KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:04:00 2014 Check: 00 .. Name: ENSP00000426809/1-865 Len: 890 Check: 9799 Weight: 1.00 Name: ENSBTAP00000018252/1-879 Len: 890 Check: 6265 Weight: 1.00 Name: ENSTTRP00000002384/1-845 Len: 890 Check: 6588 Weight: 1.00 Name: bmy_22189T0/1-522 Len: 890 Check: 9759 Weight: 1.00 Name: BACU001733/1-836 Len: 890 Check: 7170 Weight: 1.00 // 1 50 ENSP00000426809/1-865 MALVLGSLLL LGLCGNSFSG GQPSSTD-AP KAWNYELPAT NYETQDSHKA ENSBTAP00000018252/1-879 MALLLGFLLL LGLCEDTLSE -ELSSSGYRP DGLEFQLPPT SYQTSDSYDP ENSTTRP00000002384/1-845 MALLLRFLLL LGLYGDTMSE GPPPSSAYIA EVWN-EFPPT SYETRDSYEA bmy_22189T0/1-522 ---------- ---------- ---------- ---------- ---------- BACU001733/1-836 MALLLGFLLL LGLHGDTMSE GPPPSSTYIP DGLEFEFPPT NYETKDSYEA 51 100 ENSP00000426809/1-865 GPIGILFELV HIFLYVVQPR DFPEDTLRKF LQKAYESKID YDKPETVILG ENSBTAP00000018252/1-879 GLAGFFFQIV RFFVQIVQPN AFPEDILRKI IQKKFDLSKE YDKPENVVLT ENSTTRP00000002384/1-845 GPTGILFQIV HIFLHMVQPN AFPEDILRKV VQKEFDLSTD YEKPE-VVLI bmy_22189T0/1-522 ---------- ---------- ---------- ---------- ---------- BACU001733/1-836 GPTGIFFQIV HIFLHMVQPN AFPEDILRKV VQKKFDLSTD YE-------- 101 150 ENSP00000426809/1-865 LKIVYYEAGI ILCCVLGLLF IILMPLVGYF FCMCRCCNKC GGEMHQRQKE ENSBTAP00000018252/1-879 LKIIYYEIGI IICAALGLLF VILMPLVGFF FCLCRCCNKC GGEMHQRQKK ENSTTRP00000002384/1-845 LKIIYYEIGI IICAVLGLLF IILMPLVGFV FSLCRCCNKC GGEMHQRQKK bmy_22189T0/1-522 ---------- ---------- ---------- ---------- ---------- BACU001733/1-836 -KIIYYEIGI ITCAVLGLLF IILMPLVGFV FSLCRCCNKC GGEMHQRQKK 151 200 ENSP00000426809/1-865 NGPFLRKCFA ISLLVICIII SIGIFYGFVA NHQVRTRIKR SRKLADSNFK ENSBTAP00000018252/1-879 SGPFLKKYFT ISLLVICVFI SIGIIYGFAA NHYMRTNVEE TRKLSESNLN ENSTTRP00000002384/1-845 NGAALKSYFT LSLLVICIFI SFGIIYGFVA NQHIRTHIEK TRKLSESNFN bmy_22189T0/1-522 ---------- ---------- ---------- ---------- ---------- BACU001733/1-836 NGAALKNYFT LSLLVICIFI SIGIIYGFVA NQHIRTHVEK TRKLSESNFN 201 250 ENSP00000426809/1-865 DLRTLLNETP EQIKYILAQY NTTKDKAFTD LNSINSVLGG GILDRLRPNI ENSBTAP00000018252/1-879 DLRTLLNVVP GQIDYILDQF TLPKEKAFDD LDNINLLVGG SIYERLKPKV ENSTTRP00000002384/1-845 DLRTLLNATP GXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_22189T0/1-522 ---------- ---------- ---------- ---------- ---------- BACU001733/1-836 DLRTLLNATP GQIDYVLDQY TTTKARAFSD LDNIKLLLGG GIFEHLKPRV 251 300 ENSP00000426809/1-865 IPVLDEIKSM ATAIKETKEA LENMNSTLKS LHQQSTQLSS SLTSVKTSLR ENSBTAP00000018252/1-879 LPVLKDIKDL AEDMKTNRDT LVRMNTVLTD MKQSSAQLRT SLRDVKTNME ENSTTRP00000002384/1-845 XXXXXXXXXX XXXIQETRET LVEVNSILTD MRQLSANLSN SLSNVKGNL- bmy_22189T0/1-522 ---------- ---------- ---------- MRQLSANLSN SLSNVKRNLE BACU001733/1-836 VPVLDDIKAM AEEIQETRET LVEVNSILTD MRHLSANLSN SLSNVKRNLE 301 350 ENSP00000426809/1-865 SSLNDPLCLV HPSSETCNSI RLSLSQLNSN PELRQLPPVD AELDNVNNVL ENSBTAP00000018252/1-879 QTLMDPQCSS PAAAPTCDSI RKSLSVLDGS ANFDHLPSLD GHITQLDGLL ENSTTRP00000002384/1-845 QALTDPMCSV HPVMTTCSNI RLS-SLLDGS IDL--LPSLD EQIGNLNDIL bmy_22189T0/1-522 QALNDPMCSV HPVMTTCSNI MNSLSLLDGS IDFD------ ---------- BACU001733/1-836 QALNDPMCSV HPVMTTCSNI MNSLRLLDGS IDFDQLPSLD EQIGNLNDIL 351 400 ENSP00000426809/1-865 RTDLDGLVQQ GYQSLNDIPD RVQRQTTTVV AGIKRVLNSI GSDIDNVTQR ENSBTAP00000018252/1-879 QTDLSGLVQK ANESLSNIPE EVQNQTRDFI SEFKKTLNSL QSDVKNISTK ENSTTRP00000002384/1-845 -TNLSSLVQK GYRSFNAIPG IVQNETVNVV SDVKMTLDSI GSDIKNISKN bmy_22189T0/1-522 ---------Q GYKSFNAIPG IVQNETVNVV SDVKMTLDSI GSDIKNISKN BACU001733/1-836 QTNLSSLVQK GYKSFNAIPG IVQNETVHVV SDVKMTLDSI GSDIKNISKN 401 450 ENSP00000426809/1-865 LPIQDILSAF SVYVNNTESY IHRNLPTLEE YDSYWWLGGL VICSLLTLIV ENSBTAP00000018252/1-879 IPIQKTLSNF VRYINDSEDY ILQYLPTMEE CDSYRWLVCL VICCLLTLIL ENSTTRP00000002384/1-845 IPIQDKLSNF IRYLNDTENY IHRHLPTLEE YDSYRWLGSL VVCCLLTLIV bmy_22189T0/1-522 IPIQDKLSNF IRYLNDTENY IHRHLPTLEE YDSYRWLGSL VVCCLLTLIV BACU001733/1-836 IPIQDKLSNF IRYLNDTENY IHRHLPTLEE YDSYRWLGSL VVCCLLTLIV 451 500 ENSP00000426809/1-865 IFYYLGLLCG VCGYDRHATP TTRGCVSNTG GVFLMVGVGL SFLFCWILMI ENSBTAP00000018252/1-879 IFYLLGLLCG TLGYDQKATP TRRGCVSNTG GLLLMVGVGL SFFFSWIIMT ENSTTRP00000002384/1-845 IFYFLGLLCG TYGYNQNATP TRRGCVSNTG GIFLMVGVGF SFFFCWLLMT bmy_22189T0/1-522 IFYCLGLLCG TYGYNQNATP TRRGCVSNTG GIFLMVGVGF SFFFCWLLMT BACU001733/1-836 IFYCLGLLCG TYGYNQNATP TRRGCVSNTG GIFLMVGVGF SFFFCWLLMT 501 550 ENSP00000426809/1-865 IVVLTFVFGA NVEKLICEPY TSKELFRVLD TPYLLNEDWE YYLSGKLFNK ENSBTAP00000018252/1-879 IVVLTFVTGG NMEKLVCEPY RNKKLFQVLD TPYLLNEDWK YYLSGLVFNK ENSTTRP00000002384/1-845 IVVLTFVVGG NVEKLVCEPY QNKMLFQVLD TPYLLNADWK YYLSGMVFNK bmy_22189T0/1-522 IVVLTFVVGG NVEKLVCEPY QNKKLFQVLD TPYLLNADWK YYLSGMVFNK BACU001733/1-836 IVVLTFVVGG NVEKLVCEPY QNKKLFQVLD TPYLLNADWK YYLSGMVFNK 551 600 ENSP00000426809/1-865 SKMKLTFEQV YSDCKKNRGT YGTLHLQNSF NISEHLNINE HTGSISSELE ENSBTAP00000018252/1-879 PDINLTFEQV YSDCKENKGL YATLKLDHIY NVSEQLNITK HTGDINSNLE ENSTTRP00000002384/1-845 PDIHLTFEQV YSDCKENKGI YATLKLENTY NISEHLSIKE HTGNINNNFE bmy_22189T0/1-522 PDIHLTFEQV YRSNYRGK-- ---------- ------SRGE HTGNINNNFE BACU001733/1-836 PDIHLTFEQV YSDCKENKGI YATLKLENTY NISEFLSIKE HTGNINNNFE 601 650 ENSP00000426809/1-865 SLKVNL-NIF LLGAAGRKNL QDFAACGIDR MNYDSYLAQT GKSPAGVNLL ENSBTAP00000018252/1-879 NMNIRIEDIE LLDKTGMKTL MDLRSSGIDD IDYAAYLNAT ERSPTRVNLI ENSTTRP00000002384/1-845 NMNIRIDNIV LLDEAGRRNL MDFSSSGIDK IDYGAFMAAT GKNPTKVNLL bmy_22189T0/1-522 NMNIXIDNIV LLDEAGRRNL MDFSSSGIDK IDYGAFMAAT GKNPTKVNLL BACU001733/1-836 NMNIRIDNIV LLDEAGKRNL MDFSSSGIDK IDYGAFMAAT GKNPTKVNLL 651 700 ENSP00000426809/1-865 SFAYDLEAKA NSLPPGNLRN SLKRDAQTIK TIHQQRVLPI EQSLSTLYQS ENSBTAP00000018252/1-879 SFANNLRRKA NQLPSGNLKT SLKSHTDTLT NIHENQVVPL QNSMNAMHQQ ENSTTRP00000002384/1-845 SFANDLEVKA NHLPPGNLKQ TLKNNAGILR NIHRDEIIPL QKLMSAVHQK bmy_22189T0/1-522 SFANDLEVKA NHLPQGNLKQ TLKNNAGILR NIHRDEIIPL QKLMSAVHQK BACU001733/1-836 SFANDLEVKA NHLPQGNLKQ TLKNNAGILR NIHRDEIIPL QKLMSAVHQK 701 750 ENSP00000426809/1-865 VKILQRTGNG LLERVTRILA SLDFAQNFIT NNTSSVIIEE TKKYGRTIIG ENSBTAP00000018252/1-879 MKGLQYRTSG LKVRVSTTIF FLNSTQDFLT SQLSEVVVEE SKQFGNKIIS ENSTTRP00000002384/1-845 LKELQQKSSG LGVKVANIIR FLDSAQDFIT NRISTIIAEE SKKYGNTIIS bmy_22189T0/1-522 LKELQQKSSG LGVKVANIIL FLDAAQDFIT NRISTIIAEE SKKYGNSIMS BACU001733/1-836 LKELQQKSSG LGVKVANIIL VLDSAQDLIT NQISTIIAEE SKKYGNSIMS 751 800 ENSP00000426809/1-865 YFEHYLQWIE FSISEKVASC KPVATALDTA VDVFLCSYII DPLNLFWFGI ENSBTAP00000018252/1-879 YFERYLQWVE MAITQQFAAC KPAATALDSA VNVFLCSYIV DPLNLFWFGV ENSTTRP00000002384/1-845 YFEHYLQWVK ISITEQMAAC KPVATALDSA IDVFLCSYII DPLNLFWFGI bmy_22189T0/1-522 YFEHYLQWVK ISITEQMAAC KPVATALDSA IDVFLCSYII DPLNLFWFGI BACU001733/1-836 YFERYLQWVK ISITEQMAAC KPVATALDSA IDVFLCSYII DPLNLFWFGI 801 850 ENSP00000426809/1-865 GKATVFLLPA LIFAVKLAKY YRRMDSEDVY DD-------- ---------- ENSBTAP00000018252/1-879 GKATILLLPA VIFAVKLAKY FRRMYSEDVY EDEPVNKVQS KPRAQTVPRV ENSTTRP00000002384/1-845 GKATAFLLPA IIFAVKLAKY YRRMDSEDVY DDD------- ---------- bmy_22189T0/1-522 GKATAFLLPA IIFAVKLAKY YRRMDSEDVY DDD------- ---------- BACU001733/1-836 GKATAFLLPA IIFAVKLAKY YRRMDSEDVY DDD------- ---------- 851 900 ENSP00000426809/1-865 -----VETIP MKNMENGNNG YHKDHVYGIH NPVMTSPSQH ENSBTAP00000018252/1-879 QTVPMVQTVP MTNMRHANTR SRVEQGTQTI ---------- ENSTTRP00000002384/1-845 -----VETIP MKNMENANIG SRRH------ ---------- bmy_22189T0/1-522 -----VETIP MKKYGKC--- ---------- ---------- BACU001733/1-836 -----VETIP MKKYGKC--- ---------- ----------