KEY:
ENSP* - Homo sapiens (Human)
ENSBTA* - Bos taurus (Cow)
ENSTTR* - Tursiops truncatus (Dolphin)
bmy_* - Balaena mysticetus (Bowhead whale)
BACU* - Balaenoptera acutorostrata (Minke whale)
Copy from below the line for a valid .msf file.
----------------------------------------------------------------------------------
NoName MSF: 5 Type: P Thu May 15 17:04:12 2014 Check: 00 ..
Name: ENSP00000382423/1-1512 Len: 1524 Check: 8837 Weight: 1.00
Name: ENSBTAP00000018325/1-1509 Len: 1524 Check: 7514 Weight: 1.00
Name: bmy_15521T0/1-1413 Len: 1524 Check: 6652 Weight: 1.00
Name: ENSTTRP00000010643/1-1469 Len: 1524 Check: 7166 Weight: 1.00
Name: BACU016761/1-1251 Len: 1524 Check: 9774 Weight: 1.00
//
1 50
ENSP00000382423/1-1512 ------MAAA AGNRASSSGF PGARATSPEA GGGGGALKAS SAPAAAAGLL
ENSBTAP00000018325/1-1509 ------MAAA AGNRASSSGF PGAGAASPEA GGGRGALKAS SAPAAAAGLL
bmy_15521T0/1-1413 MGSGNIPDTQ PNDLSQNHLY QSEKQEYKHQ GETKLLHQSQ KMYLPKDAIL
ENSTTRP00000010643/1-1469 ------MAAA AENRASSSGF PGARAASPE- GRGXXXXXXX XXXXXXXXXX
BACU016761/1-1251 ---------- ---------- ---------- ---------- ----------
51 100
ENSP00000382423/1-1512 REAGSGGRER ADWRRRQLRK VRSVELDQLP EQPLFLAASP PASSTSPSPE
ENSBTAP00000018325/1-1509 REAGSGGRER ADWRRRQLRK VRSVELDQLP EPPLFLAASP PSSSTSPSPE
bmy_15521T0/1-1413 TPPPEYAFLE SLWSGFHIRP VKKIAFKDFP ---------- --SSQTRRPS
ENSTTRP00000010643/1-1469 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX
BACU016761/1-1251 ---------- ---------- ---------- ---------- ----------
101 150
ENSP00000382423/1-1512 PADAAGSGTG FQPVAVPPPH GAASRGGAHL TESVAAPDSG ASSPAAAEPG
ENSBTAP00000018325/1-1509 PPDAAAGGSG FQPVAVPPPH GAASRGGAHP AEPAAAPDSG AQSPAGAEPG
bmy_15521T0/1-1413 QPAFPQRLRG LALHIA---- ------SMQP LDLVLLPHMD HFNLFKVEQC
ENSTTRP00000010643/1-1469 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX TEPAAAPDSG APSPAGAEPG
BACU016761/1-1251 ---------- ---------- ---------- ---------- ----------
151 200
ENSP00000382423/1-1512 EKRAPAAEPS PAAAPAG--- REMENKETLK GLHKMDDRPE ERMIREKLKA
ENSBTAP00000018325/1-1509 EKRTPAAEPT -AAAPAG--- REMENKETLK GLHKMDDRPE ERMIREKLKA
bmy_15521T0/1-1413 RPLSNPCNLG PILNPRTEFR REMENKETLK GLHKMDDRPE ERMIREKLKA
ENSTTRP00000010643/1-1469 EKRTPAAEPP LAAAPAG--- REMENKETLK GLHKMDDRPE ERMIREKLKA
BACU016761/1-1251 ---------- ---------- REMENKETLK GLHKMDDRPE ERMIREKLKA
201 250
ENSP00000382423/1-1512 TCMPAWKHEW LERRNRRGPV VVKPIPVKGD GSEMNHLAAE SPGEVQASAA
ENSBTAP00000018325/1-1509 TCMPAWKHEW LERRNRRGPV VVKPIPIKGD GSEINNLAAE SQGEGPTSAA
bmy_15521T0/1-1413 TCMPAWKHEW LERRNRRGPV VVKPIPIKGD GSEINTLAAE SQGEGQASAA
ENSTTRP00000010643/1-1469 TCMPAWKHEW LERRNRRGPV VVKPIPIKGD GSEINTLAAE SQGEGHASAA
BACU016761/1-1251 TCMPAWKHEW LERRNRRGPV VVKPIPIKGD GSEINTLAAE SQGEGQASAA
251 300
ENSP00000382423/1-1512 SPASKGRRSP SPGNSPSGRT VKSESPGVRR KRVSPVPFQS GRITPPRRAP
ENSBTAP00000018325/1-1509 SSTPKGRRSP SPGSSPSGRT VKSESPGVRR KRVSPVPFQS GRITPPRRAP
bmy_15521T0/1-1413 SSAPKGRRSP SPGSSPSGRT VKSESPGVRR KKVSPVP--- ----------
ENSTTRP00000010643/1-1469 SSAPKGRRSP SPGSSPSGRT VKSESPGVRR KKVSPVPFQS GRITPPRRAP
BACU016761/1-1251 SSAPKGRRSP SPGSSPSGRT VKSESPGVRR KKVSPVPFQS GRITPPRRAP
301 350
ENSP00000382423/1-1512 SPDGFSPYSP EETNRRVNKV MRARLYLLQQ IGPNSFLIGG DSPDNKYRVF
ENSBTAP00000018325/1-1509 SPDGFSPYSP EETNRRVNKV MRARLYLLQQ IGPNSFLIGG DSPDNKYRVF
bmy_15521T0/1-1413 ---------- ---------- ---------- ---------- ----------
ENSTTRP00000010643/1-1469 SPDGFSPYSP EETNRRVNKV MRARLYLLQQ IGPNSFLIGG DSPDNKYRVF
BACU016761/1-1251 SPDGFSPYSP EETNRRVNKV MRARLYLLQQ IGPNSFLIGG DSPDNKYRVF
351 400
ENSP00000382423/1-1512 IGPQNCSCAR GTFCIHLLFV MLRVFQLEPS DPMLWRKTLK NFEVESLFQK
ENSBTAP00000018325/1-1509 IGPQNCSCGR GTFCIHLLFV MLRVFQLEPS DPMLWRKTLK NFEVESLFQK
bmy_15521T0/1-1413 ----NCSCGR GTFCIHLLFV MLRVFQLEPS DPMLWRKTLK NFEVESLFQK
ENSTTRP00000010643/1-1469 IGPQNCSCGR GTFCIHLLFV MLRVFQLEPS DPMLWRKTLK NFEVESLFQK
BACU016761/1-1251 IGPQNCSCGR GTFCIHLLFV MLRVFQLEPS DPMLWRKTLK NFEVESLFQK
401 450
ENSP00000382423/1-1512 YHSRRSSRIK APSRNTIQKF VSRMSNSHTL SSSSTSTSSS ENSIKDEEEQ
ENSBTAP00000018325/1-1509 YHSRRSSRIK APSRNTIQKF VSRMSNSHTL SSSSTSTSSS ENSIKDEEEQ
bmy_15521T0/1-1413 YHSRRSSRIK APSRNTIQKF VSRMSNSHTL SSSSTSTSSS ENSIKDEEEQ
ENSTTRP00000010643/1-1469 YHSRRSSRIK APSRNTIQKF VSRMSNSHTL SSSSTSTSSS ENSIKDEEEQ
BACU016761/1-1251 YHSRRSSRIK APSRNTIQKF VSRMSNSHTL SSSSTSTSSS ENSIKDEEEQ
451 500
ENSP00000382423/1-1512 MCPICLLGML DEESLTVCED GCRNKLHHHC MSIWAEECRR NREPLICPLC
ENSBTAP00000018325/1-1509 MCPICLLGML DEESLTVCED GCRNKLHHHC MSIWAEECRR NREPLICPLC
bmy_15521T0/1-1413 MCPICLLGML DEESLTVCED GCRNKLHHHC MSIWAEECRR NREPLICPLC
ENSTTRP00000010643/1-1469 MCPICLLGML DEESXT---- ---------- -SIWAEECRR NREPLICPLC
BACU016761/1-1251 MCPICLLGML DEESLTVCED GCRNKLHHHC MSIWAEECRR NREPLICPLC
501 550
ENSP00000382423/1-1512 RSKWRSHDFY SHELSSPVDS PSSLRAAQQQ TVQQQPLAGS -RRNQESNFN
ENSBTAP00000018325/1-1509 RSKWRSHDFY SHELSSPVDS PSPLRAPQQQ TTQQHALAGS QRRNQEGSLT
bmy_15521T0/1-1413 RSKWRSHDFY SHELSSPVDS PSSLRAAQQQ TTQQHPLAGS QRRNQESNFN
ENSTTRP00000010643/1-1469 RSKWRSHDFY SHELSSPVDS PSSLRAAQQQ TTQQHPLAGS QRRNQESNFN
BACU016761/1-1251 RSKWRSHDFY SHELPSPVDS PPSLRAAQQQ TTQQHPLAGS QRRNQESNFN
551 600
ENSP00000382423/1-1512 LTHYGTQQIP PAYKDLAEPW IQVFGMELVG CLFSRNWNVR EMALRRLSHD
ENSBTAP00000018325/1-1509 LTHYGTQQIP PSYKDLAEPW IQVFGMELVG CLFSRNWNVR EMALRRLSHD
bmy_15521T0/1-1413 LTHYGTQQIP PAYKDLAEPW IQVFGMELVG CLFSRNWNVR EMALRRLSHD
ENSTTRP00000010643/1-1469 LTHYGTQQIP PAYKDLAEPW IQVFGMELVG CLFSRNWNVR EMALRRLSHD
BACU016761/1-1251 LTHYGTQQIP PAYKDLAEPW IQVFGMELVG CLFSRNWNVR EMALRRLSHD
601 650
ENSP00000382423/1-1512 VSGALLLANG ESTGNSGGSS GSSPSGGATS GSSQTSISGD VVEACCSVLS
ENSBTAP00000018325/1-1509 VSGALLLANG ESTGNSGSSS GSGPGAGATS GSSQTSISGD VVEACCNVLS
bmy_15521T0/1-1413 VSGALLLANG ESTGNSGSNG GSSPSAGAAS GSSQTSVSGD VVEACCNVLS
ENSTTRP00000010643/1-1469 VSGALLLANG ESTGNSGSNG GSSPSAGAAS GSSQTSVSGD VVEACCNVLS
BACU016761/1-1251 VSGALLLANG ESTGNSGSNG GSSPS--AAS GSSQTSVSGD VVEACCNVLS
651 700
ENSP00000382423/1-1512 MVCADPVYKV YVAALKTLRA MLVYTPCHSL AERIKLQRLL QPVVDTILVK
ENSBTAP00000018325/1-1509 MVCADPVYKV YVAALKTLRA MLVYTPCHSL AERIKLQRLL RPVVDTILVK
bmy_15521T0/1-1413 MVCADPVYKV YVAALA---- -LHYSSPFN- ---------M YFIQDSSLML
ENSTTRP00000010643/1-1469 MVCADPVYKV YVAALKTLRA MLVYTPCHSL AERIKLQRLL RPVVDTILVK
BACU016761/1-1251 MVCADPVYKV YVAALKTLRA MLVYTPCHSL AERIKLQRLL RPVVDTILVK
701 750
ENSP00000382423/1-1512 CADANSRTSQ LSISTLLELC KGQAGELAVG REILKAGSIG IGGVDYVLNC
ENSBTAP00000018325/1-1509 CADVNSRTSQ LSISTLLELC KGQAGELAVG REILKAGSIG IGGVDYVLNC
bmy_15521T0/1-1413 LPFIFSRTSQ LSISTLLELC KGQAGELAVG REILKAGSIG IGGVDYVLNC
ENSTTRP00000010643/1-1469 CADVNSRTSQ LSISTLLELC KGQAGELAVG REILKAGSIG IGGVDYVLNC
BACU016761/1-1251 CADVN----- ---------- ---------- ---------- ----------
751 800
ENSP00000382423/1-1512 ILGNQTESNN WQELLGRLCL IDRLLLEFPA EFYPHIVSTD VSQAEPVEIR
ENSBTAP00000018325/1-1509 ILGNQTESNN WQELLGRLCL IDRLLLEFPA EFYPHIVSTD ISQAEPVEVR
bmy_15521T0/1-1413 ILGNQTESNN WQELLGRLCL IDRLLLEFPA EFYPHTVSTD VSQAEPVEVR
ENSTTRP00000010643/1-1469 ILGNQTESNN WQELLGRLCL IDRLLLEFPA EFYPHTVSTD VSQAEPVEVR
BACU016761/1-1251 ---------- ---------- ---------- ---------- ---------R
801 850
ENSP00000382423/1-1512 YKKLLSLLTF ALQSIDNSHS MVGKLSRRIY LSSARMVTTV PHVFSKLLEM
ENSBTAP00000018325/1-1509 YKKLLSLLTF ALQSIDNSHS MVGKLSRRIY LSSARMVTAV PHVFSKLLEM
bmy_15521T0/1-1413 YKKLLSLLTF ALQSIDNSHS MVGKLSRRIY LSSARMVTAV PHVFSKLLEM
ENSTTRP00000010643/1-1469 YKKLLSLLTF ALQSIDNSHS MVGKLSRRIY LSSARMVTAV PHVFSKLLEM
BACU016761/1-1251 YKKLLSLLTF ALQSIDNSHS MVGKLSRRIY LSSARMVTAV PHVFSKLLEM
851 900
ENSP00000382423/1-1512 LSVSSSTHFT RMRRRLMAIA DEVEIAEAIQ LGVEDTLDGQ QDSFLQASVP
ENSBTAP00000018325/1-1509 LNVSSSTHFT RMRRRLMAIA DEVEIAEAIQ LGVEDTLDGR HDCFLQASAP
bmy_15521T0/1-1413 LNVSSSTHFT RMRRRLMAIA DEVEIAEAIQ LGTEDTLDGR HDSFLKASVP
ENSTTRP00000010643/1-1469 LNVSSSTHFT RMRRRLMAIA DEVEIAEAIQ LGI-DTLDGR HDSFLKAS-P
BACU016761/1-1251 LNVSSSTHFT RMRRRLMAIA DEVEIAEAIQ LGIEDTLDGR HDSFLKASVP
901 950
ENSP00000382423/1-1512 NNYLETTENS SPECTVHLEK TGKGLCATKL SASSEDISER LASISVGPSS
ENSBTAP00000018325/1-1509 NSYPEAMDNS SFERMDHLEK PGKGLCATKL SASSEDISDR LASISVGLPN
bmy_15521T0/1-1413 NSCPEATENS SFERTDHLEK TGKGLCATKL SASSEDISDR LASISVGLPS
ENSTTRP00000010643/1-1469 YSCPEATENS SFERTDH-EK TGKG-CATKL SASSEDI-DR LASISVGLHS
BACU016761/1-1251 NSCPEATENS SFERTDHLEK TGKGLCATKL SASSEDISDR LASISVGLPS
951 1000
ENSP00000382423/1-1512 STTTTTTTTE QPKPMVQTKG RPHSQCLNSS PLSHHSQLMF PALSTPSSST
ENSBTAP00000018325/1-1509 S-----TTME QPKPMVQTKG RPHSQCLNAS PASPHSQLMF PALSTPSSST
bmy_15521T0/1-1413 S-----TTVE QPKPMVQTKG RPHSQCLNSS PLSHHSQLMF PALSSPSSSA
ENSTTRP00000010643/1-1469 S-----TTME QPKPMVQTKG RPHSQCLNSS PLSHHSQLMF PALSSPSSSA
BACU016761/1-1251 S-----TTME QPKPMVQTKG RPHSQCLNSS PLSHHSQLMF PALSSPSSSA
1001 1050
ENSP00000382423/1-1512 PSVPAGTATD VSKHRLQGFI PCRIPSASPQ TQRKFSLQFH RNCPENKDSD
ENSBTAP00000018325/1-1509 PSVPSGTGTD LSKQRPQGFV PCKMPSASPQ TQRKFSLQFQ RNCSENKDSD
bmy_15521T0/1-1413 PSVPPGTITD VSKHRPQGFV PCKIPSASPQ TQRKFSLQFQ RNCSENKDSD
ENSTTRP00000010643/1-1469 PSVPPGTVTD VSKHRPQGFV PCKIPSASPQ TQRKFSLQFQ RNCSENKDSD
BACU016761/1-1251 PSVPPGTVTD VSKHRPQGFV PCKIPSASPQ TQRKFSLQFQ RNCSENKDSD
1051 1100
ENSP00000382423/1-1512 KLSPVFTQSR PLPSSNIHRP KPSRPTPGNT SKQGDPSKNS MTLDLNSSSK
ENSBTAP00000018325/1-1509 KLSPIFTQSR PLPSSNIHRP KPSRPTPSNT SKQGDASKNS MTLDLNSRSK
bmy_15521T0/1-1413 KLSPIFTQSR PLPSSNIHRP KPSRPTPSNT SKQGDASKNS MTLDLNGSSK
ENSTTRP00000010643/1-1469 KLSPIFTQSR PLPSSNIHRP KPSRPTPSNT SKQGDALKNS MTLDLNSSSK
BACU016761/1-1251 KLSPIFTQSR PLPSSNIHRP KPSRPTPSNT SKQGDASKNS MTLDLNGSSK
1101 1150
ENSP00000382423/1-1512 CDDSFGCSSN SSNAVIPSDE TVFTPVEEKC RLDVNTELNS SIEDLLEASM
ENSBTAP00000018325/1-1509 CDDSFGSSSN SSNAVIPSDE TVFTPVEEKC RLDVSTELNS SIEDLLEASM
bmy_15521T0/1-1413 CDDGFGSSSN SSNAVIPSDE TVFTPVEEKC RLDVNTELNS SIEDLLEVSM
ENSTTRP00000010643/1-1469 RDDGFGSSSN SSNAVIPSDE TVFTPVEEKC RLDVNTELNS SIEDLLEASM
BACU016761/1-1251 CDDGFGRSSN SSNAVIPSDE TVFTPVEEKC RLDVNTELNS SIEDLLEASL
1151 1200
ENSP00000382423/1-1512 PSSDTTVTFK SEVAVLSPEK AENDDTYKDD VNHNQKCKEK MEAEEEEALA
ENSBTAP00000018325/1-1509 PSSDTTVTFK SEVAVLSPEK DENDDTYKDD VNHNQKCKEK MEAEEEEALA
bmy_15521T0/1-1413 PSSDTTVTFK SEVAVLSPEK DENDDTYKDD MNHNQKCKEK MEAEEEEALA
ENSTTRP00000010643/1-1469 PSSDTTVTFK SEVAVLSPEK DENDDTYKDD MNHNQKCKEK MEAEEEEALA
BACU016761/1-1251 PSSDTTVTFK SEVAVLSPEK DENDDTYKDD MNHNQKCKEK MEAEEEEALA
1201 1250
ENSP00000382423/1-1512 IAMAMSASQD ALPIVPQLQV ENGEDIIIIQ QDTPETLPGH TKAKQPYRED
ENSBTAP00000018325/1-1509 IAMAMSASQD ALPVVPQLQV ENGEDIIIIQ QDTPETLPGH TKAKQPYRED
bmy_15521T0/1-1413 IAMAMSASQD ALPIVPQLQI ENGEDIIIIQ QDTPETLPGH TKAKLPYRED
ENSTTRP00000010643/1-1469 IAMAMSASQD ALPLVPQLQV ENGDDIIIIQ QDTPETLPGH TKAKQPYRED
BACU016761/1-1251 IAMAMSASQD ALPIVPQLQI ENGEDIIIIQ QDTPETLPGH TKAKQPYRED
1251 1300
ENSP00000382423/1-1512 TEWLKGQQIG LGAFSSCYQA QDVGTGTLMA VKQVTYVRNT SSEQEEVVEA
ENSBTAP00000018325/1-1509 SEWLKGQQIG LGAFSSCYQA QDVGTGTLMA VKQVTYVRNT SSEQEEVVEA
bmy_15521T0/1-1413 TEWLKGQQIG LGAFSSCYQA QDVGTGTLMA VKQVTYVRNT SSEQEEVVEA
ENSTTRP00000010643/1-1469 TEWLKGQQIG LGAFSSCYQA QDVGTGTLMA VKQVTYVRNT SSEQEEVVEA
BACU016761/1-1251 TEWLKGQQIG LGAFSSCYQA QDVGTGTLMA VKQVTYVRNT SSEQEEVVEA
1301 1350
ENSP00000382423/1-1512 LREEIRMMSH LNHPNIIRML GATCEKSNYN LFIEWMA--G GSVAHLLSKY
ENSBTAP00000018325/1-1509 LREEIRMMSH LNHPNIIRML GATCEKSNYN LFIEWMAGLG GSVAHLLSKY
bmy_15521T0/1-1413 LREEIRMMSH LNHPNIIRML GATCEKSNYN LFIEWMA--G GSVAHLLSKY
ENSTTRP00000010643/1-1469 LREEIRMMSH LNHPNIIRML GATCEKSNYN LFIEWMA--G GSVAHLLSKY
BACU016761/1-1251 LREEIRMMSH LNHPNIIRML GATCEKSNYN LFIEWMA--G GSVAHLLSKY
1351 1400
ENSP00000382423/1-1512 GAFKESVVIN YTEQLLRGLS YLHENQIIHR DVKGANLLID STGQRLRIAD
ENSBTAP00000018325/1-1509 GAFKESVVIN YTEQLLRGLS YLHENQIIHR DVKGANLLID STGQRLRIAD
bmy_15521T0/1-1413 GAFKESVVIN YTEQLLRGLS YLHENQIIHR DVKGANLLID STGQRLRIAD
ENSTTRP00000010643/1-1469 GAFKESVVIN YTEQLLRGLS YLHENQIIHR DVKGANLLID STGQRLRIAD
BACU016761/1-1251 GAFKESVVIN YTEQLLRGLS YLHENQIIHR DVKGANLLID STGQRLRIAD
1401 1450
ENSP00000382423/1-1512 FGAAARLASK GTGAGEFQGQ LLGTIAFMAP EVLRGQQYGR SCDVWSVGCA
ENSBTAP00000018325/1-1509 FGAAARLASK GTGAGEFQGQ LLGTIAFMAP EVLRGQQYGR SCDVWSVGCA
bmy_15521T0/1-1413 FGAAARLASK GTGAGEFQGQ LLGTIAFMAP EVLRGQQYGR SCDVWSVGCA
ENSTTRP00000010643/1-1469 FGAAARLASK GTGAGEFQGQ LLGTIAFMAP EVLRGQQY-V SCDVWS--CA
BACU016761/1-1251 FGAAARLASK GTGAGEFQGQ LLGTIAFMAP EVLRGQQYGR SCDVWSVGCA
1451 1500
ENSP00000382423/1-1512 IIEMACAKPP WNAEKHSNHL ALIFKIASAT TAPSIPSHLS PGLRDVALRC
ENSBTAP00000018325/1-1509 IIEMACAKPP WNAEKHSNHL ALIFKIASAT TAPSIPSHLS PGLRDVALRC
bmy_15521T0/1-1413 IIEMACAKPP WNAEKHSNHL ALIFKIASAT TAPSIPSHLS PGLRDVALRC
ENSTTRP00000010643/1-1469 IIEMACAKPP WNAEKHSNHL ALIFKIASAT TAPSIPSHLS P-LRDVALRC
BACU016761/1-1251 IIEMACAKPP WNAEKHSNHL ALIFKIASAT TAPSIPSHLS PGLRDVALRC
1501 1550
ENSP00000382423/1-1512 LELQPQDRPP SRELLKHPVF RTTW
ENSBTAP00000018325/1-1509 LELQPQDRPP SRELLKHPVF RTTW
bmy_15521T0/1-1413 LELQPQDRPP SRELLKHPVF RTTW
ENSTTRP00000010643/1-1469 LELQPQDRPP ---------- ----
BACU016761/1-1251 LELQPQDRPP SRELLKHPVF RTTW