KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 17:03:47 2014 Check: 00 .. Name: ENSP00000337335/1-542 Len: 588 Check: 1568 Weight: 1.00 Name: ENSBTAP00000018139/1-540 Len: 588 Check: 2731 Weight: 1.00 Name: bmy_20654T0/1-551 Len: 588 Check: 7326 Weight: 1.00 Name: ENSTTRP00000002331/1-559 Len: 588 Check: 3807 Weight: 1.00 // 1 50 ENSP00000337335/1-542 MTFSEILDRV GSMGHFQFLH VAILGLPILN MANHNLLQIF TAATPVHHCR ENSBTAP00000018139/1-540 MTFAELVDRV ASNGPFQFLH TVLLGLPIIG MANHNLLQIF TAATPTHHCR bmy_20654T0/1-551 MTFAELVDRV ASKGPFQFLH TVLLGLPILS MANHNLLQIF TAATPAHHCR ENSTTRP00000002331/1-559 MTFAELVDRV ASKGPFQFLH TVLLGLPILS MANHNLLQIF TAATPAYHCR 51 100 ENSP00000337335/1-542 PPHNASTGPW VLPMGPNGKP ERCLRFVHPP NASLPNDTQR AMEPCLDGWV ENSBTAP00000018139/1-540 PPPNASAGPW ALPMGQNGKP ETCLRFAYPS NASLPNDTQG ATEPCLDGWT bmy_20654T0/1-551 PPPNASAGPW VLPMGLNEKP EPCLRFVYPP NASLPNDTQG ATEPCLDGWT ENSTTRP00000002331/1-559 PPPNASAGPW VLPMGLNEKP EPCLRFVYPP NASLPNDTQG ATEPCLDGWT 101 150 ENSP00000337335/1-542 YN-STKDSIV TEWDLVCNSN KLKEMAQSIF MAGILIGGL- ------VLGD ENSBTAP00000018139/1-540 YDVNSRDSIV AEWDLVCNSK KLKELAQSIF MAGILIGGL- ------VLGA bmy_20654T0/1-551 YDVSTRDSIV TE---VPGGP KSAAGEAENP LSGPPRSSLS SQKSPGFAGH ENSTTRP00000002331/1-559 YDVSTRDSIV TEWDLVCSSN KLKEMAQSIF MAGILIGGL- ------VLGD 151 200 ENSP00000337335/1-542 LSD--RFGRR PILTCSYLLL AASGSGAAFS PTFPIYMVFR FLCGFGISGI ENSBTAP00000018139/1-540 LSDSCRFGRK PILTCSYLLL AASGSGAAFS PTFPTYTVFR FLCGFGISGI bmy_20654T0/1-551 SGP--LFGRK PILTCSYLLL AASGSGAAFS PTLPIYTVFR FLCGCGISGI ENSTTRP00000002331/1-559 LSD--RFGRK PILTCSYLLL AASGSGAAFS PTLPIYTVFR FLCGCGISGI 201 250 ENSP00000337335/1-542 TLSTVILNVE WVPTRMRAIM STALGYCYTF GQFILPGLAY AIPQWRWLQL ENSBTAP00000018139/1-540 TLSTVILNVE WVSTRMRAIK SIAVGYFYTF GQFVLPGLAY VIPQWRWLQL bmy_20654T0/1-551 TLSTTILSVE WVSTRMRAIK SISLGYFYTS GQFILPGLAY AIPQWRWLQL ENSTTRP00000002331/1-559 TLSTTILSVE WVSTRMRAIK SISLGYFYTS GQFILPGLAY AIPQWRWLQL 251 300 ENSP00000337335/1-542 TVSIPFFVFF LSSWWTPESI RWLVLSGKSS KALKILRRVA VFNGK--KEE ENSBTAP00000018139/1-540 TVSIPFFAFF LLSWWLPESI RWMVLSGRSS KALKTLRQVA AFNGK--KEE bmy_20654T0/1-551 TVSIPFFAFF LLSWWLPESI RWMILSGRSS KALKTFRQVA AFNGK--KEE ENSTTRP00000002331/1-559 TVSIPFFAFF LLSWWLPESI RWPVW----- KVLQGPEDIP AGGGLQWQEE 301 350 ENSP00000337335/1-542 GERLSLE--- ---------- ELKLNLQKEI SLAKAKYTAS DLFRIPMLRR ENSBTAP00000018139/1-540 GKKLSLE--- ---------- EIKLNTQKEV ALAKAKRSVA DLFRTPVLRR bmy_20654T0/1-551 GEKLSLELVA NGPLPFLCPK EIKLNLQKEI TLAKAKHSIA DLFRTPILRR ENSTTRP00000002331/1-559 GEALSLE--- ---------- EIKLNLQKEI TLAKAKHSIA DLFRTPILRR 351 400 ENSP00000337335/1-542 MTFCLSLAWF ATGFAYYSLA MGVEEFGVNL YILQIIFGGV DVPAKFITIL ENSBTAP00000018139/1-540 MTFCLSLAWF STGFAYYSLA MGVEEFGVNL YILQLIFGGV DVPAKFITTL bmy_20654T0/1-551 VTFCLSLA-- -------CLA MGVEEFGVNL YVLQLIFGGV DVPAKFITMV ENSTTRP00000002331/1-559 VTFCLSLAWF STGFAYYSLA MGVEEFGVNL YVLQLIFGGV DVPAKFITMV 401 450 ENSP00000337335/1-542 SLSYLGRHTT QAAALLLAGG AILALTFVPL DLQTVRTVLA VFGKGCLSSS ENSBTAP00000018139/1-540 AISYLGRHTT EAALLLLAGG CILSLIFVPA DLMTLRTVLA VFGKGCLSGS bmy_20654T0/1-551 SISYLGRHTT EAVALLLAGG CILSLIFVPS DLLTLRTVLA VFGKGCLSSS ENSTTRP00000002331/1-559 SISYLGRHTT ERRSAP--GR CILSLIFVPS DLLTLRTVLA VFGKGCLSSS 451 500 ENSP00000337335/1-542 FSCLFLYTSE LYPTVIRQTG MGVSNLWTRV GSMVSPLVKI TGEVQPFIPN ENSBTAP00000018139/1-540 FSCLFLFTSE LYPTVTRQTG MGISNMWARV GSMTAPLVKI TAELKPFIPN bmy_20654T0/1-551 FSCLFLYTSE LYPTVIRQTG MGINNLWTRV GSMTAPLVKI TAELKPFIPN ENSTTRP00000002331/1-559 FSCLFLYTSE LYPTVIRQTG MGINNLWTRV GSMTAPLVKI TGELKPFIPN 501 550 ENSP00000337335/1-542 IIYGITALLG GSAALFLPET LN--QPLPET IED------- ---------- ENSBTAP00000018139/1-540 VIFGSIALLG GSAALFLPET LN--RPLPET IED------- ---------- bmy_20654T0/1-551 VIFGTIALLG GSAALFLPET LN--RPLPET VED------- ---------- ENSTTRP00000002331/1-559 VIFGTIALLG GSAALFLPET LNPCQRLLKT KTGQSLFLAP PVLLLGEPGL 551 600 ENSP00000337335/1-542 -LENWSL-RA KKPKQEPEVE KASQRIPLQP HGPGLGSS ENSBTAP00000018139/1-540 -VENWSL-RT KQSKQEPEAE KASQRIPLQP HEP----- bmy_20654T0/1-551 -LENWSL-QA KEPKQEPEAE NASQRIPLQP RELGLGPN ENSTTRP00000002331/1-559 FLSSLSLGQA KEPKQEPEAE NASQRIPLQP CELGLGPN