_04106T0/1-1125 SGGNQGAKII QSFLWYLNPR QVFDLSQGGP KEALEMYRRV HNLRILACGG BACU008945/1-1121 SGGNQGAKII QSFLWYLNPR QVFDLSQGGP KEALEMYRRV HNLRILACGG 551 600 ENSBTAP00000018128/1-1101 DGTVGWILST LDQLRLKPPP PVAILPLGTG NDLARTLNWG GGYTDEPVSK ENSP00000412178/1-1117 DGTVGWILST LDQLRLKPPP PVAILPLGTG NDLARTLNWG GGYTDEPVSK ENSTTRP00000015659/1-1118 DGTVGWILST LDQLRLKPPP PVAILPLGTG NDLARTLNWG GGYTDEPVSK bmy_04106T0/1-1125 DGTVGWILST LDQLRLKPPP PVAILPLGTG NDLARTLNWG GGYTDEPVSK BACU008945/1-1121 DGTVGWILST LDQLRLKPPP PVAILPLGTG NDLARTLNWG GGYTDEPVSK 601 650 ENSBTAP00000018128/1-1101 ILSHVEEGNV VQLDRWDLHA EPNPEAGPEE RDEGATDQLP LDVFNNYFSL ENSP00000412178/1-1117 ILSHVEEGNV VQLDRWDLHA EPNPEAGPED RDEGATDRLP LDVFNNYFSL ENSTTRP00000015659/1-1118 ILSHVEEGNV VQLDRWDLRA EPNPEAGPEE RDEGATDRLP LNVFNNYFSL bmy_04106T0/1-1125 ILSHVEEGNV VQLDRWDLRV EPNPEAGPEE RDEGATDRV- ---------- BACU008945/1-1121 ILSHVEEGNV VQLDRWDLRA EPNPEAGPEE RDEGATDRLP LDVFNNYFSL 651 700 ENSBTAP00000018128/1-1101 GFDAHVTLEF HESREANPEK FNSRFRNKMF YAGTAFSDFL MGSSKDLAKH ENSP00000412178/1-1117 GFDAHVTLEF HESREANPEK FNSRFRNKMF YAGTAFSDFL MGSSKDLAKH ENSTTRP00000015659/1-1118 G-DAHVTLEF HESREANPEK FNSRFRNKMF YAGTAFSDFL MGSSKDLAKH bmy_04106T0/1-1125 ---------- ----EANPEK FNSRFRNKMF YAGTAFSDFL MGSSKDLAKH BACU008945/1-1121 GFDAHVTLEF HESREANPEK FNSRFRNKMF YAGTAFSDFL MGSSKDLAKH 701 750 ENSBTAP00000018128/1-1101 IRVVVSG--L CPQAGWVGPA GGIPPGCICP QPRPPVPACS V-MGLPGKRK ENSP00000412178/1-1117 IRVVCDGMDL TPK------I QDLKPQCVVF LNIPRYCAGT MPWGHPGEHH ENSTTRP00000015659/1-1118 IRVVCDGTDL TPK------I QDLKPQCIVF LNIPRYCAGT MPWGHPGEHH bmy_04106T0/1-1125 IRVVCDGTDL TPK------I QDLKPQCIVF LNIPRYCAGT MPWGHPGEHH BACU008945/1-1121 IRVVCDGTDL TPK------I QDLKPQCIVF LNIPRYCAGT MPWGHPGEHH 751 800 ENSBTAP00000018128/1-1101 ACGPA----G PWPLTLSLPC PQAALQVGGH GERLTQCREV LLTTSKAIPV ENSP00000412178/1-1117 DFEPQRHDDG YLEVIGFTMT SLAALQVGGH GERLTQCREV VLTTSKAIPV ENSTTRP00000015659/1-1118 DFEPQRHDDG YLEVIGFTMT SLAALQVGGH GERLTQCREV LLTTSKAIPV bmy_04106T0/1-1125 DFEPQRHDDG YLEVIGFTMT SLAALQVGGH GERLTQCREV LLTTSKAIPV BACU008945/1-1121 DFEPQRHDDG YLEVIGFTMT SLAALQVGGH GERLTQCREV LLTTSKAIPV 801 850 ENSBTAP00000018128/1-1101 QVDGEPCKLA ASRIRIALRN QATMVQKAKR RSAAPLHSDQ QPVPEQLRVQ ENSP00000412178/1-1117 QVDGEPCKLA ASRIRIALRN QATMVQKAKR RSAAPLHSDQ QPVPEQLRIQ ENSTTRP00000015659/1-1118 QVDGEPCKLA ASCIRISLRN QATMVQKAKR RSAAPLHSDQ QPVPEQLRIQ bmy_04106T0/1-1125 QVDGEPCKLA ASRIRISLRN QATMVQKAKR RSAAPLHSDQ QPVPEQLRIQ BACU008945/1-1121 QVDGEPCKLA ASRIRISLRN QATMVQKAKR RSAAPLHSDQ QPVPEQLRVQ 851 900 ENSBTAP00000018128/1-1101 VSRVSMHDYE ALHYDKEQLK EASVPLGTVV VPGDSDLELC RAHIERLRQE ENSP00000412178/1-1117 VSRVSMHDYE ALHYDKEQLK EASVPLGTVV VPGDSDLELC RAHIERLQQE ENSTTRP00000015659/1-1118 VSRVSMHDYE ALHYDKEQLK EASVPLGTVV VPGDSDLELC RAHIERLRQE bmy_04106T0/1-1125 VSRVSMHDYE ALHYDKEQLK EASVPLGTVV VPGDSDLELC RAHIERLRQE BACU008945/1-1121 VSRVSMHDYE ALHYDKEQLK EASVPLGTVV VPGDSDLELC RAHIERLRQE 901 950 ENSBTAP00000018128/1-1101 PEGAGAKSPM CQKLSPKWCF LDATTASRFY RIDRAQPVTS HVTLSFHVIL ENSP00000412178/1-1117 PDGAGAKSPT CQKLSPKWCF LDATTASRFY RIDRAQEHLN YVT---EIAQ ENSTTRP00000015659/1-1118 PEGAGAKSPT CQKLSPKWCF LDATTASRFY RIDRAQEHLN YVT---EIAQ bmy_04106T0/1-1125 PEDAGAKSPT CQKLSPKWCF LDATTASRFY RIDRAQEHLN YVT---EIAR BACU008945/1-1121 PEDAGATPPT CQKLSPKWCF LDATTASRFY RIDRAQEHLN YVT---EIAQ 951 1000 ENSBTAP00000018128/1-1101 SHPVTLSPQV VVTSH----P VTSSHLVTSP CHISFCRSLP GDAAPPTGEE ENSP00000412178/1-1117 DEIYILDPEL LGASARPDLP TPTSPLPTSP CS-PTPRSLQ GDAAPPQGEE ENSTTRP00000015659/1-1118 DEIYILDPEL LGASARPDLP TPSSPLPTSP CS-PRPRSLP GDAAPPTGEE bmy_04106T0/1-1125 DEIYILDPEL LGASARPDLP TPSSPLPTSP CS-PRPRSLP GDAAPPTGEE BACU008945/1-1121 DEIYILDPEL LGASARPDLP TPSSPLPSSP CS-PRPRSLP GDAAPPTGEE 1001 1050 ENSBTAP00000018128/1-1101 LIEAAKRNDF CKLQELHRAG GDLMHRVERS RTLLHHAVST GSKEVVRYLL ENSP00000412178/1-1117 LIEAAKRNDF CKLQELHRAG GDLMHRDEQS RTLLHHAVST GSKDVVRYLL ENSTTRP00000015659/1-1118 LIEAAKRNDF CKLQELHRAG GDLMHRDERG RTLLHHAVST GSKEVVRYLL bmy_04106T0/1-1125 LIEAAKRNDF CKLQELHRAG GDLMHRDERS RTLLHHAVST GSKEVVRYLL BACU008945/1-1121 LIEAAKRNDF CKLQELHRAG GDLMHRDKRS RTLLHHAVST GSKEVVRYLL 1051 1100 ENSBTAP00000018128/1-1101 EHAPTEILDA VEEK------ ---------- ---------- -----GD--- ENSP00000412178/1-1117 DHAPPEILDA VEEN------ ---------- ---------- -----GETCL ENSTTRP00000015659/1-1118 DHAPTEILDA VEEN------ ---------- ---------- -----GETCL bmy_04106T0/1-1125 DHAPTEILDA VEEKTLNFLP FLMAFGRQEG SEDWMGSTAS PCSPSGETCL BACU008945/1-1121 DHAPTEILDA VEEN------ ---------- ---------- -----GETCL 1101 1150 ENSBTAP00000018128/1-1101 ---------- --------GS SPPRS-HQGD TPRQRAEKAQ DTELAAYLEN ENSP00000412178/1-1117 HQAAALGQRT ICHYIVEAGA SLMKTDQQGD TPRQRAEKAQ DTELAAYLEN ENSTTRP00000015659/1-1118 HQAAALGQRT ICHYIVEAGA SLMKTDQQGD TPRQRAERAQ DTELAAYLEN bmy_04106T0/1-1125 HQAAALGQRT ICHYIVEAGA SLMKTDQQGD TPRQRAEKAQ DTELAAYLEN BACU008945/1-1121 HQAAALGQRT ICHYIVEAGA SLMKTDQQGD TPRQRAEKAQ DTELAAYLEN 1151 1200 ENSBTAP00000018128/1-1101 RQHYQMIQRE DQETAV ENSP00000412178/1-1117 RQHYQMIQRE DQETAV ENSTTRP00000015659/1-1118 RQHYQMIQRE DQETAV bmy_04106T0/1-1125 RQHYQMIQRE DQETAV BACU008945/1-1121 RQHYQMIQRE DQETAV