KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:03:54 2014 Check: 00 .. Name: bmy_07388T0/1-711 Len: 1170 Check: 8157 Weight: 1.00 Name: ENSP00000261439/1-1168 Len: 1170 Check: 1987 Weight: 1.00 Name: ENSBTAP00000018206/1-1165 Len: 1170 Check: 5231 Weight: 1.00 Name: BACU007649/1-536 Len: 1170 Check: 7520 Weight: 1.00 Name: ENSTTRP00000007253/1-1161 Len: 1170 Check: 7631 Weight: 1.00 // 1 50 bmy_07388T0/1-711 ---------- ---------- ---------- ------MEVL ELGLEESADA ENSP00000261439/1-1168 MEPITFTARK HLLSNEVSVD FGLQLVGSLP VHSLTTMPML PWVVAEVRRL ENSBTAP00000018206/1-1165 MEPITFTARK HPFPNEVSVD FGLQLVGSLP VHSLTTMPML PWVVAEVRRL BACU007649/1-536 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000007253/1-1161 MEPITFTARK HPFPSEVSVE FSLQLVGFLP VHSLTTMPML PWVVAEVRRL 51 100 bmy_07388T0/1-711 SGESMEEHSR VKAPLLACS- ---------- ---------- -----CQIKG ENSP00000261439/1-1168 SRQSTRKEPV TKQVRLCVSP SGLRCEPEPG RSQQWDPLIY SSIFECKPQR ENSBTAP00000018206/1-1165 SGQSSKKEPG TKPVRLCVSP SGLRCEPEPG KSQQWDPLIC SSIFECKPQR BACU007649/1-536 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000007253/1-1161 SGQSSTKESG TKQVHLCVSP SGLRCEPEPG RSQQWDPLI- SSIFECKPQR 101 150 bmy_07388T0/1-711 NDHLVYTSNH RNNFYL---- ---------- ------KNLV PEIISSIRQA ENSP00000261439/1-1168 VHKLIHNSHD PSYFACLIKE DAVHRQSICY VFKADDQTKV PEIISSIRQA ENSBTAP00000018206/1-1165 VHKLIHNSHD PSYFACLIKN DAANQQSICY VFKADDQTKV PEIISSIRQA BACU007649/1-536 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000007253/1-1161 VHRLIHNSHD PSYFACLIKD DAASQQSICY VFKADGQTKV PEIISSIRQA 151 200 bmy_07388T0/1-711 GKIARQEELR CPSEFDDTFA KKFEVLFCGR VAVAHRKAPP ALIDECIEGF ENSP00000261439/1-1168 GKIARQEELH CPSEFDDTFS KKFEVLFCGR VTVAHKKAPP ALIDECIEKF ENSBTAP00000018206/1-1165 GKIARQEELR CPSEFDDTFA KKFEVLFCGR VAVAHRKAPP ALIDECIEGF BACU007649/1-536 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000007253/1-1161 GKIARQDELR CPSEFDDTFA KKFEVLFCGR VAVAHRKAPP ALIDECIEGF 201 250 bmy_07388T0/1-711 SHVSGG-GFS SSDQLWAARQ PPGDQERDPR PMRKSFSQPG LRSLAFRKEF ENSP00000261439/1-1168 NHVSGSRGSE SPRPNPPHAA PTGSQEPVRR PMRKSFSQPG LRSLAFRKEL ENSBTAP00000018206/1-1165 SHVS-G-GF- SSDQSRSALQ PPGDGERGPR PMRKSFSQPG LRSLAFRKEF BACU007649/1-536 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000007253/1-1161 SHVSGG-GF- SSDQLRAA-- PAGGPGAGPR PMRKSFSQPG LRSLAFRKEF 251 300 bmy_07388T0/1-711 QDAGLRSSSF FSSFEENDIE NHLISGHNIV QPTDIEENRT MLFTIGQSEV ENSP00000261439/1-1168 QDGGLRSSGF FSSFEESDIE NHLISGHNIV QPTDIEENRT MLFTIGQSEV ENSBTAP00000018206/1-1165 QDAGLRSSSF FSSFEESDIE NHLISGHNIV QPTDIEENRT MLFTIGQSEV BACU007649/1-536 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000007253/1-1161 QDAGLRSSSF FSSFEENDIE NHLISGHNIV QPTDIEENRT MLFTIGQSEV 301 350 bmy_07388T0/1-711 YLISPDTKKI ALEKNFKEIS FCSQGIRHVD HFGFICRESS GGGGFHFVCY ENSP00000261439/1-1168 YLISPDTKKI ALEKNFKEIS FCSQGIRHVD HFGFICRESS GGGGFHFVCY ENSBTAP00000018206/1-1165 YLISPDTKKI ALQKNFKEIS FCSQGIRHVD HFGFICRESS GGGGFHFVCY BACU007649/1-536 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000007253/1-1161 YLISPDTKKI ALEKNFKEIS FCSQGIRHVD HFGFICRESS GGGGFHFVCY 351 400 bmy_07388T0/1-711 VFQCTNEALV R--------- ---------- ---------- ---------- ENSP00000261439/1-1168 VFQCTNEALV DEIMMTLKQA FTVAAVQQTA KAPAQLCEGC PLQSLHKLCE ENSBTAP00000018206/1-1165 VFQCTNEALV DEIMMTLKQA FTVAAVQQTA KAPAQLCEGC PLQGLHKLCE BACU007649/1-536 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000007253/1-1161 VFQCTNEALX XXXXXXXXXX XXVAAVQQTA KATAQLCEGC PLQGLHKLCE 401 450 bmy_07388T0/1-711 ----MNSSKT KLELQKHLTT LTNQEQATIF EEVQKLRPRN EQRENELIVS ENSP00000261439/1-1168 RIEGMNSSKT KLELQKHLTT LTNQEQATIF EEVQKLRPRN EQRENELIIS ENSBTAP00000018206/1-1165 RIEGMNSSKT KLELQKHLTT LTNQEQATIF EEVQKLRPRN EQRENELIIS BACU007649/1-536 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000007253/1-1161 RIEGMNSSKT KLELQKHLTT LTNQEQATIF EEVQKLRPRN EQRENELIVS 451 500 bmy_07388T0/1-711 FLRCLYEEKQ KVHVHVGEIK QTSQIAAENI ASELPSSATR FRLDMLKNKA ENSP00000261439/1-1168 FLRCLYEEKQ KEHIHIGEMK QTSQMAAENI GSELPPSATR FRLDMLKNKA ENSBTAP00000018206/1-1165 FLRCLYEEKQ KVHIHIGEIK QTSQIAAENI GSELPSSATR FRLDMLKNKA BACU007649/1-536 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000007253/1-1161 FLRCLYEEKQ KVHVHIGEIK QASQIAAENT GSELPSSATR FRLDMLKNKA 501 550 bmy_07388T0/1-711 KRSLTESLES ILSRGNKARG LQEHSASLDL DSSVSSTLSN TSKEPSVCEK ENSP00000261439/1-1168 KRSLTESLES ILSRGNKARG LQEHSISVDL DSSLSSTLSN TSKEPSVCEK ENSBTAP00000018206/1-1165 KRSLTESLES ILSRGNKARG LQEHSASLDL DSSVSSMFSN TSKEPSGYEK BACU007649/1-536 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000007253/1-1161 KRSLTESLES ILSRGNKARG LQEHSASLDL DSSVSSTLSN TSKEPSVCEK 551 600 bmy_07388T0/1-711 EALPISESSF RLLGSSDDLS SDSESHPAEE PALLSPQQGF RRRANTLSHV ENSP00000261439/1-1168 EALPISESSF KLLGSSEDLS SDSESHLPEE PAPLSPQQAF RRRANTLSHF ENSBTAP00000018206/1-1165 EALPISESCF RLLGSSDDLS SDSESQLTEE PALLSPKQGF RRRANTLSHV BACU007649/1-536 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000007253/1-1161 EAFPISESSF RLLGSSDDLS SDSESHAAEE PALLSPQQGF RRRANTLSHI 601 650 bmy_07388T0/1-711 PVERQEPLQP ARGSPGVSQR KLVRYHSVST ETPHER---N GNHPPVGESK ENSP00000261439/1-1168 PIECQEPPQP ARGSPGVSQR KLMRYHSVST ETPHERKDFE SKANHLGDSG ENSBTAP00000018206/1-1165 PVECQEPPQL VRGSPGVSQR KLVRYHSVST ETPHERKDFE SKADHISDAS BACU007649/1-536 ---------- ---------- ---------- --MNTKRDFE SKASHLGDAS ENSTTRP00000007253/1-1161 PVECQQPLQQ AQGSPGVSQR KLVRYHSVST ETPHERKDFE SKASHLGDAS 651 700 bmy_07388T0/1-711 SDSGQSSAPA PPPRL----- TPSASSPNFF KYLKHYPSGE QSGNAVPKSI ENSP00000261439/1-1168 GTPVKTRRHS WRQQIFLRVA TPQKACDSSS RYEDYSELGE LPPRSPLEPV ENSBTAP00000018206/1-1165 RTPVKTRRHS WRQQIFLRVA TPQKACESPK RYEDYSELGE LPPRSPLEPV BACU007649/1-536 GTPVKTRRHS WRQQIFLRVA TPQKACDSPG RHEDYSELGE LPPRSPLEPV ENSTTRP00000007253/1-1161 GTPVKTRRHS WRQQIFLRVA TPQKACDSPG RHEDYSELGE LPPRSPLEPV 701 750 bmy_07388T0/1-711 S----YRNAL RKKLHSSSSV PNFLK----- --FLAPVDEN NT------SD ENSP00000261439/1-1168 CEDGPFGPPP EEKKRTSREL RELWQKAILQ QILLLRMEKE NQKLQASEND ENSBTAP00000018206/1-1165 CEDGPFGPVP EEKKRTSHEL RELWQKAILQ QILLLRMEKE NQKLQASEND BACU007649/1-536 CEDGPFGPVP EEKKRTSREL RELWQKAILQ QILLLRMEKE NQKLQASEND ENSTTRP00000007253/1-1161 CEDGPFGPVP EEKKRTSREL RELWQKAILQ QILLLRMEKE NQKLQASEND 751 800 bmy_07388T0/1-711 FMNTK-SLKH ADVKTVI--- ---------- -----ISKDF ESKASHLGDA ENSP00000261439/1-1168 LLNKRLKLDY EEITPCLKEV TTVWEKMLST PGRSKIKFDM EKMHSAVGQ- ENSBTAP00000018206/1-1165 LLNKRLKLDY EEITPCLKEV TTVWEKILST PGRSKIKFDM EKMHSAVGQ- BACU007649/1-536 LLNKRLKLDY EEITPCLKEV TTVWEKMLTT PGRSKIKFDM EKMHSAVGQ- ENSTTRP00000007253/1-1161 LLN-RLKLDY EEITPCL-EV TTVWEKMLTT PGRSKIKFDM EKMHSAVGQ- 801 850 bmy_07388T0/1-711 SGTPVKTRRH SWR---QQIF LRVATP--QK ACESP----- -----GRHEV ENSP00000261439/1-1168 -GVPRHHRGE IWKFLAEQFH LKHQFPSKQQ PKDVPYKELL KQLTSQQHAI ENSBTAP00000018206/1-1165 -GVPRHHRGE IWKFLAEQYH LKHPFPCKQQ PKDTPYKELL KQLTSQQHAI BACU007649/1-536 -GVPRHHRGE IWKFLAEQYH LKHPFPSKQQ PKDTPYKELL KQLTSQQHAI ENSTTRP00000007253/1-1161 -GVPRHHRGE IWKFLAEQYH LKHPFPSKQQ PKDTPYKELL KQLTSHQHAI 851 900 bmy_07388T0/1-711 FLNQKTFFP- ---------- ---------- ---------- ---------- ENSP00000261439/1-1168 LIDLGRTFPT HPYFSAQLGA GQLSLYNILK AYSLLDQEVG YCQGLSFVAG ENSBTAP00000018206/1-1165 LIDLGRTFPT HPYYSAQLGA GQLSLYNILK AYSLLDQEVG YCQGLSFVAG BACU007649/1-536 LIDLGRTFPT HPYFSAQLGA GQLSLYNILK AYSLLDQEVG YCQGLSFVAG ENSTTRP00000007253/1-1161 LIDLGRTFPT HPYFSAQLGA GQLSLYNILK AYSLLDQEVG YCQGLSFVAG 901 950 bmy_07388T0/1-711 ---------- ---------- -------YK- ---------- ---------- ENSP00000261439/1-1168 ILLLHMSEEE AFKMLKFLMF DMGLRKQYRP DMIILQIQMY QLSRLLHDYH ENSBTAP00000018206/1-1165 ILLLHMGEEE AFNMLKFLMF DMGLRKQYRP DMIILQIQMY QLSRLLHDYH BACU007649/1-536 ILLLHMGEEE AFNMLKFLMF DMGLRKQYRP DMIILQIQMY QLSRLLHDYH ENSTTRP00000007253/1-1161 ILLLHMGEEE AFNMLKFLMF DMGLRKQYRP DMIILQIQMY QLSRLLHDYH 951 1000 bmy_07388T0/1-711 ---------- ---------- ---------- ---------- ---------- ENSP00000261439/1-1168 RDLYNHLEEH EIGPSLYAAP WFLTMFASQF PLGFVARVFD MIFLQGTEVI ENSBTAP00000018206/1-1165 RDLYNHLEEH EIGPSLYAAP WFLTVFASQF PLGFVARVFD MIFLQGSEVI BACU007649/1-536 RDLYNHLEEH EIGPSLYAAP WFLTVFASQF PLGFVARVFD MIFLQGSEVI ENSTTRP00000007253/1-1161 RDLYNHLEEH EIGPSLYAAP WFLTVFASQF PLGFVARVFD MIFLQGSEVI 1001 1050 bmy_07388T0/1-711 ---------- ---------- ---------- ---------- ---------- ENSP00000261439/1-1168 FKVALSLLGS HKPLILQHEN LETIVDFIKS TLPNLGLVQM EKTINQVFEM ENSBTAP00000018206/1-1165 FKVALSLLGS HKPLILQHEN LETIVDFIKS TLPNLGLVQM EKTISQVFET BACU007649/1-536 FKVALSLLGS HKPLILQHEN LETIVDFIKS TLPNLGLVQM EKTISQVFVM ENSTTRP00000007253/1-1161 FKVALSLLGS HKPLILQHEN LETIVDFIKS TLPNLGLVQM EKTISQVFVM 1051 1100 bmy_07388T0/1-711 ---------- ---------- ---------- ---------S TAKQTSKDYL ENSP00000261439/1-1168 DIAKQLQAYE VEYHVLQEEL IDSSPLSDNQ RMDKLEKTNS SLRKQNLDLL ENSBTAP00000018206/1-1165 DISKQLQAYE VEYHVLQEEL IDSSPLSDNQ RMDKLEKTNS SLRKQNLDLL BACU007649/1-536 DISKQLQAYE VEYHVLQEEL IDSSPLSDNQ RMDRLEKTNS SLRKQNLDLL ENSTTRP00000007253/1-1161 DISKQLQAYE VEYHVLQEEL IDPSPLSDNQ RMDRLEKTNS SLRKQNLDLL 1101 1150 bmy_07388T0/1-711 NSSDCKTA-- ----CSGDSL LSLDTLLHVS ---------- ---------- ENSP00000261439/1-1168 EQLQVANGRI QSLEATIEKL LSSESKLKQA MLTLELERSA LLQTVEELRR ENSBTAP00000018206/1-1165 EQLQVANGRI QSLEATVEKL LTSESKLKQA TLALELERSA LLQTVEQLRR BACU007649/1-536 EQLQVANGRI QSLEATIEKL LTSESKLKQA TLALELERSA LLQTVERLQG ENSTTRP00000007253/1-1161 EQLQVANGRI QSLEATIEKL LTSESKLKQA TLALELERSA LLQTVERLQG 1151 1200 bmy_07388T0/1-711 ---------- ---------- ENSP00000261439/1-1168 RSAEPSDREP ECTQPEPTGD ENSBTAP00000018206/1-1165 QTAELGSQES DPTLPKPSGD BACU007649/1-536 QTAELGGPEP GPAPPEPAGR ENSTTRP00000007253/1-1161 QTAELGGPEP DPVPPEPAGH