KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:04:12 2014 Check: 00 .. Name: ENSP00000382423/1-1512 Len: 1524 Check: 8837 Weight: 1.00 Name: ENSBTAP00000018325/1-1509 Len: 1524 Check: 7514 Weight: 1.00 Name: bmy_15521T0/1-1413 Len: 1524 Check: 6652 Weight: 1.00 Name: ENSTTRP00000010643/1-1469 Len: 1524 Check: 7166 Weight: 1.00 Name: BACU016761/1-1251 Len: 1524 Check: 9774 Weight: 1.00 // 1 50 ENSP00000382423/1-1512 ------MAAA AGNRASSSGF PGARATSPEA GGGGGALKAS SAPAAAAGLL ENSBTAP00000018325/1-1509 ------MAAA AGNRASSSGF PGAGAASPEA GGGRGALKAS SAPAAAAGLL bmy_15521T0/1-1413 MGSGNIPDTQ PNDLSQNHLY QSEKQEYKHQ GETKLLHQSQ KMYLPKDAIL ENSTTRP00000010643/1-1469 ------MAAA AENRASSSGF PGARAASPE- GRGXXXXXXX XXXXXXXXXX BACU016761/1-1251 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000382423/1-1512 REAGSGGRER ADWRRRQLRK VRSVELDQLP EQPLFLAASP PASSTSPSPE ENSBTAP00000018325/1-1509 REAGSGGRER ADWRRRQLRK VRSVELDQLP EPPLFLAASP PSSSTSPSPE bmy_15521T0/1-1413 TPPPEYAFLE SLWSGFHIRP VKKIAFKDFP ---------- --SSQTRRPS ENSTTRP00000010643/1-1469 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX BACU016761/1-1251 ---------- ---------- ---------- ---------- ---------- 101 150 ENSP00000382423/1-1512 PADAAGSGTG FQPVAVPPPH GAASRGGAHL TESVAAPDSG ASSPAAAEPG ENSBTAP00000018325/1-1509 PPDAAAGGSG FQPVAVPPPH GAASRGGAHP AEPAAAPDSG AQSPAGAEPG bmy_15521T0/1-1413 QPAFPQRLRG LALHIA---- ------SMQP LDLVLLPHMD HFNLFKVEQC ENSTTRP00000010643/1-1469 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX TEPAAAPDSG APSPAGAEPG BACU016761/1-1251 ---------- ---------- ---------- ---------- ---------- 151 200 ENSP00000382423/1-1512 EKRAPAAEPS PAAAPAG--- REMENKETLK GLHKMDDRPE ERMIREKLKA ENSBTAP00000018325/1-1509 EKRTPAAEPT -AAAPAG--- REMENKETLK GLHKMDDRPE ERMIREKLKA bmy_15521T0/1-1413 RPLSNPCNLG PILNPRTEFR REMENKETLK GLHKMDDRPE ERMIREKLKA ENSTTRP00000010643/1-1469 EKRTPAAEPP LAAAPAG--- REMENKETLK GLHKMDDRPE ERMIREKLKA BACU016761/1-1251 ---------- ---------- REMENKETLK GLHKMDDRPE ERMIREKLKA 201 250 ENSP00000382423/1-1512 TCMPAWKHEW LERRNRRGPV VVKPIPVKGD GSEMNHLAAE SPGEVQASAA ENSBTAP00000018325/1-1509 TCMPAWKHEW LERRNRRGPV VVKPIPIKGD GSEINNLAAE SQGEGPTSAA bmy_15521T0/1-1413 TCMPAWKHEW LERRNRRGPV VVKPIPIKGD GSEINTLAAE SQGEGQASAA ENSTTRP00000010643/1-1469 TCMPAWKHEW LERRNRRGPV VVKPIPIKGD GSEINTLAAE SQGEGHASAA BACU016761/1-1251 TCMPAWKHEW LERRNRRGPV VVKPIPIKGD GSEINTLAAE SQGEGQASAA 251 300 ENSP00000382423/1-1512 SPASKGRRSP SPGNSPSGRT VKSESPGVRR KRVSPVPFQS GRITPPRRAP ENSBTAP00000018325/1-1509 SSTPKGRRSP SPGSSPSGRT VKSESPGVRR KRVSPVPFQS GRITPPRRAP bmy_15521T0/1-1413 SSAPKGRRSP SPGSSPSGRT VKSESPGVRR KKVSPVP--- ---------- ENSTTRP00000010643/1-1469 SSAPKGRRSP SPGSSPSGRT VKSESPGVRR KKVSPVPFQS GRITPPRRAP BACU016761/1-1251 SSAPKGRRSP SPGSSPSGRT VKSESPGVRR KKVSPVPFQS GRITPPRRAP 301 350 ENSP00000382423/1-1512 SPDGFSPYSP EETNRRVNKV MRARLYLLQQ IGPNSFLIGG DSPDNKYRVF ENSBTAP00000018325/1-1509 SPDGFSPYSP EETNRRVNKV MRARLYLLQQ IGPNSFLIGG DSPDNKYRVF bmy_15521T0/1-1413 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000010643/1-1469 SPDGFSPYSP EETNRRVNKV MRARLYLLQQ IGPNSFLIGG DSPDNKYRVF BACU016761/1-1251 SPDGFSPYSP EETNRRVNKV MRARLYLLQQ IGPNSFLIGG DSPDNKYRVF 351 400 ENSP00000382423/1-1512 IGPQNCSCAR GTFCIHLLFV MLRVFQLEPS DPMLWRKTLK NFEVESLFQK ENSBTAP00000018325/1-1509 IGPQNCSCGR GTFCIHLLFV MLRVFQLEPS DPMLWRKTLK NFEVESLFQK bmy_15521T0/1-1413 ----NCSCGR GTFCIHLLFV MLRVFQLEPS DPMLWRKTLK NFEVESLFQK ENSTTRP00000010643/1-1469 IGPQNCSCGR GTFCIHLLFV MLRVFQLEPS DPMLWRKTLK NFEVESLFQK BACU016761/1-1251 IGPQNCSCGR GTFCIHLLFV MLRVFQLEPS DPMLWRKTLK NFEVESLFQK 401 450 ENSP00000382423/1-1512 YHSRRSSRIK APSRNTIQKF VSRMSNSHTL SSSSTSTSSS ENSIKDEEEQ ENSBTAP00000018325/1-1509 YHSRRSSRIK APSRNTIQKF VSRMSNSHTL SSSSTSTSSS ENSIKDEEEQ bmy_15521T0/1-1413 YHSRRSSRIK APSRNTIQKF VSRMSNSHTL SSSSTSTSSS ENSIKDEEEQ ENSTTRP00000010643/1-1469 YHSRRSSRIK APSRNTIQKF VSRMSNSHTL SSSSTSTSSS ENSIKDEEEQ BACU016761/1-1251 YHSRRSSRIK APSRNTIQKF VSRMSNSHTL SSSSTSTSSS ENSIKDEEEQ 451 500 ENSP00000382423/1-1512 MCPICLLGML DEESLTVCED GCRNKLHHHC MSIWAEECRR NREPLICPLC ENSBTAP00000018325/1-1509 MCPICLLGML DEESLTVCED GCRNKLHHHC MSIWAEECRR NREPLICPLC bmy_15521T0/1-1413 MCPICLLGML DEESLTVCED GCRNKLHHHC MSIWAEECRR NREPLICPLC ENSTTRP00000010643/1-1469 MCPICLLGML DEESXT---- ---------- -SIWAEECRR NREPLICPLC BACU016761/1-1251 MCPICLLGML DEESLTVCED GCRNKLHHHC MSIWAEECRR NREPLICPLC 501 550 ENSP00000382423/1-1512 RSKWRSHDFY SHELSSPVDS PSSLRAAQQQ TVQQQPLAGS -RRNQESNFN ENSBTAP00000018325/1-1509 RSKWRSHDFY SHELSSPVDS PSPLRAPQQQ TTQQHALAGS QRRNQEGSLT bmy_15521T0/1-1413 RSKWRSHDFY SHELSSPVDS PSSLRAAQQQ TTQQHPLAGS QRRNQESNFN ENSTTRP00000010643/1-1469 RSKWRSHDFY SHELSSPVDS PSSLRAAQQQ TTQQHPLAGS QRRNQESNFN BACU016761/1-1251 RSKWRSHDFY SHELPSPVDS PPSLRAAQQQ TTQQHPLAGS QRRNQESNFN 551 600 ENSP00000382423/1-1512 LTHYGTQQIP PAYKDLAEPW IQVFGMELVG CLFSRNWNVR EMALRRLSHD ENSBTAP00000018325/1-1509 LTHYGTQQIP PSYKDLAEPW IQVFGMELVG CLFSRNWNVR EMALRRLSHD bmy_15521T0/1-1413 LTHYGTQQIP PAYKDLAEPW IQVFGMELVG CLFSRNWNVR EMALRRLSHD ENSTTRP00000010643/1-1469 LTHYGTQQIP PAYKDLAEPW IQVFGMELVG CLFSRNWNVR EMALRRLSHD BACU016761/1-1251 LTHYGTQQIP PAYKDLAEPW IQVFGMELVG CLFSRNWNVR EMALRRLSHD 601 650 ENSP00000382423/1-1512 VSGALLLANG ESTGNSGGSS GSSPSGGATS GSSQTSISGD VVEACCSVLS ENSBTAP00000018325/1-1509 VSGALLLANG ESTGNSGSSS GSGPGAGATS GSSQTSISGD VVEACCNVLS bmy_15521T0/1-1413 VSGALLLANG ESTGNSGSNG GSSPSAGAAS GSSQTSVSGD VVEACCNVLS ENSTTRP00000010643/1-1469 VSGALLLANG ESTGNSGSNG GSSPSAGAAS GSSQTSVSGD VVEACCNVLS BACU016761/1-1251 VSGALLLANG ESTGNSGSNG GSSPS--AAS GSSQTSVSGD VVEACCNVLS 651 700 ENSP00000382423/1-1512 MVCADPVYKV YVAALKTLRA MLVYTPCHSL AERIKLQRLL QPVVDTILVK ENSBTAP00000018325/1-1509 MVCADPVYKV YVAALKTLRA MLVYTPCHSL AERIKLQRLL RPVVDTILVK bmy_15521T0/1-1413 MVCADPVYKV YVAALA---- -LHYSSPFN- ---------M YFIQDSSLML ENSTTRP00000010643/1-1469 MVCADPVYKV YVAALKTLRA MLVYTPCHSL AERIKLQRLL RPVVDTILVK BACU016761/1-1251 MVCADPVYKV YVAALKTLRA MLVYTPCHSL AERIKLQRLL RPVVDTILVK 701 750 ENSP00000382423/1-1512 CADANSRTSQ LSISTLLELC KGQAGELAVG REILKAGSIG IGGVDYVLNC ENSBTAP00000018325/1-1509 CADVNSRTSQ LSISTLLELC KGQAGELAVG REILKAGSIG IGGVDYVLNC bmy_15521T0/1-1413 LPFIFSRTSQ LSISTLLELC KGQAGELAVG REILKAGSIG IGGVDYVLNC ENSTTRP00000010643/1-1469 CADVNSRTSQ LSISTLLELC KGQAGELAVG REILKAGSIG IGGVDYVLNC BACU016761/1-1251 CADVN----- ---------- ---------- ---------- ---------- 751 800 ENSP00000382423/1-1512 ILGNQTESNN WQELLGRLCL IDRLLLEFPA EFYPHIVSTD VSQAEPVEIR ENSBTAP00000018325/1-1509 ILGNQTESNN WQELLGRLCL IDRLLLEFPA EFYPHIVSTD ISQAEPVEVR bmy_15521T0/1-1413 ILGNQTESNN WQELLGRLCL IDRLLLEFPA EFYPHTVSTD VSQAEPVEVR ENSTTRP00000010643/1-1469 ILGNQTESNN WQELLGRLCL IDRLLLEFPA EFYPHTVSTD VSQAEPVEVR BACU016761/1-1251 ---------- ---------- ---------- ---------- ---------R 801 850 ENSP00000382423/1-1512 YKKLLSLLTF ALQSIDNSHS MVGKLSRRIY LSSARMVTTV PHVFSKLLEM ENSBTAP00000018325/1-1509 YKKLLSLLTF ALQSIDNSHS MVGKLSRRIY LSSARMVTAV PHVFSKLLEM bmy_15521T0/1-1413 YKKLLSLLTF ALQSIDNSHS MVGKLSRRIY LSSARMVTAV PHVFSKLLEM ENSTTRP00000010643/1-1469 YKKLLSLLTF ALQSIDNSHS MVGKLSRRIY LSSARMVTAV PHVFSKLLEM BACU016761/1-1251 YKKLLSLLTF ALQSIDNSHS MVGKLSRRIY LSSARMVTAV PHVFSKLLEM 851 900 ENSP00000382423/1-1512 LSVSSSTHFT RMRRRLMAIA DEVEIAEAIQ LGVEDTLDGQ QDSFLQASVP ENSBTAP00000018325/1-1509 LNVSSSTHFT RMRRRLMAIA DEVEIAEAIQ LGVEDTLDGR HDCFLQASAP bmy_15521T0/1-1413 LNVSSSTHFT RMRRRLMAIA DEVEIAEAIQ LGTEDTLDGR HDSFLKASVP ENSTTRP00000010643/1-1469 LNVSSSTHFT RMRRRLMAIA DEVEIAEAIQ LGI-DTLDGR HDSFLKAS-P BACU016761/1-1251 LNVSSSTHFT RMRRRLMAIA DEVEIAEAIQ LGIEDTLDGR HDSFLKASVP 901 950 ENSP00000382423/1-1512 NNYLETTENS SPECTVHLEK TGKGLCATKL SASSEDISER LASISVGPSS ENSBTAP00000018325/1-1509 NSYPEAMDNS SFERMDHLEK PGKGLCATKL SASSEDISDR LASISVGLPN bmy_15521T0/1-1413 NSCPEATENS SFERTDHLEK TGKGLCATKL SASSEDISDR LASISVGLPS ENSTTRP00000010643/1-1469 YSCPEATENS SFERTDH-EK TGKG-CATKL SASSEDI-DR LASISVGLHS BACU016761/1-1251 NSCPEATENS SFERTDHLEK TGKGLCATKL SASSEDISDR LASISVGLPS 951 1000 ENSP00000382423/1-1512 STTTTTTTTE QPKPMVQTKG RPHSQCLNSS PLSHHSQLMF PALSTPSSST ENSBTAP00000018325/1-1509 S-----TTME QPKPMVQTKG RPHSQCLNAS PASPHSQLMF PALSTPSSST bmy_15521T0/1-1413 S-----TTVE QPKPMVQTKG RPHSQCLNSS PLSHHSQLMF PALSSPSSSA ENSTTRP00000010643/1-1469 S-----TTME QPKPMVQTKG RPHSQCLNSS PLSHHSQLMF PALSSPSSSA BACU016761/1-1251 S-----TTME QPKPMVQTKG RPHSQCLNSS PLSHHSQLMF PALSSPSSSA 1001 1050 ENSP00000382423/1-1512 PSVPAGTATD VSKHRLQGFI PCRIPSASPQ TQRKFSLQFH RNCPENKDSD ENSBTAP00000018325/1-1509 PSVPSGTGTD LSKQRPQGFV PCKMPSASPQ TQRKFSLQFQ RNCSENKDSD bmy_15521T0/1-1413 PSVPPGTITD VSKHRPQGFV PCKIPSASPQ TQRKFSLQFQ RNCSENKDSD ENSTTRP00000010643/1-1469 PSVPPGTVTD VSKHRPQGFV PCKIPSASPQ TQRKFSLQFQ RNCSENKDSD BACU016761/1-1251 PSVPPGTVTD VSKHRPQGFV PCKIPSASPQ TQRKFSLQFQ RNCSENKDSD 1051 1100 ENSP00000382423/1-1512 KLSPVFTQSR PLPSSNIHRP KPSRPTPGNT SKQGDPSKNS MTLDLNSSSK ENSBTAP00000018325/1-1509 KLSPIFTQSR PLPSSNIHRP KPSRPTPSNT SKQGDASKNS MTLDLNSRSK bmy_15521T0/1-1413 KLSPIFTQSR PLPSSNIHRP KPSRPTPSNT SKQGDASKNS MTLDLNGSSK ENSTTRP00000010643/1-1469 KLSPIFTQSR PLPSSNIHRP KPSRPTPSNT SKQGDALKNS MTLDLNSSSK BACU016761/1-1251 KLSPIFTQSR PLPSSNIHRP KPSRPTPSNT SKQGDASKNS MTLDLNGSSK 1101 1150 ENSP00000382423/1-1512 CDDSFGCSSN SSNAVIPSDE TVFTPVEEKC RLDVNTELNS SIEDLLEASM ENSBTAP00000018325/1-1509 CDDSFGSSSN SSNAVIPSDE TVFTPVEEKC RLDVSTELNS SIEDLLEASM bmy_15521T0/1-1413 CDDGFGSSSN SSNAVIPSDE TVFTPVEEKC RLDVNTELNS SIEDLLEVSM ENSTTRP00000010643/1-1469 RDDGFGSSSN SSNAVIPSDE TVFTPVEEKC RLDVNTELNS SIEDLLEASM BACU016761/1-1251 CDDGFGRSSN SSNAVIPSDE TVFTPVEEKC RLDVNTELNS SIEDLLEASL 1151 1200 ENSP00000382423/1-1512 PSSDTTVTFK SEVAVLSPEK AENDDTYKDD VNHNQKCKEK MEAEEEEALA ENSBTAP00000018325/1-1509 PSSDTTVTFK SEVAVLSPEK DENDDTYKDD VNHNQKCKEK MEAEEEEALA bmy_15521T0/1-1413 PSSDTTVTFK SEVAVLSPEK DENDDTYKDD MNHNQKCKEK MEAEEEEALA ENSTTRP00000010643/1-1469 PSSDTTVTFK SEVAVLSPEK DENDDTYKDD MNHNQKCKEK MEAEEEEALA BACU016761/1-1251 PSSDTTVTFK SEVAVLSPEK DENDDTYKDD MNHNQKCKEK MEAEEEEALA 1201 1250 ENSP00000382423/1-1512 IAMAMSASQD ALPIVPQLQV ENGEDIIIIQ QDTPETLPGH TKAKQPYRED ENSBTAP00000018325/1-1509 IAMAMSASQD ALPVVPQLQV ENGEDIIIIQ QDTPETLPGH TKAKQPYRED bmy_15521T0/1-1413 IAMAMSASQD ALPIVPQLQI ENGEDIIIIQ QDTPETLPGH TKAKLPYRED ENSTTRP00000010643/1-1469 IAMAMSASQD ALPLVPQLQV ENGDDIIIIQ QDTPETLPGH TKAKQPYRED BACU016761/1-1251 IAMAMSASQD ALPIVPQLQI ENGEDIIIIQ QDTPETLPGH TKAKQPYRED 1251 1300 ENSP00000382423/1-1512 TEWLKGQQIG LGAFSSCYQA QDVGTGTLMA VKQVTYVRNT SSEQEEVVEA ENSBTAP00000018325/1-1509 SEWLKGQQIG LGAFSSCYQA QDVGTGTLMA VKQVTYVRNT SSEQEEVVEA bmy_15521T0/1-1413 TEWLKGQQIG LGAFSSCYQA QDVGTGTLMA VKQVTYVRNT SSEQEEVVEA ENSTTRP00000010643/1-1469 TEWLKGQQIG LGAFSSCYQA QDVGTGTLMA VKQVTYVRNT SSEQEEVVEA BACU016761/1-1251 TEWLKGQQIG LGAFSSCYQA QDVGTGTLMA VKQVTYVRNT SSEQEEVVEA 1301 1350 ENSP00000382423/1-1512 LREEIRMMSH LNHPNIIRML GATCEKSNYN LFIEWMA--G GSVAHLLSKY ENSBTAP00000018325/1-1509 LREEIRMMSH LNHPNIIRML GATCEKSNYN LFIEWMAGLG GSVAHLLSKY bmy_15521T0/1-1413 LREEIRMMSH LNHPNIIRML GATCEKSNYN LFIEWMA--G GSVAHLLSKY ENSTTRP00000010643/1-1469 LREEIRMMSH LNHPNIIRML GATCEKSNYN LFIEWMA--G GSVAHLLSKY BACU016761/1-1251 LREEIRMMSH LNHPNIIRML GATCEKSNYN LFIEWMA--G GSVAHLLSKY 1351 1400 ENSP00000382423/1-1512 GAFKESVVIN YTEQLLRGLS YLHENQIIHR DVKGANLLID STGQRLRIAD ENSBTAP00000018325/1-1509 GAFKESVVIN YTEQLLRGLS YLHENQIIHR DVKGANLLID STGQRLRIAD bmy_15521T0/1-1413 GAFKESVVIN YTEQLLRGLS YLHENQIIHR DVKGANLLID STGQRLRIAD ENSTTRP00000010643/1-1469 GAFKESVVIN YTEQLLRGLS YLHENQIIHR DVKGANLLID STGQRLRIAD BACU016761/1-1251 GAFKESVVIN YTEQLLRGLS YLHENQIIHR DVKGANLLID STGQRLRIAD 1401 1450 ENSP00000382423/1-1512 FGAAARLASK GTGAGEFQGQ LLGTIAFMAP EVLRGQQYGR SCDVWSVGCA ENSBTAP00000018325/1-1509 FGAAARLASK GTGAGEFQGQ LLGTIAFMAP EVLRGQQYGR SCDVWSVGCA bmy_15521T0/1-1413 FGAAARLASK GTGAGEFQGQ LLGTIAFMAP EVLRGQQYGR SCDVWSVGCA ENSTTRP00000010643/1-1469 FGAAARLASK GTGAGEFQGQ LLGTIAFMAP EVLRGQQY-V SCDVWS--CA BACU016761/1-1251 FGAAARLASK GTGAGEFQGQ LLGTIAFMAP EVLRGQQYGR SCDVWSVGCA 1451 1500 ENSP00000382423/1-1512 IIEMACAKPP WNAEKHSNHL ALIFKIASAT TAPSIPSHLS PGLRDVALRC ENSBTAP00000018325/1-1509 IIEMACAKPP WNAEKHSNHL ALIFKIASAT TAPSIPSHLS PGLRDVALRC bmy_15521T0/1-1413 IIEMACAKPP WNAEKHSNHL ALIFKIASAT TAPSIPSHLS PGLRDVALRC ENSTTRP00000010643/1-1469 IIEMACAKPP WNAEKHSNHL ALIFKIASAT TAPSIPSHLS P-LRDVALRC BACU016761/1-1251 IIEMACAKPP WNAEKHSNHL ALIFKIASAT TAPSIPSHLS PGLRDVALRC 1501 1550 ENSP00000382423/1-1512 LELQPQDRPP SRELLKHPVF RTTW ENSBTAP00000018325/1-1509 LELQPQDRPP SRELLKHPVF RTTW bmy_15521T0/1-1413 LELQPQDRPP SRELLKHPVF RTTW ENSTTRP00000010643/1-1469 LELQPQDRPP ---------- ---- BACU016761/1-1251 LELQPQDRPP SRELLKHPVF RTTW