KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:04:14 2014 Check: 00 .. Name: ENSP00000345530/1-1247 Len: 1330 Check: 5633 Weight: 1.00 Name: ENSBTAP00000018331/1-1319 Len: 1330 Check: 9962 Weight: 1.00 Name: ENSTTRP00000007627/1-1193 Len: 1330 Check: 7216 Weight: 1.00 Name: bmy_13269T0/1-834 Len: 1330 Check: 8629 Weight: 1.00 Name: BACU016382/1-1297 Len: 1330 Check: 1026 Weight: 1.00 // 1 50 ENSP00000345530/1-1247 MAQSLRLHFA ARRSNTYPLS ETSGDDLDSH VHMCFKRPTR ISTSNVVQMK ENSBTAP00000018331/1-1319 MAQSLRLHFA ARRSNTYPLS ETSGDDLDSS IHMCFTRPTR ISTANVVQMK ENSTTRP00000007627/1-1193 MAQSLRLHFA ARRSNTYPVS ETSGDDSDSS VHMCFTRPTR TSTSNTVQMK bmy_13269T0/1-834 ---------- ---------- ---------- ---------- ---------- BACU016382/1-1297 MAQSLRLHFA ARRSNTYPVS ETSGDDSDSS VHMCFTRPTR ISTSNVVQMK 51 100 ENSP00000345530/1-1247 LTPRQTALAP LIKENVQSQE RSSVPSSENV NKKSSCLQIS LQPTRYSGYL ENSBTAP00000018331/1-1319 LTPKQTALAP LIKENLKSRE RSSFPSPENV HKKSSCLQIS LQPTRYSGCL ENSTTRP00000007627/1-1193 LTPRQTTLPP LIKENVKSQE GSSVPSPENV NKKSSCLQIS LQPTRYSGCL bmy_13269T0/1-834 ---------- ---------- ---------- ---------- ---------- BACU016382/1-1297 LTPRQTTLPP LIKENVKSQE GSSVPSPENV NKKSSCLQIS LQPTRYSGCL 101 150 ENSP00000345530/1-1247 QSSNVLADSD DASFTCILKD GIYSSAVVDN ELNAVNDGHL VSSPAICSGS ENSBTAP00000018331/1-1319 QSGNVLADGD DASFTCVLKD G---SAVVDN ELNAMDDGNL LSSPAICSGS ENSTTRP00000007627/1-1193 QSGNVLADDD DASFTCVLKD G---SAVVDN ELNAVDDGNL LSSPAICSGS bmy_13269T0/1-834 ---------- ---------- ---------- ---------- ---------- BACU016382/1-1297 QSGNVLADGG DASFTCVLKD G---SAVVDN ELNAVDDGNL LSSPAICSGS 151 200 ENSP00000345530/1-1247 LSNFSTSDNG SYSSNGSDFG SCASITSGGS YTNSVISDSS SYTFPPSDDT ENSBTAP00000018331/1-1319 LSNFAASENG SYSSNGSDYG SCTSITSGGS YTNSNISDSS GYTFPPTDDT ENSTTRP00000007627/1-1193 LSHFSASENG SYSSNGSDYG SCTSITSGGS YTNSIISDSS GYTFPPTDDT bmy_13269T0/1-834 ---------- ---------- ---------- ---------- ---------- BACU016382/1-1297 LSHFSASENG SYSSNGSDYG SCTSITSGGS YTNSIISDSS GYTFPPTDDT 201 250 ENSP00000345530/1-1247 FLGGNLPSDS TSNRSVPNRN TTPCEIFSRS TSTDPFVQDD LEHGLEIMKL ENSBTAP00000018331/1-1319 FFGGNLSSDS ASNRSVPNRN TTPCEIFSRS TSTVPFVQDD LDHGLEIMKL ENSTTRP00000007627/1-1193 FFGGNSSSDS ISNRSLPNRN TTPCEIFSRS RSTVPFVQHD LDRGLEIMKL bmy_13269T0/1-834 ---------- ---------- --MCKI-SRS Q--------- ---------- BACU016382/1-1297 FFGGNSSSDS ISNRSLPNRN TTPCEIFSRS RSTVPFVQHD LDRGLEIMKL 251 300 ENSP00000345530/1-1247 PVSRNTKIPL KRYSSLVIFP RSPSTTRPTS PTSLCTLLSK GSYQTSHQFI ENSBTAP00000018331/1-1319 PVSRNSKIPL KRCSSLVIFP RSPSNTPPTS PTSTGTLSSK GSYQTSHQFI ENSTTRP00000007627/1-1193 PVSRNLKIPL KRCSSLVIFP RSPSDTPPTS LTSTGTPPSK GSYQTSHQFI bmy_13269T0/1-834 ---------- ---------- ---------- ---------- --YRTI---- BACU016382/1-1297 PVSRNSKIPL KRCSSLVIFP RSPSNTPPTS LTSTGTPPSK GSYQTSHQFI 301 350 ENSP00000345530/1-1247 ISPSEIAHNE DGTSAKGFLS TAVNGLRLSK TICTPGEVRD IRPLHRKGSL ENSBTAP00000018331/1-1319 ISPSEIAHNE DGTSAKGFLS TAVNGLRLSK TVCTPGEVRD IRPLHRKGSL ENSTTRP00000007627/1-1193 ISPSEIAHNE DGSSAKGFLS TAVNGLRLSK TICTPREVRD IRPLH--SSL bmy_13269T0/1-834 ---------- ---------- ---------- ---------- -------SDL BACU016382/1-1297 ISPSEIAHNE DGSSAKGFLS TAVNGLRLSK TICTPREVRD IQPLH--SSL 351 400 ENSP00000345530/1-1247 QKKIVLSNNT PRQTVCEKSS EGYSCVSVHF TQRKAATLDC ETTNGDCKPE ENSBTAP00000018331/1-1319 QKKIIIANNS PNQTVCEKPS EGYSCVSLHF TQQKATALDC EAANGDCKPE ENSTTRP00000007627/1-1193 QKKIVIANNS PNQTVCEKSS EGYSCVSVHF TQQKATALDC ETANGDCRPE bmy_13269T0/1-834 YRRIM----- ---TFAHRKF ES-SCVKTVV IEQET----- ---------- BACU016382/1-1297 QKKIVIANNS PNQTVCEKSS EGYSCVSVHF TQQKATALDC ETANGDCRPE 401 450 ENSP00000345530/1-1247 MSEIKLNSDS EYIKLMHRTS ACLPSSQNVD CQININGELE RPHSQMNKNH ENSBTAP00000018331/1-1319 MSETELNSDP EFIKLMHRTS ACLPSSQNVD YQININGQLE RPNLQINKNH ENSTTRP00000007627/1-1193 MSEIKLNSDS EYIKLTHRTS ACLPSSQNVD YQININGQLE RPHLQINKNH bmy_13269T0/1-834 ---------- ---------- ---------- -EIHIFRILE ---------- BACU016382/1-1297 MSEIKLNSDS EYIKLMHRTS ACLPSSQNVD YQININGQLE RPHLQINKNH 451 500 ENSP00000345530/1-1247 GILRRSISLG GAYPNISCLS SLKHNCSKGG PSQLLIKFAS GNEGKVDNLS ENSBTAP00000018331/1-1319 ALLQRSISLG GTYPNVSCLS SIKHNCSKGG PSQLLIKFAS GNEGKVDNLT ENSTTRP00000007627/1-1193 ALLQRSISLG GTYPNVSCLS SLKHSCSKGG PSQLLIKFAS RNEGKVDNLT bmy_13269T0/1-834 ---------- ---------- ---------- ---------- ---------- BACU016382/1-1297 AFLQRSISLG GTYPNVSCLS SLKHNCSKGG PSQLLIKFAS RNEGKVDNLT 501 550 ENSP00000345530/1-1247 RDSNRDCTNE LSN----SCK ---------- ---------- ---------- ENSBTAP00000018331/1-1319 RDSNRDFTKE LPNSLKHSCK TRDDFLGQVD VPLYPLPTEN PRMERPYTFK ENSTTRP00000007627/1-1193 RDSNRDFTNE LSNSLQHSCK ---------- ---------- ---------- bmy_13269T0/1-834 ---------- ---------K TRDDFLGQVD VPLYPLPTEN PRMERPYTFK BACU016382/1-1297 RNSNRDFTNE LSNSLQHSCK TRDDFLGQVD VPLYPLPTEN PRMERPYTFK 551 600 ENSP00000345530/1-1247 ---------- ---------- ---------- ---------- --PGWVVLDQ ENSBTAP00000018331/1-1319 DFVLHPRSHK SRVKGYLRLK MTYLPKTSGS EDDNTEQAEE LEPGWVVLDQ ENSTTRP00000007627/1-1193 ---------- ---------- ---------- ---------- --PGWVVLDQ bmy_13269T0/1-834 DFVLHPR--- ---------- -------SGS EEDNTEQAEE LEPGWVVLDQ BACU016382/1-1297 DFVLHPRSQK SRVKGYLRLK MTYLPKTSGS EEDNTEQAEE LEPGWVVLDQ 601 650 ENSP00000345530/1-1247 PDAACHLQQQ QEPSPLPPGW EERQDILGRT YYVNHESRRT QWKRPTPQDN ENSBTAP00000018331/1-1319 PDAACHLQQQ QEPSPLPPGW EERQDILGRT YYVNHESRRT QWKRPTLQDN ENSTTRP00000007627/1-1193 ADAACHLQQQ QEPSPLPPGW EERQDILGRT YYVNHESRRT QWKRPTLQDN bmy_13269T0/1-834 PDAACHLQQQ QEPSPLPPGW EERQDILGRT YYVNHESRRT QWKRPTLQDN BACU016382/1-1297 PDAACHLQQQ QEPSPLPPGW EERQDILGRT YYVNHESRRT QWKRPTLQDN 651 700 ENSP00000345530/1-1247 LTDAENGNIQ LQAQRAFTTR RQISEETESV DNRESSENWE IIREDEATMY ENSBTAP00000018331/1-1319 LTDAENGNIQ LQAQRAFTTR RQISEETESV DNRESSEV-E II-------F ENSTTRP00000007627/1-1193 LTDAENGNIQ LQAQRAFTTR RQISEETESV YSRESSENWE VIREDEATMY bmy_13269T0/1-834 LTDAENGNIQ LQAQRAFTTR RQISEETESV DSRESSENWE VIREDEATMY BACU016382/1-1297 LTDAENGNIQ LQAQRAFTTR RQISEETESV DSRESSENWE VIREDEATTY 701 750 ENSP00000345530/1-1247 SNQAF-PSPP PSSNLDVPTH LAEELNARLT IFGNSAVSQP ASSSNHSSRR ENSBTAP00000018331/1-1319 SFLLVDPSSP PSNNLDVQTH LAEELNARLT VGGNSATGQP VSNSNHSSRR ENSTTRP00000007627/1-1193 SHQAF-PSSP PSNN-DVQTN LA-ELNAXXX XXXXXXXXXX XXXXNHSSRR bmy_13269T0/1-834 SHQAF-PSSP PSNNLDVQTH LAEELNARLT VYGNSATGQP VSSSNHSSRR BACU016382/1-1297 SHQAF-PSSP PSNNLDVQTH LAEELNARLT VYGNSATGQP VSSS------ 751 800 ENSP00000345530/1-1247 GSLQAYTFEE QPTLPVLLPT SSGLPPGWEE KQDERGRSYY VDHNSRTTTW ENSBTAP00000018331/1-1319 GSLQAYTFEE QPTLPVLLPT SSGLPPGWEE KQDERGRSYY VDHNCRTTTW ENSTTRP00000007627/1-1193 GSLQAYTFEE QPTLPVLLPT SSGLPPGWEE KQDERG---- -DH------- bmy_13269T0/1-834 GSLQAYTFEE QPTLPVLLPT SSGLPPGWEE KQDERGRSYY VDHNCRTTTW BACU016382/1-1297 ---------- ------LLPT SSGLPPGWEE KQDERGRSYY VDHNCRTTTW 801 850 ENSP00000345530/1-1247 TKPTVQATVE TSQLTSSQ-S SAGPQSQAST SDSGQQVTQP SEIEQGFLPK ENSBTAP00000018331/1-1319 IKPTVQATVE TSQLPSSQGS SAGPQPQASA SDAAQQVTQP SEMEQGFLPK ENSTTRP00000007627/1-1193 ------ATVE TSQLPSSQGS SAGPHPQAPT SDAAQQVTQP SEVEQGFLPK bmy_13269T0/1-834 IKPTAQATVE TSQLPSSQGS SAGPHPQAPT SDAAQQVTQP SEVEQGFLPK BACU016382/1-1297 IKPTVQATVE TSQLPSSQGS SAGPHPQAPT SDTAQQVTQP SEVEQGFLPK 851 900 ENSP00000345530/1-1247 GWEVRHAPNG RPFFIDHNTK TTTW----ED PRLKIPAHLR GKTSLDTSND ENSBTAP00000018331/1-1319 GWEVRHAPNG RPFFIDHNTK TTTWWAKKED PRLKIPAHLR GKTSLDSSSD ENSTTRP00000007627/1-1193 GWEVRHAPNG RPFFIDHNTK TTTW----ED PRLKIPAHVR GKTSLDSSND bmy_13269T0/1-834 GWEVRHAPNG RPFFIDHNTK TTTW----ED PRLKIPAHVR GKTSLDSSND BACU016382/1-1297 GWEVRHAPNG RPFFIDHNTK TTTW----ED PRLKIPAHVR GKTSLDSSND 901 950 ENSP00000345530/1-1247 LGPLPPGWEE RTHTDGRIFY INHNIKRTQW EDPRLENVAI TGPAVPYSRD ENSBTAP00000018331/1-1319 LGPLPPGWEE RTHTDGRIFY INHNSKKTQW EDPRLQHVAI TGPAVPYSRD ENSTTRP00000007627/1-1193 LGPLPPGWEE RTHTDGRIFY INHNIKRTQW EDPRLQNVAI TGPAVPYSRD bmy_13269T0/1-834 LGPLPPGWEE RTHTDGRIFY INHNIKRTQW EDPRLQNVAI TGPAVPYSRD BACU016382/1-1297 LGPLPPGWEE RTHTDGRIFY INHNIKRTQW EDPRLQNAAI TGPAVPYSRD 951 1000 ENSP00000345530/1-1247 YKRKYEFFRR KLKKQNDIPN KFEMKLRRAT VLEDSYRRIM GVKRADFLKA ENSBTAP00000018331/1-1319 YKRKYEFFRR KLKKQNDIPN KFEMKLRRAT VLEDSYRRIM GVKRADFLKA ENSTTRP00000007627/1-1193 YKRKYEFFRR KLKKQNDIPN KFEMKLRRAT VLEDSYRRIM GVKRADFLKA bmy_13269T0/1-834 YKRKYEFFRR KLKKQNDIPN KFEMKLRRAT VLEDSYRRIM GVKRADFLKA BACU016382/1-1297 YKRKYEFFRR KLKKQNDIPN KFEMKLRRAT VLEDSYRRIM GVKRADFLKA 1001 1050 ENSP00000345530/1-1247 RLWIEFDGEK GLDYGGVARE WFFLISKEMF NPYYGLFEYS ATDNYTLQIN ENSBTAP00000018331/1-1319 RLWIEFDGEK GLDYGGVARE WFFLISKEMF NPYYGLFEYS ATDNYTLQIN ENSTTRP00000007627/1-1193 RLWIEFDGEK GLDYGGVARE WFFLISKEMF NPYYGLFEYS ATDNYTLQIN bmy_13269T0/1-834 RLWIEFDGEK GLDYGGVARE WFFLISKEMF NPYYGLFEYS ATDNYTLQIN BACU016382/1-1297 RLWIEFDGEK GLDYGGVARE WFFLISKEMF NPYYGLFEYS ATDNYTLQIN 1051 1100 ENSP00000345530/1-1247 PNSGLCNEDH LSYFKFIGRV AGMAVYHGKL LD-GFFIRPF YKMMLHKPIT ENSBTAP00000018331/1-1319 PNSGLCNEDH LSYFKFIGRV AGMAVYHGKL LDGGFFIRPF YKMMLHKPIT ENSTTRP00000007627/1-1193 PNSGLCNEDH LSYFKFIGRV AGMAVYHGKL LD-GFFIRPF YKMMLHKPIT bmy_13269T0/1-834 PNSGLCNEDH LSYFKFIGRV AGMAVYHGKL LD-GFFIRPF YKMMLHKPIT BACU016382/1-1297 PNSGLCNEDH LSYFKFIGRV AGMAVYHGKL LD-GFFIRPF YKMMLHKPIT 1101 1150 ENSP00000345530/1-1247 LHDMESVDSE YYNSLRWILE NDPTELDLRF IIDEELFGQT HQHELKNGGS ENSBTAP00000018331/1-1319 LHDMESVDSE YYNSLRWILE NDPTELDLRF VIDEELFGQT HQHELKSGGS ENSTTRP00000007627/1-1193 LHDMESVXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXT HQHELKIGGS bmy_13269T0/1-834 LHDMESVDSE YYNSLRWILE NDPTELDLRF VIDEELFGQT HQHELKNGGS BACU016382/1-1297 LHDMESVDSE YYNSLRWILE NDPTELDLRF VIDEELFGQT HQHELKNGGS 1151 1200 ENSP00000345530/1-1247 EIVVTNKNKK EYIYLVIQWR FVNRIQKQMA AFKEGFFELI PQDLIKIFDE ENSBTAP00000018331/1-1319 EIVVTNKNKK EYIYLVIQWR FVNRIQKQMA AFKEGFFELI PQDLIKIFDE ENSTTRP00000007627/1-1193 EIVVTNKNKK EYIYLVIQWR FVNRIQKQMA AFKEGFFELI PQDLIKIFDE bmy_13269T0/1-834 EIVVTNKNKK EYIYLVIQWR FVNRIQKQMA AFKEGFFELI PQDLIKIFDE BACU016382/1-1297 EIVVTNKNKK EYIYLVIQWR FVNRIQKQMA AFKEGFFELI PQDLIKIFDE 1201 1250 ENSP00000345530/1-1247 NELELLMCGL GDVDVNDWRE HTKYKNGYSA NHQVIQWFWK AVLMMDSEKR ENSBTAP00000018331/1-1319 NELELLMCGL GDVDVNDWRE HTKYKNGYSI NHQVIQWFWK AVLMMDSEKR ENSTTRP00000007627/1-1193 NELELLMCGL GDVDVNDWRE HTKYKNGYSV NHQVIQWFWK AVLMMDSEKR bmy_13269T0/1-834 NELELLMCGL GDVDVSDWRE HTKYKNGYSV NHQVIQWFWK AVLMMDSEKR BACU016382/1-1297 NELELLMCGL GDVDVNDWRE HTKYKNGYSV NHQVIQWFWK AVVMMDSEKR 1251 1300 ENSP00000345530/1-1247 IRLLQFVTGT SRVPMNGFAE LYGSNGPQSF TVEQWGTPEK LPRAHTCFNR ENSBTAP00000018331/1-1319 IRLLQFVTGT SRVPMNGFAE LYGSNGPQSF TVEQWGTPEK LPRAHTCFNR ENSTTRP00000007627/1-1193 IRLLQFVTGT SRVPMNGFAE LYGSNGPQSF TVEQWGTPEK LPRAHT---- bmy_13269T0/1-834 IRLLQFVTGT SRVPMNGFAE LYGSNGPQSF TVEQWGTPEK LPRAHT-FNR BACU016382/1-1297 IRLLQFVTGT SRVPMNGFAE LYGSNGPQSF TVEQWGTPEK LPRAHTCFNR 1301 1350 ENSP00000345530/1-1247 LDLPPYESFE ELWDKLQMAI ENTQGFDGVD ENSBTAP00000018331/1-1319 LDLPPYESFE ELWDKLQMAI ENTQGFDGVD ENSTTRP00000007627/1-1193 ---------- ---------- ---------- bmy_13269T0/1-834 LDLPPYESFE ELWDKLQMAV ENTQGFDGVD BACU016382/1-1297 LDLPPYESFE ELWDKLQMAI ENTQGFDGVD