KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:03:53 2014 Check: 00 .. Name: bmy_20304T0/1-329 Len: 593 Check: 9034 Weight: 1.00 Name: ENSTTRP00000015525/1-380 Len: 593 Check: 5453 Weight: 1.00 Name: ENSP00000331933/1-565 Len: 593 Check: 4252 Weight: 1.00 Name: BACU008365/1-591 Len: 593 Check: 5403 Weight: 1.00 Name: ENSBTAP00000018189/1-564 Len: 593 Check: 2903 Weight: 1.00 // 1 50 bmy_20304T0/1-329 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000015525/1-380 ---------- ---------- -------MAK LWFKFQRYFR RKPVRFFTFL ENSP00000331933/1-565 ---------- ---------- -------MAK LWFKFQRYFR RKPVRFFTFL BACU008365/1-591 MFVKPLNTVV SLCPQRSRND PVRNDPAMAK LWFKFQRYFR RKPVRFFTFL ENSBTAP00000018189/1-564 ---------- ---------- -------MAK LWFKFQRYFR RKPVRFFTFL 51 100 bmy_20304T0/1-329 ---------- ---------- -------MP- ---------- ---------- ENSTTRP00000015525/1-380 VLYLTAGSLV FLHSGFVGQP AVSQNQANP- AAGAPVEGAE LPFLGDLNLG ENSP00000331933/1-565 ALYLTAGSLV FLHSGFVGQP AVSGNQANPA AAGGPAEGAE LSFLGDMHLG BACU008365/1-591 VLYLTAGSLV FLHSGFVGQP AVSQNQANP- AAGAPAEGAE LPFLGDLNLG ENSBTAP00000018189/1-564 VLYLTAGSLV FLHSGFVGQP AVSQNQANP- AAGAPVEGAE LTFLGDLNLG 101 150 bmy_20304T0/1-329 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000015525/1-380 RAFRDTGETS SIARRYGPWF KGKDGNERAK LVDYGGAWSR ALKGRVIREK ENSP00000331933/1-565 RGFRDTGEAS SIARRYGPWF KGKDGNERAK LGDYGGAWSR ALKGRVVREK BACU008365/1-591 RAFRDTGETS SIARRYGPWF KGKDGNERAK LGDYGGAWSR ALKGRVIREK ENSBTAP00000018189/1-564 RGFRDTGEVS SIARRYGPWF KGKDGNERAK LGDYGGAWSR ALKGRVVREK 151 200 bmy_20304T0/1-329 ---------- ---------- ---------N MSVDKCVDLC TEKLSLLGRN ENSTTRP00000015525/1-380 EEERAKYIGC YLDDTQSRAL RGVSFFDYKK MTVFRCQDNC AERGYLYA-G ENSP00000331933/1-565 EEERAKYIGC YLDDTQSRAL RGVSFFDYKK MTIFRCQDNC AERGYLYG-G BACU008365/1-591 EEERAKYIGC YLDDTQSRAL RGVSFFDYKK MTIFRCQDNC AERGYLYA-G ENSBTAP00000018189/1-564 EEERAKYIGC YLDDTQSRAL RGVSFFDYKK MTVFRCQDNC AERGYLYA-G 201 250 bmy_20304T0/1-329 PPPMASPPGG HPSVLRALEE PTGQLEVEDK H--------- ---------- ENSTTRP00000015525/1-380 LEFGAECYCG HKIQATNVSE AECDMDCKGE RGSVCGGANR LSVYRLQLAQ ENSP00000331933/1-565 LEFGAECYCG HKIQATNVSE AECDMECKGE RGSVCGGANR LSVYRLQLAQ BACU008365/1-591 LEFGAECYCG HKIQATNVSE AECDMDCKGE RGSVCGGANR LSVYRLQLAQ ENSBTAP00000018189/1-564 LEFGAECYCG HKIQAANVSE AECDMDCKGE RGSVCGGANR LSVYRLQLAQ 251 300 bmy_20304T0/1-329 ---------- ---------- ---------- ---------- ----KTEYPL ENSTTRP00000015525/1-380 ESARRYGSAV FRGCFRRPDN LSLALPVTAA MPNMSVDKCV DLCTEKXXXX ENSP00000331933/1-565 ESARRYGSAV FRGCFRRPDN LSLALPVTAA MLNMSVDKCV DFCTEKEYPL BACU008365/1-591 EAARRYGSAV FRGCFRRPDN LSLALPVTAA MPNMSVDKCV DLCTEKEYPL ENSBTAP00000018189/1-564 ESARRYGSAV FRGCFRRPDN LSLALPVTAA MPNMSVDKCV DLCTEKEYPL 301 350 bmy_20304T0/1-329 AALAGTACHC GFPTTRFPLH EREDEQLCAQ KCSAEEFESC GTPSYFIVYQ ENSTTRP00000015525/1-380 XXXXXXXXXX XXXXXXXXXX XXXXXQLCAQ KCSAEEFESC GTPSYFIVYQ ENSP00000331933/1-565 AALAGTACHC GFPTTRFPLH DREDEQLCAQ KCSAEEFESC GTPSYFIVYQ BACU008365/1-591 AALAGTACHC GFPTTRFPLH EREDEQLCAQ KCSAEEFESC GTPSYFIVYQ ENSBTAP00000018189/1-564 AALAGTACHC GFPTTRFPLH EREDEQLCAQ KCSAEEFESC GTPSYFIVYQ 351 400 bmy_20304T0/1-329 TQVQ------ ---------- --------GA GNTWARHLIE LATGFYTGSY ENSTTRP00000015525/1-380 TQVQDNRCMD RRFLPAKSKQ LIALASFPGA GNTWARHLIE LATGFYTGSY ENSP00000331933/1-565 TQVQDNRCMD RRFLPGKSKQ LIALASFPGA GNTWARHLIE LATGFYTGSY BACU008365/1-591 TQVQDNRCMD RRFLPAKSKQ LIALASFPGA GNTWARHLIE LATGFYTGSY ENSBTAP00000018189/1-564 TQVQDNRCMD RRFLPAKSKQ LIALASFPGA GNTWARHLIE LATGFYTGSY 401 450 bmy_20304T0/1-329 YFDGSLYNKG FKGERDHWRS GRTICIKTHE SGQKEIEAFD AAILLIRNPY ENSTTRP00000015525/1-380 YFDGSLYNK- ---------- ---------- ---------- ---------- ENSP00000331933/1-565 YFDGSLYNKG FKGERDHWRS GRTICIKTHE SGQKEIEAFD AAILLIRNPY BACU008365/1-591 YFDGSLYNKG FKGERDHWRS GRTICIKTHE SGQKEIEAFD AAILLIRNPY ENSBTAP00000018189/1-564 YFDGSLYNKG FKGERDHWRS GRTICIKTHE SGQKEIEAFE AAILLIRNPY 451 500 bmy_20304T0/1-329 KALMAEFNRK YGGHIGFAAH AHWKGKEWPE FVRNYAPWWA THTLDWLKFG ENSTTRP00000015525/1-380 ---------- ---------- ---------- ---------- ---------- ENSP00000331933/1-565 KALMAEFNRK YGGHIGFAAH AHWKGKEWPE FVRNYAPWWA THTLDWLKFG BACU008365/1-591 KALMAEFNRK YGGHIGFAAH AHWKGKEWPE FVRNYAPWWA THTLDWLKFG ENSBTAP00000018189/1-564 KALMAEFNRK YGGHIGFAAH AHWKGKEWPE FVRNYAPWWA THTLDWLKFG 501 550 bmy_20304T0/1-329 KKVLVVHFED LKQDLFVQLG RMVGLLGVAV REDRLLCVES QKDGNFKRSG ENSTTRP00000015525/1-380 ---------- ---------- ---------- ---------- ---------- ENSP00000331933/1-565 KKVLVVHFED LKQDLFVQLG RMVSLLGVAV REDRLLCVES QKDGNFKRSG BACU008365/1-591 KKVLVVHFED LKQDLFVQLG RMVGLLGVAV REDRLLCVES QKDGNFKRSG ENSBTAP00000018189/1-564 KKVLVVHFED LKRDLFVQLG RMVGLLGVAV REDRLLCVES QKDGNFKRSG 551 600 bmy_20304T0/1-329 LRKLEYDPYT ADMQKTISAY IKTVDAALKG RNLTGVPEDY YPR ENSTTRP00000015525/1-380 ---------- ---------- ---------- ---------- --- ENSP00000331933/1-565 LRKLEYDPYT ADMQKTISAY IKMVDAALKG RNLTGVPDDY YPR BACU008365/1-591 LRKLEYDPYT ADMQKTISAY IKTVDAALKG RNLTGVPKDY YPR ENSBTAP00000018189/1-564 LRKLEYDPYT ADMQRTISAY IKTVDAALRG RNLTGVPDDY YPR