KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:04:13 2014 Check: 00 .. Name: ENSP00000264039/1-558 Len: 559 Check: 8515 Weight: 1.00 Name: ENSBTAP00000018329/1-559 Len: 559 Check: 5068 Weight: 1.00 Name: BACU011030/1-398 Len: 559 Check: 3308 Weight: 1.00 Name: bmy_14797T0/1-420 Len: 559 Check: 3185 Weight: 1.00 Name: ENSTTRP00000009601/1-538 Len: 559 Check: 5122 Weight: 1.00 // 1 50 ENSP00000264039/1-558 MELRARGWWL LCAAAALVAC ARGDPASKSR SCGEVRQIYG AKGFSLSDVP ENSBTAP00000018329/1-559 MELRARGWWL LYAAAVLVAC ARGDPASKSR SCGEVRQIYG AKGFSLSDVP BACU011030/1-398 MELRARGWWV LCVAVALAAC AHGDPASKSR SCGEVRQI-- ---------- bmy_14797T0/1-420 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000009601/1-538 ---------- ---------- -HGDPASKSR SCGEVRHIYW TKGFSLSDVP 51 100 ENSP00000264039/1-558 QAEISGEHLR ICPQGYTCCT SEMEENLANR SHAELETALR DSSRVLQAML ENSBTAP00000018329/1-559 QAEISGEHLR ICPQGYTCCT SEMEENLANR SRAELETALL EGTRALQATL BACU011030/1-398 ---------- ---------- ---------- ---------- ---------- bmy_14797T0/1-420 ---------- ---------- --MEEKLANR SRAELETALL DSGRALQATL ENSTTRP00000009601/1-538 QAEISGEHLR ICPQGYTCCT SEMEENLANR SRAELETALL DSGRALQATL 101 150 ENSP00000264039/1-558 ATQLRSFDDH FQHLLNDSER TLQATFPGAF GELYTQNARA FRDLYSELRL ENSBTAP00000018329/1-559 AAQQRGFDDH FQRLLNDSER ALQEAFPGAF GELYTQNAKA FRDLYAELRL BACU011030/1-398 ---------- ---------- ---------- ---YGAKGFS LSDV------ bmy_14797T0/1-420 AAQLRGFDDH FQRLLNDSER ALQEAFPGAF GELYVQNAKA FRDLYTELRL ENSTTRP00000009601/1-538 ATQLRGFDDH FQRLLNDSER ALQETFPGAF GELYVQNAKA FRDLYAELRL 151 200 ENSP00000264039/1-558 YYRGANLHLE ETLAEFWARL LERLFKQLHP QLLLPDDYLD CLGKQAEALR ENSBTAP00000018329/1-559 YYGGANLHLQ ETLAEFWARL LERLFRQLHP QLLLPDDYLD CLGKQAEPLR BACU011030/1-398 ---------- ---------- ---------P QAEISG---- ---------- bmy_14797T0/1-420 YYRGANLHLE ETLAEFWARL LERLFRQLHP QLLLPDDYLD CLGKQAEPLR ENSTTRP00000009601/1-538 YYRGANLHLE ETLAEFWARL LERLFRQLHP QLLLPDDYLD CLGKQAEPLR 201 250 ENSP00000264039/1-558 PFGEAPRELR LRATRAFVAA RSFVQGLGVA SDVVRKVAQV PLGPECSRAV ENSBTAP00000018329/1-559 PFGEAPRELR LRATRAFVAA RTFVQGLGVA GDVVRKVAKV PLSPECSRAV BACU011030/1-398 -----PR--- -RACRAAHLL R------GCA QAAL--APQV PLSPECSRSV bmy_14797T0/1-420 PFGEAPRELR LRATRAFVAA RAFVQGLGVA SDVVRKVAQV PLSPECSRSV ENSTTRP00000009601/1-538 PFGEAPRELR LRATRAFVAA RAFVQGLGVA SDVVRKVAQV PLSPECSRAV 251 300 ENSP00000264039/1-558 MKLVYCAHCL GVPGARPCPD YCRNVLKGCL ANQADLDAEW RNLLDSMVLI ENSBTAP00000018329/1-559 MKLVYCAHCL GVPGARPCPD YCRNVLKGCL ANQADLDAEW RNLLDSMVLI BACU011030/1-398 MKLVYCAHCL GVPGARPCPD YCRNVLKGCL ANQADLDAEW RNLLDSMVLI bmy_14797T0/1-420 MKLVYCAHCL GVPGARPCPD YCRNVLKGCL ANQADLDAEW RNLLDSMVLI ENSTTRP00000009601/1-538 MKLVYCAHCL GVPGARPCPD YCRNVLKGCL ANQADLDAEW RNLLDSMVLI 301 350 ENSP00000264039/1-558 TDKFWGTSGV ESVIGSVHTW LAEAINALQD NRDTLTAKVI QGCGNPKVNP ENSBTAP00000018329/1-559 TDKFWGPSGA ESVVGGVHYW LAEAINALQD NSDTLTAKVI QGCGNPKVNP BACU011030/1-398 TDKFWGPTGA ESVIGGVHLW LAEAIGALQD SSDTLTAKVI QGCGNPKVNP bmy_14797T0/1-420 TDKFWGPTGA ESVVGGVHLW LAEAIGALQD SSDTLTAKVI QGCGNPKVNP ENSTTRP00000009601/1-538 TDKFWGPTGA ESVIGGVHLW LAEAISALQD NSDTLTAKVI QGCGNPKVNP 351 400 ENSP00000264039/1-558 QGPGPEEKRR RGKLAPRERP PSGTLEKLVS EAKAQLRDVQ DFWISLPGTL ENSBTAP00000018329/1-559 QGPGTEEKWP RGKLALQERP PAGTLQKLVS EAKAQLRDAQ DFWISLPGTL BACU011030/1-398 QGPEPEEKRR RGKLALPEKP PTGTLQKLVS EAKAQLRDAQ DFWISLPGTL bmy_14797T0/1-420 QGPEPEEKRR RGKLALPEKP PTGTLQKLVS EAKAQLRDAQ DFWISLPGTL ENSTTRP00000009601/1-538 QGPEPEEKRR RGKLALPEKP PAGTLQKLVS EAKAQLRDAQ DFWISLPGTL 401 450 ENSP00000264039/1-558 CSEKMALSTA SDDRCWNGMA RGRYLPEVMG DGLANQINNP EVEVDITKPD ENSBTAP00000018329/1-559 CSEKLAMSSA SDERCWNGMA KGRYLPEVMG DGLANQINNP EVEVDITKPD BACU011030/1-398 CSEKLAMSAA SDDRCWNGVA KGRYLPEVMG DGLANQINNP EVEVDITKPD bmy_14797T0/1-420 CSEKLAMSAA SDDRCWNGVA KGRYLPEVMG DGLANQINNP EVEVDITKPD ENSTTRP00000009601/1-538 CSEKLAMSAA SDDRCWNGVA KGRYLPEVMG DGLANQINNP EVEVDITKPD 451 500 ENSP00000264039/1-558 MTIRQQIMQL KIMTNRLRSA YNGNDVDFQD ASDDGSGSGS GDGCLDDLCS ENSBTAP00000018329/1-559 MTIRQQIMQL KIMTNRLRGA YNGNDLDFQD ASDDGSGSGS GEGCPDEMCG BACU011030/1-398 MTIRQQIMQL KITTNRLRSA YNGNDVDFQD ASDDGSGSGS GEGCPDNECG bmy_14797T0/1-420 MTIRQQIMQL KIMTNRLRGA YNGNDVDFQD ASESAAPGGP GG-------- ENSTTRP00000009601/1-538 MAIRQQIMQL KITTNRLRGA YNGNDVDFQD ASDDGSGSGS GEGCPDDECG 501 550 ENSP00000264039/1-558 RKVSRKSSSS RTPLTHALPG LSEQEGQKTS AASCPQPPTF LLPLL-LFLA ENSBTAP00000018329/1-559 RKVGRKSASS RTPLTHALPG LSEREGQQTS AAAPTPPQAS PLLLLGLALA BACU011030/1-398 RRVSKKGSSS RTPLSHALPG LSEQGGQKTS ATGCPRPCTC LLLLSVLTLV bmy_14797T0/1-420 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000009601/1-538 RRVGRKSSSS RTPLSHALPG LSEREGQKAS ATGRPQPCTR LLLLSGLPLV 551 600 ENSP00000264039/1-558 LTVARPRWR ENSBTAP00000018329/1-559 LPAVAPRGR BACU011030/1-398 LSAARPRWR bmy_14797T0/1-420 --------- ENSTTRP00000009601/1-538 LSAARPWWR