KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:04:15 2014 Check: 00 .. Name: ENSTTRP00000009527/1-980 Len: 1527 Check: 9649 Weight: 1.00 Name: BACU012726/1-1498 Len: 1527 Check: 327 Weight: 1.00 Name: bmy_13383T0/1-564 Len: 1527 Check: 4930 Weight: 1.00 Name: ENSP00000295718/1-979 Len: 1527 Check: 3926 Weight: 1.00 Name: ENSBTAP00000018336/1-979 Len: 1527 Check: 1304 Weight: 1.00 // 1 50 ENSTTRP00000009527/1-980 ---------- ---------- ---------- ---------- ---------- BACU012726/1-1498 MQAGFHELKE TESWDIKPES KYFLTRNSST IIAFAVGGQY VPGNGFSLIG bmy_13383T0/1-564 ---------- ---------- ---------- ---------- ---------- ENSP00000295718/1-979 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000018336/1-979 ---------- ---------- ---------- ---------- ---------- 51 100 ENSTTRP00000009527/1-980 ---------- MRRPRRP--- ---------- GGXXXX---- ----XXXXXX BACU012726/1-1498 AHTDSPCLRV KRRSRRSQVG FQQVGVETYG GGIWSTWFDR DLTLAGRVIV bmy_13383T0/1-564 ---------- MRRPRRP--- ---------- GGPGGS---- ----GGLRVL ENSP00000295718/1-979 ---------- MRRPRRP--- ---------- GGLGGS---- ----GGLRLL ENSBTAP00000018336/1-979 ---------- MRLPGRP--- ---------- GGPGGS---- ----GGLRVL 101 150 ENSTTRP00000009527/1-980 XX-------- -XXXXX---- ---------- ---------- ---------- BACU012726/1-1498 KCPTSGRLEQ RLVHVGQPIL RIPHLAIHLQ RNVNENFGPN MEMHLVPILA bmy_13383T0/1-564 LC-------- -LMLLG---- ---------- ---------- ---------- ENSP00000295718/1-979 LC-------- -LLLLS---- ---------- ---------- ---------- ENSBTAP00000018336/1-979 LC-------- -LLLLG---- ---------- ---------- ---------- 151 200 ENSTTRP00000009527/1-980 ---------- -XXXXXXXXX XXXXCLF--- DRR------- LCSHL----- BACU012726/1-1498 TAVQEELEKG TPEPGPLSAV VRASCSWEGD DRHHSVLMSL LCAHLGLSSE bmy_13383T0/1-564 ---------- -SRPGGCNAI SAHGCLF--- DRR------- LCSHL----- ENSP00000295718/1-979 ---------- -SRPGGCSAV SAHGCLF--- DRR------- LCSHL----- ENSBTAP00000018336/1-979 ---------- -SRPGGCNAI SAHGCLF--- DRR------- LCSHL----- 201 250 ENSTTRP00000009527/1-980 -----EVCIQ D--------- ---------- ---------- ---------- BACU012726/1-1498 DILEMELCLA DTQPAVLGGA YEEFIFAPRL DNLHSCFCAL QALIDSCASP bmy_13383T0/1-564 -----EVCIQ D--------- ---------- ---------- ---------- ENSP00000295718/1-979 -----EVCIQ D--------- ---------- ---------- ---------- ENSBTAP00000018336/1-979 -----EVCIQ D--------- ---------- ---------- ---------- 251 300 ENSTTRP00000009527/1-980 ---------- ---------- ---------- ---------- ---------- BACU012726/1-1498 ASLAADPHVR MIALYDNEEW GPGPVWVVGP SAWPPAPAPE PGPLEPGLRY bmy_13383T0/1-564 ---------- ---------- ---------- ---------- ---------- ENSP00000295718/1-979 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000018336/1-979 ---------- ---------- ---------- ---------- ---------- 301 350 ENSTTRP00000009527/1-980 ---------- ---------- ---------- ---------- ---------- BACU012726/1-1498 RQVGSESAQG AQSLLTELVL RRISASPQHL TAFEEAIPKS YMISADMAHA bmy_13383T0/1-564 ---------- ---------- ---------- ---------- ---------- ENSP00000295718/1-979 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000018336/1-979 ---------- ---------- ---------- ---------- ---------- 351 400 ENSTTRP00000009527/1-980 ---------- ---------- ---------- ---------- ---------- BACU012726/1-1498 VHPNYLDKHE ENHRPLFHKG PVIKVNSKQR YASNAVSEAL IREVASNVGV bmy_13383T0/1-564 ---------- ---------- ---------- ---------- ---------- ENSP00000295718/1-979 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000018336/1-979 ---------- ---------- ---------- ---------- ---------- 401 450 ENSTTRP00000009527/1-980 ---------- ---------- ---------- ---------- ---------- BACU012726/1-1498 PLQDLMVRND SPCGTTIGPI LASRLGLRVL DLGSPQLAMH SIRETACTTG bmy_13383T0/1-564 ---------- ---------- ---------- ---------- ---------- ENSP00000295718/1-979 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000018336/1-979 ---------- ---------- ---------- ---------- ---------- 451 500 ENSTTRP00000009527/1-980 ---------- ---------- ---------G LF-------- ---------- BACU012726/1-1498 VLQTLTLFKG SQRTKPGRMQ RPLWPGGFRG LWLLLCFLLL KSRPGSGSDV bmy_13383T0/1-564 ---------- ---------- ---------G LF-------- ---------- ENSP00000295718/1-979 ---------- ---------- ---------G LF-------- ---------- ENSBTAP00000018336/1-979 ---------- ---------- ---------G LF-------- ---------- 501 550 ENSTTRP00000009527/1-980 ----GQCQVG VGQARPLLQV TSPVLQRLQG VLRQLMSQGL SWHDDLTQYV BACU012726/1-1498 SDHDGQGQVG VGHLWTLQGF TSPVFQQLQV VLQQIMPQGL FWKDDMTQDV bmy_13383T0/1-564 ----GQCQVG VGQARPLLQV TSPVLQRLQG VLRQLMSQGL SWHDDLTQYV ENSP00000295718/1-979 ----GQCQVG VGQARPLLQV TSPVLQRLQG VLRQLMSQGL SWHDDLTQYV ENSBTAP00000018336/1-979 ----GQCQVG VGQARPLLQV TSPVLQRLQG VLRQLMSQGL SWHDDLTQYV 551 600 ENSTTRP00000009527/1-980 ISQEMERIPR LHPAEPHPRD XXXXXXXXXX XXXXXXXX-- -XXXXXXXXX BACU012726/1-1498 MTQKMGHIGK LHSQDPCVRI GQAAFPSKTT GVRGKQGEKL RLLFPKTPMV bmy_13383T0/1-564 ISQEMERIPR LHPAEPHPRD RSGLAPRRP- ---GPAGE-- -LLLQGIPTG ENSP00000295718/1-979 ISQEMERIPR LRPPEPRPRD RSGLAPKRP- ---GPAGE-- -LLLQDIPTG ENSBTAP00000018336/1-979 ISQEMERIPR LRPPEPHPRD RSGLVPRRP- ---GPAGE-- -LLLQGIPTG 601 650 ENSTTRP00000009527/1-980 X--------- ---XXXXXXX XXXXXXXXXX X--------- ---------- BACU012726/1-1498 KVNRDQCFTS KVVSKALKRE VTNPVKTENG EKKTSIFKRK AVCLTADSAL bmy_13383T0/1-564 S--------- ---APAPQHR LPRPPVGRGG A--------- ---------- ENSP00000295718/1-979 S--------- ---APAAQHR LPQPPVGKGG A--------- ---------- ENSBTAP00000018336/1-979 S--------- ---APALQHR LPRPSVGGGR A--------- ---------- 651 700 ENSTTRP00000009527/1-980 ---------- --------XX XXXX------ ---------- -----XXXXX BACU012726/1-1498 TSKSVFRMAC LDNARWEWGK PGPFCKSPPQ FFNAYKVSSD SSCPKAELLP bmy_13383T0/1-564 ---------- --------GA GSPL--SPLQ ---------- -----AELLP ENSP00000295718/1-979 ---------- --------GA SSSL--SPLQ ---------- -----AELLP ENSBTAP00000018336/1-979 ---------- --------GA GSPL--SPLQ ---------- -----AELLP 701 750 ENSTTRP00000009527/1-980 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ---------- ---------- BACU012726/1-1498 PLLEHLLLPP QPPHPALSYE PALLQPYLFH ---------- ---------- bmy_13383T0/1-564 PLLEHLLLSP QPPHPALSYE PALLQPYLFH QVSSRPPPHR NPSPPALMSA ENSP00000295718/1-979 PLLEHLLLPP QPPHPSLSYE PALLQPYLFH ---------- ---------- ENSBTAP00000018336/1-979 PLLEHLLLPP QPPHPALSYE PALLQPYLFH ---------- ---------- 751 800 ENSTTRP00000009527/1-980 --------XF GSRDGPRSSE SSPGMVSVGP LPRAEPPALF SRTASKGTFG BACU012726/1-1498 --------QF GSRDGPRSSE SSPGMVSVGP LPKAEPPALF SRTASKGTFG bmy_13383T0/1-564 LIRISGFPQF GSRDGPRSSE SSPGMVSVGP LPKAEPPALF SRTASKGTFG ENSP00000295718/1-979 --------QF GSRDGSRVSE GSPGMVSVGP LPKAEAPALF SRTASKGIFG ENSBTAP00000018336/1-979 --------QF GSRDGSRGSE SSPGMVSVDP LPKAEAPAFL SRAGSKGMFG 801 850 ENSTTRP00000009527/1-980 AHPGRSYGDP PGPPPAQLLQ ESGLLYLAQE PQVPSRARAP RLPEQGGSSQ BACU012726/1-1498 AHPGHSYGDP PGPPPARLFQ ESGLLYLAQE PQVPSRAGAP RLPEQGGSSQ bmy_13383T0/1-564 AHPGHSYGDP PGPPPARLFQ ESGLLYLAQE PQVPSRAGAP RLPEQGGSSQ ENSP00000295718/1-979 DHPGHSYGDL PGPSPAQLFQ DSGLLYLAQE LPAPSRARVP RLPEQGSSSR ENSBTAP00000018336/1-979 AHPGHSYGDP PGPPPAQLFQ ESELFYLAQE SQVPSRTRAP RLPEPGGSSR 851 900 ENSTTRP00000009527/1-980 ADDSSEGYEE EGLEGRREKP PSPEEQP-DV TLQRLAAVLA GYGVELRQLT BACU012726/1-1498 GDDSSEGYEE EGLEGRREKP PSPEERPADV TLQRLAAVLA GYGVELRQLT bmy_13383T0/1-564 GDDSSEGYEE EGLEGRREKP PSPEERPADV TLQRLAAVLA GYGVELRQLT ENSP00000295718/1-979 AEDSPEGYEK EGLGDRGEKP ASPAVQP-DA ALQRLAAVLA GYGVELRQLT ENSBTAP00000018336/1-979 AGDSSEGYEE EGLEGREEKP PAPAEQP-DV TLQRVAAVLA GYGVELHQLT 901 950 ENSTTRP00000009527/1-980 PEQLSTLSTL LRLLPKAAGR NLGGVVNIGA DIKKTVEEQV QGADAAEPPP BACU012726/1-1498 PEQLSTLSTL LQLLPKGAGR NLGGVVNIGA DIKKTMQEQV QGADAAEPPP bmy_13383T0/1-564 AEQLSTLSTL LQLLPKGAGR NLGGVVNIGA DIKKTMEEQV QGADAAEPPP ENSP00000295718/1-979 PEQLSTLLTL LQLLPKGAGR NPGGVVNVGA DIKKTMEGPV EGRDTAELPA ENSBTAP00000018336/1-979 PEQLSTLSTL LQLLPKGSRQ NPGGAVNVGA DIKKTMEEQV QGEDPAEPPP 951 1000 ENSTTRP00000009527/1-980 PTPSLPGSPT AGPTSSKAQQ ELSSGSSEPP KAAGPPATPI LREEKSPPGQ BACU012726/1-1498 PTPSLPGYPT AGLTSSKAQQ ELSSGSSEPP KAAGPPATPI LLEKKSPLGQ bmy_13383T0/1-564 PTPSLPGSPT AGPTSNKAQQ ELSSGSSEPP KAAGPPATPI LLEKKSPLGQ ENSP00000295718/1-979 RTSPMPGHPT ASPTSSEVQQ VPSPVSSEPP KAARPPVTPV LLEKKSPLGQ ENSBTAP00000018336/1-979 PMPSLPGSPT GSSTSNKAQK ELSTGASEPP KAAGPPATPV LVEKKSPLGQ 1001 1050 ENSTTRP00000009527/1-980 SQPTAAGQPS ARPSAEEYGY VVTDQKPLSL AAGVKLLEIL AEHVHMSSGS BACU012726/1-1498 SQPTVAGQPS ARPSAEEYGY IVTDQKPLSL AAGVKLLEIL AEHVHMSSGS bmy_13383T0/1-564 SQPTVAGQPS ARPSAEEYGY IVTDQKPLSL AAGVKLLEIL AEHVHMSSGS ENSP00000295718/1-979 SQPTVAGQPS ARPAAEEYGY IVTDQKPLSL AAGVKLLEIL AEHVHMSSGS ENSBTAP00000018336/1-979 NQPTMAGQPS TRPSAEEYGY IVTDQKPLSL AAGVRLLEIL AEHVHMSSGS 1051 1100 ENSTTRP00000009527/1-980 FINISVVGPA LTFRIRHNEQ NLSLADVTKQ AGMVKSELEA QTGLQILQTG BACU012726/1-1498 FINISVVGPA LTFRIQHNEQ NLSLADVTKQ AGMVKSELEA QTGLQILQTG bmy_13383T0/1-564 FINISPATGP IQY------- ---------- ---------- ---------- ENSP00000295718/1-979 FINISVVGPA LTFRIRHNEQ NLSLADVTQQ AGLVKSELEA QTGLQILQTG ENSBTAP00000018336/1-979 FINISVVGPA LTFRIRHNEQ NLSLADVTQQ AGLVKSELEA QTGLQILQTG 1101 1150 ENSTTRP00000009527/1-980 VGQREEAAAV LPRPAHGTSP MRSMLLTLVA LAGVAGLLVA XXXXXXXXXX BACU012726/1-1498 VGQREEAAAV LPRPAHSTSP VRSVLLTLVA LAGVAGLLVA LAVALCARQR bmy_13383T0/1-564 ---------- LPSLKH---- ---------- ---------- ---------- ENSP00000295718/1-979 VGQREEAAAV LPQTAHSTSP MRSVLLTLVA LAGVAGLLVA LAVALCVRQH ENSBTAP00000018336/1-979 VGQREEAAAI LPRPAHSTSP MRSVLLTLVA LAGVAGLLVA LAVALCVRQH 1151 1200 ENSTTRP00000009527/1-980 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX BACU012726/1-1498 ARQRDKERLA ALGPEGAHGD TTFEYQDLCR QHMATKSLFN RAEGPPEPSR bmy_13383T0/1-564 ---------- ---------- ---------- ---------- ---------- ENSP00000295718/1-979 ARQQDKERLA ALGPEGAHGD TTFEYQDLCR QHMATKSLFN RAEGPPEPSR ENSBTAP00000018336/1-979 ARQRDKERLA ALGPEGAHGD TTFEYQDLCR QHMATKSLFN RAEGPPEPSR 1201 1250 ENSTTRP00000009527/1-980 XXXXXXXXXX XXXXXXXXXX XXXXXQCEEP AQANMDISTG HMILAYMEDH BACU012726/1-1498 VSSVSSQFSD AAQASPSSHS STPSW-CEEP AQANMDISTG HMILAYMEDH bmy_13383T0/1-564 ---------- ---------- ---------- ---------- ---------- ENSP00000295718/1-979 VSSVSSQFSD AAQASPSSHS STPSW-CEEP AQANMDISTG HMILAYMEDH ENSBTAP00000018336/1-979 VSSVSSQFSD AAQASPSSHS STPSW-CEEP AQANMDISTG HMILAYMEDH 1251 1300 ENSTTRP00000009527/1-980 LRNRDRLAKE WRALCAYQAE PNTCATAQGE GNIKKNRNPD FLPYDHARIK BACU012726/1-1498 LRNRDRLAKE WQALCAYQAE PNTCATAQGE GNIKKNRNPD FLPYDHARIK bmy_13383T0/1-564 ---------- ---------- ---------- ---------- ---------- ENSP00000295718/1-979 LRNRDRLAKE WQALCAYQAE PNTCATAQGE GNIKKNRHPD FLPYDHARIK ENSBTAP00000018336/1-979 LRNRDRLAKE WQALCAYQAE PNTCATAQGE GNIKKNRHPD FLPYDHARIK 1301 1350 ENSTTRP00000009527/1-980 LKVESSPSRS DYINASPIIE HDPRMPAYIA TQGPLSHTIS DFWQMVWESG BACU012726/1-1498 LKVESSPSRS DYINASPIIE HDPRMPAYIA TQGPLSHTIS DFWQMVWESG bmy_13383T0/1-564 ------PCMA SLIGFSPIL- ---------- ---------- ---------- ENSP00000295718/1-979 LKVESSPSRS DYINASPIIE HDPRMPAYIA TQGPLSHTIA DFWQMVWESG ENSBTAP00000018336/1-979 LKVESSPSRS DYINASPIIE HDPRMPAYIA TQGPLSHTIA DFWQMVWESG 1351 1400 ENSTTRP00000009527/1-980 CTVIVMLTPL VEDGVKQCDR YWPDEGSSLY HVYEVNLVSE HIWCEDFLVR BACU012726/1-1498 CTVIVMLTPL VEDGVKQCDR YWPDEGSSLY HVYEVNLVSE HIWCEDFLVR bmy_13383T0/1-564 ---------- ---------- ---------- ---------- ---------- ENSP00000295718/1-979 CTVIVMLTPL VEDGVKQCDR YWPDEGASLY HVYEVNLVSE HIWCEDFLVR ENSBTAP00000018336/1-979 CTVIVMLTPL VEDGVKQCDR YWPDEGSSLY HVYEVNLVSE HIWCEDFLVR 1401 1450 ENSTTRP00000009527/1-980 SFYLKNVQTQ ETRTLTQFHF LSWPAEGTPA STRPLLDFRR KVNKCYRGRS BACU012726/1-1498 SFYLKNVQTQ ETRTLTQFHF LSWPAEGTPA STRPLLDFRR KVNKCYRGRS bmy_13383T0/1-564 ---------- ---------- ---------- ---------- ---------- ENSP00000295718/1-979 SFYLKNVQTQ ETRTLTQFHF LSWPAEGTPA STRPLLDFRR KVNKCYRGRS ENSBTAP00000018336/1-979 SFYLKNVQTQ ETRTLTQFHF LSWPAEGTPA STRPLLDFRR KVNKCYRGRS 1451 1500 ENSTTRP00000009527/1-980 CPIIVHCSDG AGRTGTYILI DMVLNRMAKG VKEIDIAATL EHVRDQRPGL BACU012726/1-1498 CPIIVHCSDG AGRTGTYILI DMVLNRMAKG VKEIDIAATL EHVRDQRPGL bmy_13383T0/1-564 ---------- ---------- ---------- ---------- ---------- ENSP00000295718/1-979 CPIIVHCSDG AGRTGTYILI DMVLNRMAKG VKEIDIAATL EHVRDQRPGL ENSBTAP00000018336/1-979 CPIIVHCSDG AGRTGTYILI DMVLNRMAKG VKEIDIAATL EHVRDQRPGL 1501 1550 ENSTTRP00000009527/1-980 VRSKDQFEFA LTAVAEEVNA ILKALPQ BACU012726/1-1498 VRSKDQFEFA LTAVAEEVNA ILKALPQ bmy_13383T0/1-564 ---------- ---------- ------- ENSP00000295718/1-979 VRSKDQFEFA LTAVAEEVNA ILKALPQ ENSBTAP00000018336/1-979 VRSKDQFEFA LTAVAEEVNA ILKALPQ